View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4640_high_4 (Length: 253)
Name: NF4640_high_4
Description: NF4640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4640_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10501772 - 10501533
Alignment:
| Q |
1 |
ttaagattgtaactataacagtctagagatgtcttagactcgtcaaaacttctttgtatgatcccaaatactctacttattcatcttaaaaagataattt |
100 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| || | ||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
10501772 |
ttaagattgtaagcataacagcctagagacgtcttagactcgtcaaaacttctttgtttggttccagatactccacttattcaccttaaaaagataattt |
10501673 |
T |
|
| Q |
101 |
ttaaccac-------cttgaaaaaataaatagaatagcgataattccttaccgtcaattctttgttgcgtgagcgaggaagttcttgaatgtatttttca |
193 |
Q |
| |
|
|||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10501672 |
ctaactactatattacttgaaaaaa--aatagaatagcgataattccttaccgtcaattctttgttgcgtgagcgaggaagttcttgaatgtatttttca |
10501575 |
T |
|
| Q |
194 |
aaatcatgtaatttgactttcccttttacctcaatagattca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10501574 |
aaatcatgtaatttgactttcccttttacctcaatagattca |
10501533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 24403586 - 24403470
Alignment:
| Q |
116 |
aaataaatagaatagcgataattccttaccgtcaattctttgttgcgtgagcgaggaagttcttgaatgtatttttcaaaatcatgtaatttgactttcc |
215 |
Q |
| |
|
||||||||| |||| ||| |||| |||||| | | ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
24403586 |
aaataaatataataacgagaatttcttaccataagttctttgttgcatgagagaggaagttcttgaatgtatttttcaaaatcttgtaatttgacagtcc |
24403487 |
T |
|
| Q |
216 |
cttttacctcaatagat |
232 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
24403486 |
ctttcactacaatagat |
24403470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 28001076 - 28001179
Alignment:
| Q |
116 |
aaataaatagaatagcgataattccttaccgtcaattctttgttgcgtgagcgaggaagttcttgaatgtatttttcaaaatcatgtaatttgactttcc |
215 |
Q |
| |
|
|||||||||||||| | ||| || |||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |
|
|
| T |
28001076 |
aaataaatagaataacaatattttcttaccatcaatcaattcttgcgtgagcgaggaagttcttgaatgtatttttcaaaattatgtaatttaactctcc |
28001175 |
T |
|
| Q |
216 |
cttt |
219 |
Q |
| |
|
|||| |
|
|
| T |
28001176 |
cttt |
28001179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 27991020 - 27991124
Alignment:
| Q |
116 |
aaataaatagaatagcgataattccttaccgtcaattctttgttgcgtgagcgaggaagttcttgaatgta-tttttcaaaatcatgtaatttgactttc |
214 |
Q |
| |
|
|||||||||||||| | ||| || |||||| | ||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| || |
|
|
| T |
27991020 |
aaataaatagaataacaatattttcttaccatgaatcgtttcttgcgtgagcgaggaatttcttgaatgtattttttcaaaatcatgtaatttaactctc |
27991119 |
T |
|
| Q |
215 |
ccttt |
219 |
Q |
| |
|
||||| |
|
|
| T |
27991120 |
ccttt |
27991124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University