View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4640_high_1 (Length: 469)
Name: NF4640_high_1
Description: NF4640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4640_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 205 - 456
Target Start/End: Complemental strand, 42572439 - 42572183
Alignment:
| Q |
205 |
atactgagtggctatgaggaattaacgagcaatatttttaaataatttccaaatgacaaaaa-tccatactcaagcaacgtaaactgtgtctgtgtccaa |
303 |
Q |
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| T |
42572439 |
atactgagtggctatgaggaatcaacgagcaatatttttaaataatttccaaatgacaaaaaatccatactcaagcaacgtaaactgtgtctgtgtccaa |
42572340 |
T |
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| Q |
304 |
gtacttgccaggaaggaaacagtaagcaatccatgaacaagagaagctataattaatgtaaggattagtcaaatgcttaaccaagggattttgcttctcc |
403 |
Q |
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| T |
42572339 |
gtacttgccaggaaggaaacagtaagcaatccatgaacaaaagaagctataattaatgtaaggattagtcaaatacttaatcaagggattttgcttctcc |
42572240 |
T |
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| Q |
404 |
ccttatttatt----tattaggattatgattccgttagttaagaaatttgtgtccct |
456 |
Q |
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| T |
42572239 |
ccttatttatttatttattaggattatgattccattagttaagaaatttgtgtccct |
42572183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 394
Target Start/End: Complemental strand, 42597642 - 42597487
Alignment:
| Q |
237 |
tatttttaaataatttccaaatgacaaaaa--tccatactcaagcaac-gtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaagcaat |
333 |
Q |
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| T |
42597642 |
tatttttaaataatattcaaatgacaaaaaattccatactcaagcaaatgtagattgtgt-tgtgtccaagtatttggcaggaa----acattaagcaat |
42597548 |
T |
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| Q |
334 |
ccatgaacaagagaagctataattaatgtaaggattagtcaaatgcttaaccaagggattt |
394 |
Q |
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| T |
42597547 |
ccatgaaaaagagaagctagaattcatgtaaggattagtcaaatccttaaccgagggattt |
42597487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 42572472 - 42572435
Alignment:
| Q |
238 |
atttttaaataatttccaaatgaca-aaaatccatact |
274 |
Q |
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| T |
42572472 |
atttttaaataatttccaaatgacaaaaaatccatact |
42572435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 181 - 456
Target Start/End: Complemental strand, 43713157 - 43712879
Alignment:
| Q |
181 |
gtgtggttaggagtgaaaattgaaatactgagtggctatgaggaa-------ttaacgagcaatatttttaaataatttccaaatgacaaaaatccatac |
273 |
Q |
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| T |
43713157 |
gtgtggttaggagttaaagttgaaatactgagtggctatgaagcaaaaagcattaacaagcaatatttttaaatattttccaaatgacaaagttccatac |
43713058 |
T |
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| Q |
274 |
tcaagcaac-gtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaagcaatccatgaacaagagaagctataattaatgtaaggattagt |
372 |
Q |
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| T |
43713057 |
tcaagcaaatgtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaagcaatccatgaacaagagaagctata-----tgtaaggattagt |
43712963 |
T |
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| Q |
373 |
caaatgcttaaccaagggattttgcttctccccttatttatttattaggattatgattccgttagttaagaaatttgtgtccct |
456 |
Q |
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| T |
43712962 |
caaatccttaaccaagggatttagcttcccctcttatttatttattaggattatgattccgttagttacgaaatttgtgtccct |
43712879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 43713286 - 43713145
Alignment:
| Q |
17 |
ttacatataatattgcagtgaaacctcattaagtagaataaaattaactaacaaggagtaagcattaatgtaccgcttgcgcaagtgagcatagcgaatg |
116 |
Q |
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| T |
43713286 |
ttacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcgaaaatgagcatagcgaatg |
43713187 |
T |
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| Q |
117 |
gaggaaaatcgagagaggggagggatgaagtgtggttaggag |
158 |
Q |
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| T |
43713186 |
gaggaaaatcgagagaggggagggatgaggtgtggttaggag |
43713145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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