View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4641-Insertion-1 (Length: 875)

Name: NF4641-Insertion-1
Description: NF4641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4641-Insertion-1
NF4641-Insertion-1
[»] chr8 (8 HSPs)
chr8 (6-234)||(473796-474017)
chr8 (720-875)||(473255-473410)
chr8 (351-456)||(473585-473688)
chr8 (512-619)||(473452-473559)
chr8 (6-86)||(479411-479491)
chr8 (508-573)||(1838407-1838472)
chr8 (508-573)||(30587328-30587393)
chr8 (508-565)||(31671648-31671705)
[»] chr7 (4 HSPs)
chr7 (691-875)||(41521186-41521356)
chr7 (508-619)||(41521003-41521114)
chr7 (506-566)||(7964510-7964570)
chr7 (508-562)||(1824588-1824642)
[»] chr5 (3 HSPs)
chr5 (694-856)||(1242712-1242869)
chr5 (506-619)||(1242951-1243063)
chr5 (508-563)||(6689898-6689953)
[»] chr4 (1 HSPs)
chr4 (508-573)||(3607931-3607996)
[»] chr1 (4 HSPs)
chr1 (519-619)||(22206441-22206541)
chr1 (508-572)||(23920804-23920870)
chr1 (508-542)||(4798689-4798723)
chr1 (508-562)||(13842998-13843052)
[»] chr6 (2 HSPs)
chr6 (508-562)||(6632744-6632798)
chr6 (508-561)||(32868836-32868889)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 1e-80; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 474017 - 473796
Alignment:
Q  6 catatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgctttccaaaacacgttgctcaaagnnnn 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  474017 catatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgctttccaaaacacgttgctcaaagtttt 473918  T
Q  106 nnnnnnnnnnnnnngggtgaatataaagagat--ggtaaaccttatttatatatgcaatcctaggctttattattattattttttgttgaagtaaactaa 203  Q
                  ||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  473917 ttttt---------gggtgaatataaagagatatggtaaaccttatttatatatacaatcctaggcttttttattattattttttgttgaagtaaactaa 473827  T
Q  204 agttcttatgctctccaaacacgattgcacg 234  Q
    |||||||||||||||||||||||||||||||    
T  473826 agttcttatgctctccaaacacgattgcacg 473796  T

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Target: chr8; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 720 - 875
Target Start/End: Complemental strand, 473410 - 473255
Alignment:
Q  720 ttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctac 819  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  473410 ttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctac 473311  T
Q  820 ccttgaactattttactacttcccaacaactctcatcgaaattgtttcatttatat 875  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  473310 ccttgaactattttactaattcccaacaactctcatctaaattgtttcatttatat 473255  T

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Target: chr8; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 351 - 456
Target Start/End: Complemental strand, 473688 - 473585
Alignment:
Q  351 catacaaggtgagtagtatattgtttaagggctcaagttgcttaccatttggatcaaatgtatgtagtgaaaagtcatttaacgatggtagaccaatttg 450  Q
    |||| ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  473688 catataaggtgagtagtat--tgtttaagggttcaagttgcttaccatttggatcaaatgtatgtagtgaaaagtcatttaacgatggtagaccaatttg 473591  T
Q  451 tttttg 456  Q
    ||||||    
T  473590 tttttg 473585  T

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Target: chr8; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 512 - 619
Target Start/End: Complemental strand, 473559 - 473452
Alignment:
Q  512 atagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattatttcttaat 611  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  473559 atagataataataaagcaagtttagtgttttggcaagtttgtcatttgtcatcttttaagaacaaccttccttcatactctttctaaattatttcttaat 473460  T
Q  612 aaggaaac 619  Q
    ||||||||    
T  473459 aaggaaac 473452  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 479491 - 479411
Alignment:
Q  6 catatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgctttccaaa 86  Q
    |||||||||||| |||||| |||||| |||||||||| |  || |||||||||||||||||||||||||||||||||||||    
T  479491 catatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctttgctttccaaa 479411  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 508 - 573
Target Start/End: Complemental strand, 1838472 - 1838407
Alignment:
Q  508 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaa 573  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||    
T  1838472 atctatagataataataaagcaaacttagtattttggcaagtttgccatttgtcatcttctaagaa 1838407  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 508 - 573
Target Start/End: Complemental strand, 30587393 - 30587328
Alignment:
Q  508 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaa 573  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||  |||||||||||| ||||||    
T  30587393 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaa 30587328  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 565
Target Start/End: Complemental strand, 31671705 - 31671648
Alignment:
Q  508 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatct 565  Q
    |||||||||||||||||||||||||||| | ||| ||||||| || ||||| ||||||    
T  31671705 atctatagataataataaagcaagcttaatttttgggcaaatatgacatttatcatct 31671648  T

