View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4640-Insertion-7 (Length: 109)

Name: NF4640-Insertion-7
Description: NF4640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4640-Insertion-7
NF4640-Insertion-7
[»] chr3 (5 HSPs)
chr3 (8-109)||(14864624-14864725)
chr3 (8-109)||(17130533-17130634)
chr3 (8-109)||(12034587-12034689)
chr3 (8-84)||(19236269-19236345)
chr3 (15-73)||(10553745-10553803)
[»] chr1 (3 HSPs)
chr1 (8-109)||(21705058-21705159)
chr1 (8-109)||(20852305-20852407)
chr1 (8-109)||(20858931-20859033)
[»] chr7 (5 HSPs)
chr7 (11-109)||(10897423-10897521)
chr7 (8-109)||(29182291-29182392)
chr7 (9-109)||(2965766-2965868)
chr7 (8-109)||(16089856-16089958)
chr7 (8-109)||(20907600-20907702)
[»] chr6 (4 HSPs)
chr6 (8-109)||(20009120-20009222)
chr6 (8-109)||(20011179-20011281)
chr6 (8-84)||(9100272-9100348)
chr6 (8-84)||(29096643-29096719)
[»] scaffold0343 (1 HSPs)
scaffold0343 (8-109)||(376-478)
[»] chr8 (1 HSPs)
chr8 (8-109)||(24321842-24321944)
[»] chr5 (6 HSPs)
chr5 (8-109)||(19235682-19235784)
chr5 (8-109)||(22459937-22460039)
chr5 (8-109)||(22466561-22466663)
chr5 (8-84)||(20771748-20771824)
chr5 (8-84)||(24931129-24931205)
chr5 (8-73)||(20780523-20780588)
[»] chr2 (3 HSPs)
chr2 (12-106)||(29280781-29280875)
chr2 (8-106)||(9357-9456)
chr2 (8-109)||(26883986-26884090)
[»] scaffold0053 (1 HSPs)
scaffold0053 (8-109)||(80673-80774)
[»] chr4 (1 HSPs)
chr4 (8-109)||(16148013-16148114)
[»] scaffold0085 (1 HSPs)
scaffold0085 (8-109)||(49-151)
[»] scaffold0720 (1 HSPs)
scaffold0720 (8-109)||(4408-4512)
[»] scaffold0348 (1 HSPs)
scaffold0348 (8-109)||(13743-13845)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 5e-44; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 5e-44
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 14864624 - 14864725
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaacccg 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  14864624 ctatcatcataatcattcatcaattatagtataacatcattagcaacttcaacatccaacagtaatataaacagtaagcaacgactcatgcaacaacccg 14864723  T
Q  108 ac 109  Q
    ||    
T  14864724 ac 14864725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 17130533 - 17130634
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaacccg 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  17130533 ctatcatcataatcattaatcaattatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaacgactcatgcaacaacccg 17130632  T
Q  108 ac 109  Q
    ||    
T  17130633 ac 17130634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 12034689 - 12034587
Alignment:
Q  8 ctatcatcataatcattcatcaattata-gtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaaccc 106  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| |||| |||||||    
T  12034689 ctatcatcatgatcattcatcaattataagtatagcatcattagcaacttcaacatccaacaataataaaaacagtaaacaacgactcatgcgacaaccc 12034590  T
Q  107 gac 109  Q
    |||    
T  12034589 gac 12034587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 19236345 - 19236269
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaa 84  Q
    ||||||||||||||||||| || | ||| ||||||||||||| |||||||| ||||||||| |||| | ||||||||    
T  19236345 ctatcatcataatcattcagcagtcataatatagcatcattaacaacttcatcatccaacaataatggcaacagtaa 19236269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 10553745 - 10553803
Alignment:
Q  15 cataatcattcatcaattat-agtatagcatcattagcaacttcaacatccaacagtaat 73  Q
    |||||||||||||||| ||| |||||| ||| ||||||||||||| || |||||||||||    
T  10553745 cataatcattcatcaaatataagtataacattattagcaacttcagca-ccaacagtaat 10553803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 5e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 5e-44
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 21705058 - 21705159
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaacccg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  21705058 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaacgactcatgcaacaacccg 21705157  T
Q  108 ac 109  Q
    ||    
T  21705158 ac 21705159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 20852407 - 20852305
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||    
T  20852407 ctatcatcttaatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaaacgactcatgcaacaaccc 20852308  T
Q  107 gac 109  Q
    |||    
T  20852307 gac 20852305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 20859033 - 20858931
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||    
T  20859033 ctatcatcttaatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaaacgactcatgcaacaaccc 20858934  T
Q  107 gac 109  Q
    |||    
T  20858933 gac 20858931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 10897521 - 10897423
Alignment:
Q  11 tcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaacccgac 109  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  10897521 tcataataataattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaacgactcatgcaacaacccgac 10897423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 4e-32
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 29182392 - 29182291
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaacccg 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||| |||  ||||||||    
T  29182392 ctatcatcataatcattcagcaattatagtatagcatcattagcaacttcatcatccaacagtaatagaaatagtaaacaatgactcatgtgacaacccg 29182293  T
Q  108 ac 109  Q
    ||    
T  29182292 ac 29182291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 2965766 - 2965868
Alignment:
Q  9 tatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaat-agaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| | ||||||| ||||||||||||    
T  2965766 tatcatcttaatcattcatcaattatagtatagcatcgttagcaacttcaacatccaacagtaataaaaaacagtaaacaaacgactcatgcaacaaccc 2965865  T
Q  107 gac 109  Q
    |||    
T  2965866 gac 2965868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 7e-28
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 16089856 - 16089958
Alignment:
