View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4639_high_2 (Length: 345)

Name: NF4639_high_2
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4639_high_2
NF4639_high_2
[»] chr6 (11 HSPs)
chr6 (12-114)||(6101551-6101653)
chr6 (28-95)||(21772614-21772681)
chr6 (11-103)||(8652825-8652917)
chr6 (50-112)||(17579760-17579822)
chr6 (11-112)||(32031479-32031580)
chr6 (224-267)||(25343802-25343845)
chr6 (11-89)||(21192916-21192994)
chr6 (223-267)||(8662723-8662767)
chr6 (223-267)||(21196963-21197007)
chr6 (125-161)||(8651405-8651441)
chr6 (125-161)||(32030068-32030104)
[»] scaffold0208 (4 HSPs)
scaffold0208 (9-114)||(29178-29283)
scaffold0208 (9-114)||(10444-10549)
scaffold0208 (229-267)||(6696-6734)
scaffold0208 (125-161)||(11906-11942)
[»] chr5 (15 HSPs)
chr5 (10-114)||(19061725-19061829)
chr5 (10-114)||(28527387-28527491)
chr5 (9-114)||(12688183-12688288)
chr5 (9-114)||(32096217-32096322)
chr5 (18-88)||(41293163-41293233)
chr5 (223-267)||(28531424-28531468)
chr5 (224-261)||(32096903-32096940)
chr5 (220-262)||(19066046-19066088)
chr5 (223-267)||(12692223-12692267)
chr5 (190-226)||(12686187-12686223)
chr5 (125-161)||(12686791-12686827)
chr5 (190-226)||(12692289-12692325)
chr5 (190-226)||(24054450-24054486)
chr5 (125-161)||(28525987-28526023)
chr5 (125-161)||(32094824-32094860)
[»] chr3 (14 HSPs)
chr3 (12-114)||(11841748-11841850)
chr3 (10-114)||(49155733-49155837)
chr3 (9-114)||(10762661-10762766)
chr3 (9-114)||(42193236-42193341)
chr3 (11-103)||(10240230-10240322)
chr3 (11-103)||(38451084-38451176)
chr3 (223-267)||(49151785-49151829)
chr3 (223-267)||(42197104-42197148)
chr3 (229-267)||(10244282-10244320)
chr3 (223-261)||(38455494-38455532)
chr3 (234-267)||(11846016-11846049)
chr3 (125-161)||(10238815-10238851)
chr3 (125-161)||(38449665-38449701)
chr3 (125-161)||(49157201-49157237)
[»] chr7 (9 HSPs)
chr7 (10-114)||(35150003-35150107)
chr7 (11-103)||(3813185-3813277)
chr7 (223-267)||(30219216-30219260)
chr7 (221-262)||(43540154-43540195)
chr7 (11-103)||(349879-349971)
chr7 (125-161)||(3811772-3811808)
chr7 (190-226)||(28420967-28421003)
chr7 (261-293)||(35148000-35148032)
chr7 (190-226)||(35148012-35148048)
[»] chr1 (6 HSPs)
chr1 (18-114)||(38145877-38145973)
chr1 (9-114)||(25383551-25383656)
chr1 (11-103)||(31056100-31056192)
chr1 (220-267)||(31051722-31051769)
chr1 (10-112)||(15375890-15375992)
chr1 (229-267)||(25387452-25387490)
[»] chr8 (11 HSPs)
chr8 (18-114)||(5544189-5544285)
chr8 (9-85)||(10704159-10704236)
chr8 (11-112)||(39729250-39729351)
chr8 (11-112)||(14414020-14414121)
chr8 (223-267)||(32891062-32891106)
chr8 (224-267)||(31373510-31373553)
chr8 (56-99)||(30413332-30413375)
chr8 (11-90)||(32895069-32895148)
chr8 (125-161)||(10705360-10705396)
chr8 (125-161)||(32896533-32896569)
chr8 (125-161)||(39727888-39727924)
[»] chr2 (9 HSPs)
chr2 (9-114)||(13460079-13460184)
chr2 (10-112)||(23341636-23341738)
chr2 (223-267)||(13456273-13456317)
chr2 (227-267)||(31002551-31002591)
chr2 (11-103)||(35086689-35086781)
chr2 (223-267)||(35090592-35090636)
chr2 (125-161)||(35439972-35440008)
chr2 (227-259)||(29833389-29833421)
chr2 (125-161)||(35085282-35085318)
[»] chr4 (10 HSPs)
chr4 (11-103)||(26959150-26959242)
chr4 (10-114)||(48165231-48165334)
chr4 (28-114)||(5186891-5186977)
chr4 (10-103)||(10735368-10735461)
chr4 (10-103)||(10949137-10949230)
chr4 (223-267)||(49976760-49976804)
chr4 (229-267)||(24288158-24288196)
chr4 (125-161)||(26957405-26957441)
chr4 (223-259)||(26963283-26963319)
chr4 (125-161)||(48166700-48166736)
[»] scaffold0363 (1 HSPs)
scaffold0363 (11-112)||(4590-4691)
[»] scaffold0012 (1 HSPs)
scaffold0012 (223-259)||(172832-172868)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 6101551 - 6101653
Alignment:
Q  12 tatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaa 111  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  6101551 tataattttggagttgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcagctgaataaaacttttgtgtcaa 6101650  T
Q  112 ttg 114  Q
    |||    
T  6101651 ttg 6101653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 21772681 - 21772614
Alignment:
Q  28 cataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaat 95  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||    
T  21772681 cataagatggatttcaatatagtgtttcttaatgatgacgttaatgatgcaatatggtgcaactgaat 21772614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 8652917 - 8652825
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 103  Q
    ||||| ||||| || | |||||||||||| |||||  | |||||||||||| ||||||||||||| |||||||||||||| |||| |||||||    
T  8652917 ttatagttttgaagctacataagatggatgtcaatgcattgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 8652825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 17579760 - 17579822
Alignment:
Q  50 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaat 112  Q
    ||||||| |||||||||||||||||||||||||||||||||  || |||||||| ||||||||    
