View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4640_low_2 (Length: 449)
Name: NF4640_low_2
Description: NF4640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4640_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 180 - 435
Target Start/End: Original strand, 37624578 - 37624834
Alignment:
| Q |
180 |
tgtcttgccttttttatctgttgataaaattgttgtcacgacatagattaacattgannnnnnn-cttttaaattacattattaagtttaactttcttta |
278 |
Q |
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| T |
37624578 |
tgtcttgccttttttatttgttgataaaattgttgtcacgacatagattaacattgattttttttcttttaaattacattattaagtttaactttcttta |
37624677 |
T |
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| Q |
279 |
tagatagcacctatcttattttttggtttgaaagcttgtggaaaggccctggaccgcaaaagaaagtaacaatgaaacaatggtacatgcatgttaaaag |
378 |
Q |
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| T |
37624678 |
tagatagcacctatcttattttttggtttgaaagcttgtggaaaggccctggaccgcaaaagaaactgacaatgaaacaatggtacatgcatgttaaaag |
37624777 |
T |
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| Q |
379 |
ttcctttcaagtgcaacgcaatatgggaccaacaactataactatttgagtctatct |
435 |
Q |
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| T |
37624778 |
ttcctttcaagtgcaacgcaatatgggaccaacaactataactatttgagtctatct |
37624834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 37624448 - 37624579
Alignment:
| Q |
10 |
catcatcatatgtatttttggtataaagtaaaaactcatcataattagggttttggctcaagactcctatgaaattaatctttccatagagtgtatatga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37624448 |
catcatcatatgtatttttggtataaagtaaaaactcatcataattagggttttggctcaagactcctatgaaattaatctttccatagagtgtatatga |
37624547 |
T |
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| Q |
110 |
catagattgattgaagcacaaactcaacaatg |
141 |
Q |
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| T |
37624548 |
catagattgattgaagcacagactcaacaatg |
37624579 |
T |
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