View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4640-Insertion-2 (Length: 979)

Name: NF4640-Insertion-2
Description: NF4640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4640-Insertion-2
NF4640-Insertion-2
[»] chr3 (13 HSPs)
chr3 (8-758)||(42572478-42573225)
chr3 (871-979)||(42574458-42574567)
chr3 (754-843)||(42574359-42574445)
chr3 (60-148)||(42577363-42577451)
chr3 (366-492)||(42577650-42577776)
chr3 (358-427)||(42570456-42570525)
chr3 (548-610)||(42577829-42577891)
chr3 (393-489)||(42607983-42608076)
chr3 (64-148)||(42570178-42570262)
chr3 (551-603)||(42570646-42570698)
chr3 (392-425)||(42594366-42594399)
chr3 (650-698)||(42570903-42570951)
chr3 (555-602)||(42594525-42594572)
[»] chr4 (1 HSPs)
chr4 (388-473)||(27871037-27871119)
[»] chr7 (1 HSPs)
chr7 (19-62)||(43713294-43713337)


Alignment Details
Target: chr3 (Bit Score: 643; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 8 - 758
Target Start/End: Original strand, 42572478 - 42573225
Alignment:
Q  8 gtaacatcacggtttaattttcaattaatttttgatcaggtatcatgacattgaacctccgatgaactttggagtacactttgtgccgaagaatacagca 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42572478 gtaacatcacggtttaattttcaattaatttctgatcaggtatcatgacattgaacctccgatgaactttggaatacactttgtgccgaagaatacagca 42572577  T
Q  108 tatatcattgagcgatatggaaaatactttaaaactcttccacacggctctcnnnnnnngaatccttttctcgataaaattgcttacgtgcataagatac 207  Q
    |||||||||||||||||||||||||||||||||||||||||   | ||||||       |||||||||||||||||||||||||||||||||||||||||    
T  42572578 tatatcattgagcgatatggaaaatactttaaaactcttcccgccagctctctttttttgaatccttttctcgataaaattgcttacgtgcataagatac 42572677  T
Q  208 gtacagaattactccttaacatccctagccatcctgttaggaccaaggataacgtcattatgttcatcaagggttgggttaattttgaggtaagtaaggc 307  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42572678 ggacagaattactccttaacatccctagccatcctattaggaccaaggataacgtcattatgttcatcaagggttgggttaattttgaggtaagtaaggc 42572777  T
Q  308 gtatcgatttttctgtctccaatcccaattttannnnnnnnncttccgtacttgttggtttgtttagtaactgtttttactggagtgcagattgtggatc 407  Q
    |||||||||||||||||||||||||| ||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42572778 gtatcgatttttctgtctccaatcccgattat---tttttttcttccgtacttgttggtttgtttagtaactgtttttactggagtgcagattgtggatc 42572874  T
Q  408 ctaagcttgcttcttatggagttgaagggagtcccctttatgctgtcagtcaggtggctaaaaccacaatccgtggtgaactccgcgagattactgtgaa 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  42572875 ctaagcttgcttcttatggagttgaagggagtcccctttatgctgtcagtcaggtggctaaaaccacaatccgtagtgaactccgcgagattactttgaa 42572974  T
Q  508 ggatatttggaacactaagatatcgtgggaattgaataataagattatggtgagtttagttccttgaactggttgtttgtgctatgctactcattttagc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42572975 ggatatttggaacactaagatatcgtgggaattgaataataagattatggtgagtttagttccttgaactggttgtttgtgctatgctactcattttagc 42573074  T
Q  608 attgatttattctttttctaaagatgcaatgtggtcttgagtccttaaacaatacatgatccagttggtgctttggatatgttcaagctaattcttgtca 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42573075 attgatttattctttttctaaagatgcaatgtggtcttgagtccttaaacaatacatgatccagttggtgctttggatatgttcaagctaattcttgtca 42573174  T
Q  708 taaacttaaatacattaaatacatagaaaagaggcgcaaatggaaggaaac 758  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42573175 taaacttaaatacattaaatacatagaaaagaggcacaaatggaaggaaac 42573225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 871 - 979
Target Start/End: Original strand, 42574458 - 42574567
Alignment:
Q  871 cccccacattacaaagagacatgacctctcaacttctgc-aaacaacttccaacataatatctttttcccttctaaatccagtagcccttctcctgc-ac 968  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||    
T  42574458 cccccacattacaaagagacatgacctctcaacttctgcaaaacaacttccaacataatatctttttcccctct-aatccagtagcccttctcctgcaac 42574556  T
Q  969 aaccttaattc 979  Q
    |||||||||||    
T  42574557 aaccttaattc 42574567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 754 - 843
Target Start/End: Original strand, 42574359 - 42574445
Alignment:
Q  754 gaaaccactaggtattattattaataccaacaatttctaccgcataataattatgtagcagtaagatgacgatgcaggcaggatagtcct 843  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||    
T  42574359 gaaaccactaggtatt---attaataccaacaatttctaccgcataatgattatgtagcagcaagatgacgatgaaggcaggatagtcct 42574445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 42577363 - 42577451
Alignment:
Q  60 gaacctccgatgaactttggagtacactttgtgccgaagaatacagcatatatcattgagcgatatggaaaatactttaaaactcttcc 148  Q