T  17579760 tgtttctcaatggtgacattaatgatacaatatggtgcaacttaagaaaacttttgtgtcaat 17579822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 32031580 - 32031479
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtca 110  Q
    ||||| ||||| || | |||||||||||| |||||  | ||||||| |||||||||||||||||||||||||||||| ||  || |||||| | ||||||    
T  32031580 ttatagttttgaagctacataagatggatgtcaatgcattgtttctcaatggtgacattaatgatacaatatggtgctacttaagaaaactcttgtgtca 32031481  T
Q  111 at 112  Q
    ||    
T  32031480 at 32031479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 267
Target Start/End: Complemental strand, 25343845 - 25343802
Alignment:
Q  224 atcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  25343845 atcccaataaatcaaacatgaagaccgctctgataccacttgtt 25343802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 21192994 - 21192916
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaa 89  Q
    ||||| |||||||  |||||||||||||| |||||| | ||| |||| |||| |||||||| |||||||||||||||||    
T  21192994 ttataattttggacttgcataagatggatgtcaatacaatgtatcttgatggcgacattaacgatacaatatggtgcaa 21192916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 8662723 - 8662767
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
T  8662723 aatcccaataaatcaaacataaagaccgctctgataccacttgtt 8662767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 21196963 - 21197007
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    ||||| |||||||||||||| ||||||||||||||||||| ||||    
T  21196963 aatcctaataaatcaaacataaagaccgctctgataccacttgtt 21197007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 8651441 - 8651405
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  8651441 gcgcctaaagaattctgatataattattaagatatgt 8651405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 32030104 - 32030068
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  32030104 gcgcctaaagaattctgatataattattaagatatgt 32030068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 29178 - 29283
Alignment:
Q  9 gattatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgt 108  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||    
T  29178 gattataattttggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgt 29277  T
Q  109 caattg 114  Q
    ||||||    
T  29278 caattg 29283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 10444 - 10549
Alignment:
Q  9 gattatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgt 108  Q
    ||||||| |||||||| |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||    
T  10444 gattataattttggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgt 10543  T
Q  109 caattg 114  Q
    ||||||    
T  10544 caattg 10549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 6734 - 6696
Alignment:
Q  229 aataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  6734 aataaatcaaacatgaagacggctctgataccacttgtt 6696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 11906 - 11942
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  11906 gcgcctaaagaattctgatataattattaagatatgt 11942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 19061829 - 19061725
Alignment:
Q  10 attatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtc 109  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||    
T  19061829 attataattttggagctgcataagatgaatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaactgaataaagctttcgtttc 19061730  T
Q  110 aattg 114  Q
    |||||    
T  19061729 aattg 19061725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 28527491 - 28527387
Alignment:
Q  10 attatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtc 109  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| |||||    
T  28527491 attataattttggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatttgaataaaacttttgtgtc 28527392  T
Q  110 aattg 114  Q
    |||||    
T  28527391 aattg 28527387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 12688288 - 12688183
Alignment:
Q  9 gattatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgt 108  Q
    ||||||| |||||||| |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||    
T  12688288 gattataattttggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgt 12688189  T
Q  109 caattg 114  Q
    ||||||    
T  12688188 caattg 12688183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 32096322 - 32096217
Alignment:
Q  9 gattatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgt 108  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||||| ||||    
T  32096322 gattataattttggagctgcataagatggattttaatatagtgtttcttaatggtgacattaacgatacaagatggtgcatctgaataaaacttttgtgt 32096223  T
Q  109 caattg 114  Q
    ||||||    
T  32096222 caattg 32096217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 41293163 - 41293233
Alignment:
Q  18 tttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgca 88  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41293163 tttggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgca 41293233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 28531424 - 28531468
