View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4639_low_1 (Length: 363)
Name: NF4639_low_1
Description: NF4639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4639_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 52202602 - 52202935
Alignment:
| Q |
18 |
ttactactactacttgtggtccaaatgaaggcaatactatattcaaaatataattagctctatgagaatcaaattcaacgctcgacaatctgtgtatcat |
117 |
Q |
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| T |
52202602 |
ttactgctactacttgtggtccaaatgaaggtaatactatattcaaaatataattagctctatgagaatcaaattcaacgctcgacaatctgtgtatcat |
52202701 |
T |
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| Q |
118 |
ggaactttgc-aaaataacgcaatggacgttgaagcgaaaggaagcactgtttcacccgaggccaagtttaacgttcaagcttaatttagtttgtttgta |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52202702 |
ggaactttgccaaaataacgcaatggacgttgaagcgaaaggaagcactgtttcacccgaggccaagtttaacgttcaagcttaatttagtttgtttgta |
52202801 |
T |
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| Q |
217 |
atcacggcttataacaggaactaattcaataagatagtctcaactagtggtaagtttttgggtggacctgagagggcgggagacaatgccgatgcatcta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52202802 |
atcacggcttataacaggaactaattcaataagatagtctcaactagtggtaagtttttgggtggacctgagagggcgggagacaatgccgatgcatcta |
52202901 |
T |
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| Q |
317 |
aaaacccgtttggatgagatcagtgttgagattg |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52202902 |
aaaacccgtttggatgagatcagtgttgagattg |
52202935 |
T |
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