Q  8 ctatcatcataa-tcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaaccc 106  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||| |||| |||| |||||||    
T  16089856 ctatcatcataaatcattcagcaattatagtatagcatcattagcaacttcatcatccaacagtaatcgaaatagtaaacaatgactcatgcgacaaccc 16089955  T
Q  107 gac 109  Q
    |||    
T  16089956 gac 16089958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 20907702 - 20907600
Alignment:
Q  8 ctatcatcataatcattcatcaattata-gtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaaccc 106  Q
    |||||||||  |||||| |||||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||| |||| ||| ||||||||||||    
T  20907702 ctatcatcaggatcatttatcaattataagtatagcatcattagcaacttcaacatccaatggtaataaaaacagtaaacaacaactcatgcaacaaccc 20907603  T
Q  107 gac 109  Q
    |||    
T  20907602 gac 20907600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 2e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 20009222 - 20009120
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||    
T  20009222 ctatcatcttaatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaaacgactcatgcaacaaccc 20009123  T
Q  107 gac 109  Q
    |||    
T  20009122 gac 20009120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 20011281 - 20011179
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||    
T  20011281 ctatcatcttaatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaaacgactcatgcaacaaccc 20011182  T
Q  107 gac 109  Q
    |||    
T  20011181 gac 20011179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 9100348 - 9100272
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaa 84  Q
    ||||||||||||||||||| || | ||| ||||||||||||| |||||||| ||||||||| |||| | ||||||||    
T  9100348 ctatcatcataatcattcagcagtcataatatagcatcattaacaacttcatcatccaacaataatggcaacagtaa 9100272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 29096643 - 29096719
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaa 84  Q
    ||||||||||||||||||| || | ||| ||||||||||||| |||||||| ||||||||| |||| | ||||||||    
T  29096643 ctatcatcataatcattcagcagtcataatatagcatcattaacaacttcatcatccaacaataatggcaacagtaa 29096719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 75; Significance: 5e-35; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 478 - 376
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||    
T  478 ctatcatcttaatcattcatcaaatatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaaacgactcatgcaacaaccc 379  T
Q  107 gac 109  Q
    |||    
T  378 gac 376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 5e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 24321944 - 24321842
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||    
T  24321944 ctatcatcttaatcattcatcaaatatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaaacgactcatgcaacaaccc 24321845  T
Q  107 gac 109  Q
    |||    
T  24321844 gac 24321842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 5e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 19235682 - 19235784
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||    
T  19235682 ctatcatcttaatcattcaccaattatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaaacgactcatgcaacaaccc 19235781  T
Q  107 gac 109  Q
    |||    
T  19235782 gac 19235784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 22459937 - 22460039
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||    
T  22459937 ctatcatcttaatcattcatcaattatagtatagcatcgttatcaacttcaacatccaacagtaataaaaacagtaaacaaacgactcatgcaacaaccc 22460036  T
Q  107 gac 109  Q
    |||    
T  22460037 gac 22460039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 22466561 - 22466663
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    |||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||    
T  22466561 ctatcatcttaatcattcatcaattatagtatagcatcgttatcgacttcaacatccaacagtaataaaaacagtaaacaaacgactcatgcaacaaccc 22466660  T
Q  107 gac 109  Q
    |||    
T  22466661 gac 22466663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 20771748 - 20771824
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaa 84  Q
    ||||||||||||||||||| || | ||| ||||||||||||| |||||||| ||||||||| |||| | ||||||||    
T  20771748 ctatcatcataatcattcagcagtcataatatagcatcattaacaacttcatcatccaacaataatggcaacagtaa 20771824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 24931205 - 24931129
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaa 84  Q
    ||||||||||||||||||| || | ||| ||||||||||||| |||||||| ||||||||| |||| | ||||||||    
T  24931205 ctatcatcataatcattcagcagtcataatatagcatcattaacaacttcatcatccaacaataatggcaacagtaa 24931129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 20780523 - 20780588
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaat 73  Q
    ||||||||||||||||||| || | ||| ||||||||||||| |||||||| ||||||||| ||||    
T  20780523 ctatcatcataatcattcagcagtcataatatagcatcattaacaacttcatcatccaacaataat 20780588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 5e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 29280781 - 29280875
Alignment:
Q  12 catcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaaccc 106  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||    
T  29280781 catcgtaatcattcatcaagtatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaacgactcatgcaacaaccc 29280875  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 9357 - 9456
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagc-aacgacttatgcaacaaccc 106  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||    
T  9357 ctatcatcttaatcattcatcaaatatagtatagcatcattagcaacttcaacatccaacagtaataaaaacagtaaacaaacgactcatgcaacaaccc 9456  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 26883986 - 26884090
Alignment:
Q  8 ctatcatcataatcattcatcaattat---agtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaac 104  Q
    ||||||||||||| |||||||||||||   |||||| |||||||| |||| |||||||| ||  |||||| ||||    | |||||||| ||||||||||    
T  26883986 ctatcatcataataattcatcaattatataagtatatcatcattaacaacatcaacatcaaatggtaataaaaaccaacaacaacgactcatgcaacaac 26884085  T
Q  105 ccgac 109  Q
     ||||    
T  26884086 tcgac 26884090  T