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  28531424 aatcccaataaatcaaacatgaagaccgctctgataccacttgtt 28531468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 32096903 - 32096940
Alignment:
Q  224 atcccaataaatcaaacatgaagaccgctctgatacca 261  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32096903 atcccaataaatcaaacatgaagaccgctctgatacca 32096940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 19066046 - 19066088
Alignment:
Q  220 aaaaatcccaataaatcaaacatgaagaccgctctgataccac 262  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  19066046 aaaaatcccaataaatcaaacgcgaagaccgctctgataccac 19066088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 12692223 - 12692267
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||||    
T  12692223 aatcctaataaatcaaacatgaagacggctctgataccacttgtt 12692267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 12686187 - 12686223
Alignment:
Q  190 aacatatttcataaaacatgttcaacaattaaaaatc 226  Q
    |||| |||||||||||||||||||||||||| |||||    
T  12686187 aacagatttcataaaacatgttcaacaattataaatc 12686223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 12686827 - 12686791
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  12686827 gcgcctaaagaattctgatataattattaagatatgt 12686791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 12692289 - 12692325
Alignment:
Q  190 aacatatttcataaaacatgttcaacaattaaaaatc 226  Q
    |||| |||||||||||||||||||||||||| |||||    
T  12692289 aacagatttcataaaacatgttcaacaattataaatc 12692325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 24054486 - 24054450
Alignment:
Q  190 aacatatttcataaaacatgttcaacaattaaaaatc 226  Q
    |||| |||||||||||||||||||||||||| |||||    
T  24054486 aacagatttcataaaacatgttcaacaattataaatc 24054450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 28526023 - 28525987
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  28526023 gcgcctaaagaattctgatataattattaagatatgt 28525987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 32094860 - 32094824
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  32094860 gcgcctaaagaattctgatataattattaagatatgt 32094824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 11841850 - 11841748
Alignment:
Q  12 tatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaa 111  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| |||||||    
T  11841850 tataattttggagctgcataagatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaataaaacttttgtgtcaa 11841751  T
Q  112 ttg 114  Q
    |||    
T  11841750 ttg 11841748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 49155733 - 49155837
Alignment:
Q  10 attatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtc 109  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| |||||    
T  49155733 attataattttggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatttgaataaaacttttgtgtc 49155832  T
Q  110 aattg 114  Q
    |||||    
T  49155833 aattg 49155837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 10762766 - 10762661
Alignment:
Q  9 gattatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgt 108  Q
    ||||||| |||||||| |||||||||||||||  ||||||||||||||||||||||||||||| || ||||||||||||| | |||||||||||| ||||    
T  10762766 gattataattttggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgacacaatatggtgcatctgaataaaacttttgtgt 10762667  T
Q  109 caattg 114  Q
    ||||||    
T  10762666 caattg 10762661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 42193341 - 42193236
Alignment:
Q  9 gattatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgt 108  Q
    ||||||| |||||||| |||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||    
T  42193341 gattataattttggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgatacaatatggtgcatgtgaataaaacttttgtgt 42193242  T
Q  109 caattg 114  Q
    ||||||    
T  42193241 caattg 42193236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 10240322 - 10240230
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 103  Q
    ||||| ||||| || | |||||||||||| |||||  | |||||||||||| ||||||||||||| |||||||||||||| |||| |||||||    
T  10240322 ttatagttttgaagctacataagatggatgtcaatgcattgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 10240230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 38451176 - 38451084
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 103  Q
    ||||| ||||| || | |||||||||||| |||||  | |||||||||||| |||||| |||||| |||||||||||||| |||| |||||||    
T  38451176 ttatagttttgaagctacataagatggatgtcaatgcattgtttcttaatgatgacatcaatgatgcaatatggtgcaactgaatcaaacttt 38451084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 49151829 - 49151785
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  49151829 aatcccaataaatcaaacatgaagaccgctctgataccacttgtt 49151785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 42197104 - 42197148
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
T  42197104 aatcctaataaatcaaacatgaagaccgctctgataccacttgtt 42197148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 10244282 - 10244320
