View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4640-Insertion-8 (Length: 108)
Name: NF4640-Insertion-8
Description: NF4640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4640-Insertion-8 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 99; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 52083220 - 52083322
Alignment:
| Q |
6 |
caagagatgaaagcaaatggtctgatatacgcaaagacgacaaatcaagacaggtcagacctttcaaattccttaaagagctaatcatcttcgaagtagc |
105 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52083220 |
caagagatgagagcaaatggtctgatatacgcaaagacgacaaatcaagacaggtcagacctttcaaattccttaaagagctaatcatcttcgaagtagc |
52083319 |
T |
|
| Q |
106 |
gta |
108 |
Q |
| |
|
||| |
|
|
| T |
52083320 |
gta |
52083322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 52093416 - 52093510
Alignment:
| Q |
6 |
caagagatgaaagcaaatggtctgatatacgcaaagacgacaaatcaagacaggtcagacctttcaaattccttaaagagctaatcatcttcgaa |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52093416 |
caagagatgagagcaaatgatctgatatacgcgcagacgacaaatcaagacaagtcaaacctttcaaattccttagagagctaatcatcttcgaa |
52093510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University