    ||||||||||||||||||||| |  ||||||||||| || | ||||  ||||||||||||||||||||||| |||||||||||||||||    
T  42577363 gaacctccgatgaactttggaattaactttgtgccggagcagacagtgtatatcattgagcgatatggaaagtactttaaaactcttcc 42577451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 366 - 492
Target Start/End: Original strand, 42577650 - 42577776
Alignment:
Q  366 tttgtttagtaactgtttttactggagtgcagattgtggatcctaagcttgcttcttatggagttgaagggagtcccctttatgctgtcagtcaggtggc 465  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| ||||||  ||| |  | ||||||||||||| ||  | || ||||    
T  42577650 tttgttttgtaactgtttttgttggagtgcagattgtggatcctaagcttgcttcctatggaactgaggataatcccctttatgctatccatgagctggc 42577749  T
Q  466 taaaaccacaatccgtggtgaactccg 492  Q
    | || |||||||||||| |||| ||||    
T  42577750 tcaagccacaatccgtgttgaaatccg 42577776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 358 - 427
Target Start/End: Original strand, 42570456 - 42570525
Alignment:
Q  358 cttgttggtttgtttagtaactgtttttactggagtgcagattgtggatcctaagcttgcttcttatgga 427  Q
    ||||||| ||||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  42570456 cttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaggcttgcttcttatgga 42570525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 548 - 610
Target Start/End: Original strand, 42577829 - 42577891
Alignment:
Q  548 aagattatggtgagtttagttccttgaactggttgtttgtgctatgctactcattttagcatt 610  Q
    |||||||||||||||||||||| || |||||||||||| || |||||||||||||||||||||    
T  42577829 aagattatggtgagtttagttcatttaactggttgtttatgttatgctactcattttagcatt 42577891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 42607983 - 42608076
Alignment:
Q  393 tgcagattgtggatcctaagcttgcttcttatggagttgaagggagtcccctttatgctgtcagtcaggtggctaaaaccacaatccgtggtgaact 489  Q
    ||||||||||||||||||| |||||||||||||| |||||   || |||||||||||| |||| |||| ||||| |||||||||| ||| |||||||    
T  42607983 tgcagattgtggatcctaaacttgcttcttatggggttga---gaatcccctttatgccgtcattcagctggctcaaaccacaatgcgtagtgaact 42608076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 42570178 - 42570262
Alignment:
Q  64 ctccgatgaactttggagtacactttgtgccgaagaatacagcatatatcattgagcgatatggaaaatactttaaaactcttcc 148  Q
    ||||||||||||||||| | |||||||||||| |  | |||| ||||||||| ||| |||||||||||||||||||| |||||||    
T  42570178 ctccgatgaactttggaattcactttgtgccggatcagacagtatatatcatcgagagatatggaaaatactttaaatctcttcc 42570262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 551 - 603
Target Start/End: Original strand, 42570646 - 42570698
Alignment:
Q  551 attatggtgagtttagttccttgaactggttgtttgtgctatgctactcattt 603  Q
    ||||||||||||||||| |||| |||||||||||| ||||||| |||||||||    
T  42570646 attatggtgagtttagtacctttaactggttgtttatgctatgttactcattt 42570698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 425
Target Start/End: Original strand, 42594366 - 42594399
Alignment:
Q  392 gtgcagattgtggatcctaagcttgcttcttatg 425  Q
    ||||||||||||||||||||||||||||||||||    
T  42594366 gtgcagattgtggatcctaagcttgcttcttatg 42594399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 650 - 698
Target Start/End: Original strand, 42570903 - 42570951
Alignment:
Q  650 ccttaaacaatacatgatccagttggtgctttggatatgttcaagctaa 698  Q
    ||||||| ||| ||||||||||||||||||||||||| | |||||||||    
T  42570903 ccttaaataatccatgatccagttggtgctttggataggatcaagctaa 42570951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 602
Target Start/End: Original strand, 42594525 - 42594572
Alignment:
Q  555 tggtgagtttagttccttgaactggttgtttgtgctatgctactcatt 602  Q
    ||||||||||||||||||||| ||||||||| | |||||||| |||||    
T  42594525 tggtgagtttagttccttgaattggttgtttatactatgctagtcatt 42594572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 27871119 - 27871037
Alignment:
Q  388 tggagtgcagattgtggatcctaagcttgcttcttatggagttgaagggagtcccctttatgctgtcagtcaggtggctaaaacca 473  Q
    |||||||||||||||||||||||| |||||||||||||| |||||   || ||||||||||||||||| |||| ||||| ||||||    
T  27871119 tggagtgcagattgtggatcctaaacttgcttcttatggggttga---gaatcccctttatgctgtcattcagctggctcaaacca 27871037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 43713294 - 43713337
Alignment:
Q  19 gtttaattttcaattaatttttgatcaggtatcatgacattgaa 62  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||    
T  43713294 gtttaattttcaattaatttccgatcaggcatcatgacattgaa 43713337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University