View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4640_low_6 (Length: 238)
Name: NF4640_low_6
Description: NF4640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4640_low_6 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 2083092 - 2083240
Alignment:
| Q |
90 |
gagtctttgggataccacaatctttgagcattgttgtttgttccttcttttgtcgtacccaaccatgcatctttgtcctaaacacaaaacccgacactac |
189 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2083092 |
gagtctttgggataccacaatctttcagcattgttgtttgttccttcttttgtcgtacccaaccatgcatctttgtcctaaacacaaaacccgacactac |
2083191 |
T |
|
| Q |
190 |
taaatccaatagccaaccttcacccatgtgtatcattttaacttaatct |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2083192 |
taaatccaatagccaaccttcacccatgtgtatcattttaacttaatct |
2083240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 2083016 - 2083066
Alignment:
| Q |
19 |
atcaatgagtgaaacatgcattatcatggaataaagaaaaagttccatatg |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2083016 |
atcaatgagtgaaacatgcattatcatggaataaagaaaaagttccatatg |
2083066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University