Alignment:
Q  229 aataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  10244282 aataaatcaaacatgaagaccgctctgataccacttgtt 10244320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 38455494 - 38455532
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgatacca 261  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  38455494 aatcctaataaatcaaacatgaagaccgctctgatacca 38455532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 11846016 - 11846049
Alignment:
Q  234 atcaaacatgaagaccgctctgataccacatgtt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  11846016 atcaaacatgaagaccgctctgataccacttgtt 11846049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 10238851 - 10238815
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  10238851 gcgcctaaagaattctgatataattattaagatatgt 10238815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 38449701 - 38449665
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  38449701 gcgcctaaagaattctgatataattattaagatatgt 38449665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 49157201 - 49157237
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  49157201 gcgcctaaagaattctgatataattattaagatatgt 49157237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 35150107 - 35150003
Alignment:
Q  10 attatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtc 109  Q
    |||||| ||||| || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||    
T  35150107 attataattttgaagctgcataagatgaatttcaatatagtgtttcttaatgatgacattaatgatacaatatggtgcaactgaataaaacttttgtgtc 35150008  T
Q  110 aattg 114  Q
    |||||    
T  35150007 aattg 35150003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 3813277 - 3813185
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 103  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||    
T  3813277 ttataattttggaactgcataagatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 3813185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 30219216 - 30219260
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  30219216 aatcccaataaatcaaacatgaataccgctctgataccacgtgtt 30219260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 43540195 - 43540154
Alignment:
Q  221 aaaatcccaataaatcaaacatgaagaccgctctgataccac 262  Q
    |||||| ||||| || ||||||||||||||||||||||||||    
T  43540195 aaaatctcaatagatgaaacatgaagaccgctctgataccac 43540154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 349879 - 349971
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 103  Q
    ||||| ||||| || | |||||||| ||| |||||  | ||||||| |||||||||||||||||||| ||| || |||||   ||||||||||    
T  349879 ttatagttttgaagctacataagatagatgtcaatgcattgtttctcaatggtgacattaatgatactatacggcgcaaccacataaaacttt 349971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 3811808 - 3811772
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  3811808 gcgcctaaagaattctgatataattattaagatatgt 3811772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 28420967 - 28421003
Alignment:
Q  190 aacatatttcataaaacatgttcaacaattaaaaatc 226  Q
    |||| |||||||||||||||||||||||||| |||||    
T  28420967 aacagatttcataaaacatgttcaacaattataaatc 28421003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 35148032 - 35148000
Alignment:
Q  261 acatgttttatgaaatctgtttttatcaagaca 293  Q
    |||||||||||||||||||||||||| ||||||    
T  35148032 acatgttttatgaaatctgtttttattaagaca 35148000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 35148012 - 35148048
Alignment:
Q  190 aacatatttcataaaacatgttcaacaattaaaaatc 226  Q
    |||| |||||||||||||||||||||||||| |||||    
T  35148012 aacagatttcataaaacatgttcaacaattataaatc 35148048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 38145973 - 38145877
Alignment:
Q  18 tttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||    
T  38145973 tttggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgtcaattg 38145877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 25383656 - 25383551
Alignment:
Q  9 gattatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgt 108  Q
    ||||||| |||||||| |||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||    
T  25383656 gattataattttggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgatacaatatggtgcatgtgaataaaacttttgtgt 25383557  T
Q  109 caattg 114  Q
    ||||||    
T  25383556 caattg 25383551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 31056100 - 31056192
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 103  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||    
T  31056100 ttataattttggaactgcataagatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 31056192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 31051769 - 31051722
Alignment:
Q  220 aaaaatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  31051769 aaaaatctcaatagatcaaacatgaagaccgctctgataccacttgtt 31051722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 15375992 - 15375890
Alignment:
