View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4640-Insertion-5 (Length: 388)

Name: NF4640-Insertion-5
Description: NF4640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4640-Insertion-5
NF4640-Insertion-5
[»] chr4 (7 HSPs)
chr4 (60-367)||(45858838-45859142)
chr4 (66-369)||(45876775-45877069)
chr4 (66-165)||(56208570-56208670)
chr4 (67-171)||(55705881-55705986)
chr4 (66-171)||(47293456-47293562)
chr4 (66-146)||(54304249-54304330)
chr4 (277-359)||(56208678-56208760)
[»] chr5 (3 HSPs)
chr5 (66-171)||(35854542-35854648)
chr5 (95-171)||(35802504-35802580)
chr5 (67-169)||(10521303-10521406)
[»] chr8 (2 HSPs)
chr8 (66-172)||(7972115-7972222)
chr8 (87-171)||(7961767-7961851)
[»] chr2 (2 HSPs)
chr2 (87-176)||(24357450-24357539)
chr2 (259-321)||(24357314-24357376)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 60 - 367
Target Start/End: Original strand, 45858838 - 45859142
Alignment:
Q  60 tttggatatagcaatagcacgagata-cccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttt 158  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |    
T  45858838 tttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaaaccctctcctgtgcagcctct 45858937  T
Q  159 tccatcttgtctacctagtgacaagacagtagctgtaagtaactattggatggatatacgagaaggaagaacagaaaacatggaaaatagatttttctta 258  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||    ||||||||| || |||||||||| ||| ||||||||||||||||||||||    
T  45858938 tccatcttgtctacctagtgacaggacagtagcggtaagtaactat----tggatatacaaggaggaagaacataaagcatggaaaatagatttttctta 45859033  T
Q  259 aataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctctcggcaaatagcactgcttca 358  Q
    |||||||||||||||||||||||| | ||  || || ||||||||||||||||||||||||||| |||| | |||||||| ||||||||||  |||||||    
T  45859034 aataaatttaaaacatacagtcatagctcgggaaagggcagctttgtctcgaaattgtttataagcattctgtgttctcttggcaaatagctttgcttca 45859133  T
Q  359 tgtggcctg 367  Q
    |||||||||    
T  45859134 tgtggcctg 45859142  T

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Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 66 - 369
Target Start/End: Original strand, 45876775 - 45877069
Alignment:
Q  66 tatagcaatagcacgagata-cccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatc 164  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||||||    
T  45876775 tatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccggtccaaaccctcccttgtgcaacctcttccatc 45876874  T
Q  165 ttgtctacctagtgacaagacagtagctgtaagtaactattggatggatatacgagaaggaagaacagaaaacatggaaaatagatttttcttaaataaa 264  Q
    |||||||||||| |||  || |||||||    ||||||||    |||| |||  ||  ||||||||||||||||  |||||||| ||||||||  || ||    
T  45876875 ttgtctacctagcgacgggatagtagct----gtaactat----tggacatagaagggggaagaacagaaaaca--gaaaatagctttttcttgtatgaa 45876964  T
Q  265 tttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctctcggcaaatagcactgcttcatgtggc 364  Q
    |||||||||||||||||||||||| || | ||| || || || |||||||||||||||| ||| | ||    || |||||||||| ||||||||||||||    
T  45876965 tttaaaacatacagtcattgatctggaaaaagccgccttatcacgaaattgtttataaaaattctgtgcagacttggcaaatagctctgcttcatgtggc 45877064  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 56208570 - 56208670
Alignment:
Q  66 tatagcaatagcacgagata-cccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatc 164  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||| ||||||||||||||||||||| |||||||    
T  56208570 tatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggtctaaaccctcccctgtgcaacctcttccatc 56208669  T
Q  165 t 165  Q
    |    
T  56208670 t 56208670  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 55705986 - 55705881
Alignment:
Q  67 atagcaatagcacgagata-cccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatct 165  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| || ||||||| ||||||||    
T  55705986 atagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccggtccaaaccctcccatgcgcaacctcttccatct 55705887  T
Q  166 tgtcta 171  Q
    ||||||    
T  55705886 tgtcta 55705881  T

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Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 47293562 - 47293456
Alignment:
Q  66 tatagcaatagcacgagatac-ccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatc 164  Q
    |||||||||||| || ||||  ||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||| |||||||    
T  47293562 tatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttactggtccaaatccttccctgtgcaacctcttccatc 47293463  T
Q  165 ttgtcta 171  Q
    |||||||    
T  47293462 ttgtcta 47293456  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 54304330 - 54304249
Alignment:
Q  66 tatagcaatagcacgagata-cccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccc 146  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||  |||||  ||| |||||||| ||||||||| |||||    
T  54304330 tatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaaccttcccc 54304249  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 56208678 - 56208760
Alignment:
Q  277 agtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctctcggcaaatagcactgcttcat 359  Q
    |||||||||||| || ||||| || || ||||||||||||||||||| || || || |||||  ||||||||| |||||||||    
T  56208678 agtcattgatctggaaagagccgcattatctcgaaattgtttataaatatgttgtgctctcttagcaaatagctctgcttcat 56208760  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 35854648 - 35854542
Alignment:
Q  66 tatagcaatagcacgagata-cccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatc 164  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||| ||||    
T  35854648 tatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatc 35854549  T
Q  165 ttgtcta 171  Q
    |||||||    
T  35854548 ttgtcta 35854542  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  95 agcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 171  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 10521406 - 10521303
Alignment:
Q  67 atagcaatagcacgagata-cccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatct 165  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||| ||| |||||| |||||  |||| || || || |||||    
T  10521406 atagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaaatcctcctatgtggaatctctttcatct 10521307  T
Q  166 tgtc 169  Q
    ||||    
T  10521306 tgtc 10521303  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 7972115 - 7972222
Alignment:
Q  66 tatagcaatagcacgagatac-ccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatc 164  Q
    ||||||||||||||| ||||  ||||  |||||||| |||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||| |||||||    
T  7972115 tatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagatactgcatctttaccggtccaaatcctcctctgtgcaacctcttccatc 7972214  T
Q  165 ttgtctac 172  Q
    ||||||||    
T  7972215 ttgtctac 7972222  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 7961767 - 7961851
Alignment:
Q  87 ccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 171  Q
    |||||||||||||| |||||| ||| ||||| |||||| ||||| |||||||  ||||| |||||||||| ||||||||||||||    
T  7961767 ccaccaatagcatcgaccaaatcattagatattgcatctttaccagtccaaattctcccttgtgcaacctcttccatcttgtcta 7961851  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 24357539 - 24357450
Alignment:
Q  87 ccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctag 176  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  24357539 ccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaaactctcccctgtgctaccttctccatcttgtccacctag 24357450  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 24357376 - 24357314
Alignment:
Q  259 aataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttata 321  Q
    |||||||||| ||||||||||||| ||||| || | ||| || ||||||||||||||||||||    
T  24357376 aataaatttagaacatacagtcatagatctggataaagctgccttgtctcgaaattgtttata 24357314  T

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