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Target: scaffold0053 (Bit Score: 74; Significance: 2e-34; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 80774 - 80673
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaacccg 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||| |||| ||||||||    
T  80774 ctatcatcataatcattcagcaattatagtatagcatcattagcaacttcatcatccaacagtaatagaaatagtaaacaatgactcatgcgacaacccg 80675  T
Q  108 ac 109  Q
    ||    
T  80674 ac 80673  T

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Target: chr4 (Bit Score: 74; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 16148114 - 16148013
Alignment:
Q  8 ctatcatcataatcattcatcaattatagtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaacccg 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||| |||| ||||||||    
T  16148114 ctatcatcataatcattcagcaattatagtatagcatcattagcaacttcatcatccaacagtaatagaaatagtaaacaatgactcatgcgacaacccg 16148015  T
Q  108 ac 109  Q
    ||    
T  16148014 ac 16148013  T

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Target: scaffold0085 (Bit Score: 63; Significance: 7e-28; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 63; E-Value: 7e-28
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 151 - 49
Alignment:
Q  8 ctatcatcataatcattcatcaattata-gtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaaccc 106  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||| |||||  ||||||| ||||||||||||    
T  151 ctatcatcatgatcattcatcaattataagtatagcatcattagcaacttctacatccaatagtaataaaaatagtaaataacgactcatgcaacaaccc 52  T
Q  107 gac 109  Q
    |||    
T  51 gac 49  T

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Target: scaffold0720 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 4512 - 4408
Alignment:
Q  8 ctatcatcataatcattcatcaattata---gtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaac 104  Q
    ||||||||||||| ||||||||||||||   |||||  ||||||| |||| |||||||||||  ||| || || ||| || |||||||||||||||||||    
T  4512 ctatcatcataataattcatcaattataagagtataatatcattaacaacatcaacatccaatggtagtaaaaccagcaaacaacgacttatgcaacaac 4413  T
Q  105 ccgac 109  Q
     ||||    
T  4412 tcgac 4408  T

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Target: scaffold0348 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 13743 - 13845
Alignment:
Q  8 ctatcatcataatcattcatcaattat-agtatagcatcattagcaacttcaacatccaacagtaatagaaacagtaagcaacgacttatgcaacaaccc 106  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||   |||||||||  |||||| || | | || |||||||| |||||||||| |    
T  13743 ctatcatcataatcattcatcagttataagtataacatcattagcaacaataacatccaatggtaataaaaccggcaaccaacgactcatgcaacaactc 13842  T
Q  107 gac 109  Q
    |||    
T  13843 gac 13845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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