Q  10 attatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtc 109  Q
    |||||| |||||||| |||||||||||||| |||||| | | | | |||||||  ||||||| ||||||||| |||||||   || |||||||| |||||    
T  15375992 attatatttttggagctgcataagatggatgtcaatacaatatattttaatggcaacattaaggatacaataaggtgcaattaaagaaaacttttgtgtc 15375893  T
Q  110 aat 112  Q
    |||    
T  15375892 aat 15375890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 25387452 - 25387490
Alignment:
Q  229 aataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  25387452 aataaatcaaacatgaagaccgctctgataccacttgtt 25387490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 5544285 - 5544189
Alignment:
Q  18 tttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||||||||    
T  5544285 tttggagctgcataagatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatatgaataaaacttttgtgtcaattg 5544189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 10704159 - 10704236
Alignment:
Q  9 gattatacttttggagatgcataagatggatttcaa-tatagtgtttcttaatggtgacattaatgatacaatatggt 85  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10704159 gattatacttttggagctgcataagatggatttcaaatatagtgtttcttaatggtgacattaatgatacaatatggt 10704236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 39729351 - 39729250
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtca 110  Q
    ||||| ||||| || | |||||||||||| |||||| | | ||||| |||||||||||||||||||||||||||||||||  || |||||||| ||||||    
T  39729351 ttatagttttgaagctacataagatggatgtcaatacattttttctcaatggtgacattaatgatacaatatggtgcaacttaagaaaacttttgtgtca 39729252  T
Q  111 at 112  Q
    ||    
T  39729251 at 39729250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 14414020 - 14414121
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtca 110  Q
    ||||| ||||| || | |||||||||||| |||||  | ||||||| |||||||||||||||||| ||||||||||||||  || |||||| | ||||||    
T  14414020 ttatagttttgaagctacataagatggatgtcaatgcattgtttctcaatggtgacattaatgattcaatatggtgcaacttaagaaaactcttgtgtca 14414119  T
Q  111 at 112  Q
    ||    
T  14414120 at 14414121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 32891106 - 32891062
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  32891106 aatcccaataaatcaaacatgaagaccgctctgataccacttgtt 32891062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 31373510 - 31373553
Alignment:
Q  224 atcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    
T  31373510 atcccaataaatcaaacatgaagaccgttctgataccacttgtt 31373553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 30413332 - 30413375
Alignment:
Q  56 ttaatggtgacattaatgatacaatatggtgcaacagaataaaa 99  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||    
T  30413332 ttaatggcgacattaatgatacaatatgatgcaaccgaataaaa 30413375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 32895069 - 32895148
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaac 90  Q
    ||||| ||||| || | |||||||||||| |||||  | ||||||| |||||||||||||||||||| ||| || |||||    
T  32895069 ttatagttttgaagctacataagatggatgtcaatgcattgtttctcaatggtgacattaatgatactatacggcgcaac 32895148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 10705360 - 10705396
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  10705360 gcgcctaaagaactctggtataattattaagatatgt 10705396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 32896533 - 32896569
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  32896533 gcgcctaaagaattctgatataattattaagatatgt 32896569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 39727924 - 39727888
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  39727924 gcgcctaaagaattctgatataattattaagatatgt 39727888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 13460079 - 13460184
Alignment:
Q  9 gattatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgt 108  Q
    ||||||| |||||||| |||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||    
T  13460079 gattataattttggagctgcataagatggattataatatagtgtttcttaatggtgacattaacgatacaatatggtgcatgtgaataaaacttttgtgt 13460178  T
Q  109 caattg 114  Q
    ||||||    
T  13460179 caattg 13460184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 23341636 - 23341738
Alignment:
Q  10 attatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtc 109  Q
    |||||| |||||||| |||||||||||||| ||||||||||  || |||||||  ||||||||||||||||||||||||||  || |||||||| |||||    
T  23341636 attataattttggagttgcataagatggatgtcaatatagtaatttttaatggcaacattaatgatacaatatggtgcaactaaagaaaacttttgtgtc 23341735  T
Q  110 aat 112  Q
    |||    
T  23341736 aat 23341738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 13456317 - 13456273
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
T  13456317 aatcctaataaatcaaacatgaagaccgctctgataccacttgtt 13456273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 31002591 - 31002551
Alignment:
Q  227 ccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  31002591 ccaataaatcaaacatgaagaccgctctgataccacttgtt 31002551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 35086781 - 35086689
