View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4639-Insertion-9 (Length: 515)
Name: NF4639-Insertion-9
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4639-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 495
Target Start/End: Complemental strand, 51730521 - 51730032
Alignment:
| Q |
8 |
ggggacataccaaagattccagtatttccacacaaaaaaggccctgaggtattcaatggcaaggtcctgcattcgcttgattattctaaacttgaccaac |
107 |
Q |
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| T |
51730521 |
ggggacatacctaagattccagtatttccatgcaaaaaaggccctgaggtattcaatggcaatgtcctacatacacttgattactgtaaacttgaccaac |
51730422 |
T |
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| Q |
108 |
atgctgctaaccaacttcccaacaacaaaaaggttgtggtcgttggtttcaaaaaatctgctatcgatttagtcatggagtgtgcacatgcaagccaagg |
207 |
Q |
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| T |
51730421 |
aagctgctaatcaacttctcaacaacaaaaaggttgttgtggttggtttcaaaaaatctgctatcgatttagtcatggagtgtgcacatgcaaaccaagg |
51730322 |
T |
|
| Q |
208 |
taattaattaaaacctactctcaagttacttgattatgaatttttatgtaattaaaaaatcaaaactaatatgcacaatatagaatgtcgttgtatattg |
307 |
Q |
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| T |
51730321 |
taattaattaaaacctactctcaagttacttgattatgaatttttatgtaattaaaaaatcaaaactaa-atgcacaatatagaatgtcgttgtatattg |
51730223 |
T |
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| Q |
308 |
cttctcatgacaact-aagagtctagcctccatagaaatatccttatatttcaattcaataatcactcacaaactctctttgagcaccaattttctttac |
406 |
Q |
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| T |
51730222 |
cttctcatgacaactaaagagtctagcctccatagaaatatccttata-ttcaattcaataatcactcacaaactctctatgtgcaccaattttctttac |
51730124 |
T |
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| Q |
407 |
atgattcaaaatgcggacatatg---ttctgcacataaacacagcaagtgaataatgtattgatcaagcataaaattgggtgtgaactttag |
495 |
Q |
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| T |
51730123 |
atgattcaaaatgcggacatatgttcttctgcacataaacacagcaagtgaataatgtattgatcaagcataaaattgggtgtgaactttag |
51730032 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 19190989 - 19190916
Alignment:
| Q |
137 |
aaggttgtggtcgttggtttcaaaaaatctgctatcgatttagtcatggagtgtgcacatgcaagccaaggtaa |
210 |
Q |
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|||||||| || || |||| ||||||||| ||||| ||| ||| ||||||||||||||| |||| ||||||||| |
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| T |
19190989 |
aaggttgtcgttgtgggttacaaaaaatcagctattgatctagccatggagtgtgcacaggcaaaccaaggtaa |
19190916 |
T |
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