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 103  Q
    ||||| ||||| || | |||||||||||| |||||  | ||||||| |||||||||||||||||||| |||||| |||||   ||||||||||    
T  35086781 ttatagttttgaagctacataagatggatgtcaatgcattgtttctcaatggtgacattaatgatactatatggcgcaaccacataaaacttt 35086689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 35090592 - 35090636
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  35090592 aatctcaataaatcaaacatgaagaccgctctgataccacttgtt 35090636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 35440008 - 35439972
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    ||||||||||||||||||||||||||||||| |||||    
T  35440008 gcgcctaaagaactctgatataattattaagatatgt 35439972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 29833421 - 29833389
Alignment:
Q  227 ccaataaatcaaacatgaagaccgctctgatac 259  Q
    |||||||||||||||||||||| ||||||||||    
T  29833421 ccaataaatcaaacatgaagactgctctgatac 29833389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 35085318 - 35085282
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  35085318 gcgcctaaagaattctgatataattattaagatatgt 35085282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 26959242 - 26959150
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 103  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||    
T  26959242 ttataattttggaactgcataagatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 26959150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 48165231 - 48165334
Alignment:
Q  10 attatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtc 109  Q
    |||||| |||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||  |||||| |||| ||||     
T  48165231 attataattttggagctgcataagatggatttcaatatggt-tttcttaatggtgacattaatgatacaatatggtgcaactaaataaagcttttgtgtt 48165329  T
Q  110 aattg 114  Q
    |||||    
T  48165330 aattg 48165334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 5186891 - 5186977
Alignment:
Q  28 cataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 114  Q
    ||||||||||||  ||||| ||||||||||||||   |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  5186891 cataagatggatgacaatacagtgtttcttaatgacaacattaatgatacaatatggtgcaactgaagaaaactttcgtgtcaattg 5186977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 10735461 - 10735368
Alignment:
Q  10 attatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 103  Q
    |||||| ||||| || | |||||||||||| |||||  | |||||||| ||| ||||||||||||| |||||||||||||| |||| |||||||    
T  10735461 attatagttttgaagctacataagatggatgtcaatgcattgtttcttcatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 10735368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 10949230 - 10949137
Alignment:
Q  10 attatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 103  Q
    |||||| ||||| || | |||||||||||| |||||  | |||||||| ||| ||||||||||||| |||||||||||||| |||| |||||||    
T  10949230 attatagttttgaagctacataagatggatgtcaatgcattgtttcttcatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 10949137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 49976804 - 49976760
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||    
T  49976804 aatcccaataaatcaaacatgaagaccactctgataccacttgtt 49976760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 24288196 - 24288158
Alignment:
Q  229 aataaatcaaacatgaagaccgctctgataccacatgtt 267  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  24288196 aataaatcaaacatgaagaccgctctgataccacttgtt 24288158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 26957441 - 26957405
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||||||| |||||||||||||| |||||    
T  26957441 gcgcctaaagaactctaatataattattaagatatgt 26957405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 26963283 - 26963319
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgatac 259  Q
    ||||| || ||||||||||||||||||||||||||||    
T  26963283 aatcctaacaaatcaaacatgaagaccgctctgatac 26963319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 48166700 - 48166736
Alignment:
Q  125 gcgcctaaagaactctgatataattattaagttatgt 161  Q
    |||||||||||| |||||||||||||||||| |||||    
T  48166700 gcgcctaaagaattctgatataattattaagatatgt 48166736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 4691 - 4590
Alignment:
Q  11 ttatacttttggagatgcataagatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtca 110  Q
    ||||| ||||| || | |||||||||||| |||||  | ||||||| |||||||||||||||||| ||||||||||||||  || |||||| | ||||||    
T  4691 ttatagttttgaagctacataagatggatgtcaatgcattgtttctcaatggtgacattaatgattcaatatggtgcaacttaagaaaactcttgtgtca 4592  T
Q  111 at 112  Q
    ||    
T  4591 at 4590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 172832 - 172868
Alignment:
Q  223 aatcccaataaatcaaacatgaagaccgctctgatac 259  Q
    |||||||||||||||||||||||||||||||||||||    
T  172832 aatcccaataaatcaaacatgaagaccgctctgatac 172868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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