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Target: chr7 (Bit Score: 130; Significance: 7e-67; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 691 - 875
Target Start/End: Original strand, 41521186 - 41521356
Alignment:
Q  691 cgatatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttc 790  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  41521186 cgatatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaata------ 41521279  T
Q  791 gactgccgcttcagcttttgttcttctacccttgaactattttactacttcccaacaactctcatcgaaattgtttcatttatat 875  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  41521280 --------cttcagcttttgttcttctacccttgaactattttactacttcccaacaagtctcatctaaattgtttcatttatat 41521356  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 508 - 619
Target Start/End: Original strand, 41521003 - 41521114
Alignment:
Q  508 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattatttct 607  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||| || ||||||||||  |||||||||||||||||||||||||    
T  41521003 atctatagataataataaaggaagtttagtattttggcaagtttgccatttgtcatcttctaggaacaaccttccttgatactctttctaaattatttct 41521102  T
Q  608 taataaggaaac 619  Q
    ||||||||||||    
T  41521103 taataaggaaac 41521114  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 506 - 566
Target Start/End: Complemental strand, 7964570 - 7964510
Alignment:
Q  506 ttatctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatctt 566  Q
    |||| |||||||||||||||||||||||||||||| |||||| | || |||||||||||||    
T  7964570 ttatttatagataataataaagcaagcttagtattatggcaagtatgacatttgtcatctt 7964510  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 1824642 - 1824588
Alignment:
Q  508 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtca 562  Q
    ||||||||||||||||||||||| || ||||||||| ||| | || |||||||||    
T  1824642 atctatagataataataaagcaaactaagtattttgacaagtatgccatttgtca 1824588  T

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Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 694 - 856
Target Start/End: Complemental strand, 1242869 - 1242712
Alignment:
Q  694 tatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattca-tcttttgatttcaccattttctaaaaatacttttcga 792  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  1242869 tatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatttttttaatttcaccattttctaaaaatacttttcga 1242770  T
Q  793 ctgccgcttcagcttttgttcttctacccttgaactattttactacttcccaacaactctcatc 856  Q
    |  |||||||||||||||||||||||||      | |||||||||||||||||||| |||||||    
T  1242769 ccaccgcttcagcttttgttcttctacc------ccattttactacttcccaacaagtctcatc 1242712  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 506 - 619
Target Start/End: Complemental strand, 1243063 - 1242951
Alignment:
Q  506 ttatctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattattt 605  Q
    ||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||||| |||||||| || |||||||||||| ||||| ||||    
T  1243063 ttatctatagataataataaagcaaacttaatattttggtaagtttgtcatttgtcatcttttaggaacaacc-ttcttgatactctttgtaaataattt 1242965  T
Q  606 cttaataaggaaac 619  Q
    ||| ||||||||||    
T  1242964 ctttataaggaaac 1242951  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 6689953 - 6689898
Alignment:
Q  508 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcat 563  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  6689953 atctacagataataataaagcaaacttagtattttggcaagtttgtcatctgtcat 6689898  T

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Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 508 - 573
Target Start/End: Complemental strand, 3607996 - 3607931
Alignment:
Q  508 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaa 573  Q
    ||||||||||||||||||| ||| || | ||||||||||| |||||||||||||||||||||||||    
T  3607996 atctatagataataataaaacaaactcattattttggcaagtttgtcatttgtcatcttttaagaa 3607931  T

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Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 519 - 619
Target Start/End: Complemental strand, 22206541 - 22206441
Alignment:
Q  519 ataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattatttcttaataaggaaa 618  Q
    ||||||||||||  |||||  |||||||| || | ||||||||||||| ||||| || ||||  |||| ||||||||||||||||| |||||||||||||    
T  22206541 ataataaagcaaagttagttctttggcaagttagacatttgtcatcttctaagagcatccttccttgacactctttctaaattattgcttaataaggaaa 22206442  T
Q  619 c 619  Q
    |    
T  22206441 c 22206441  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 23920870 - 23920804
Alignment:
Q  508 atctatagataata--ataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaaga 572  Q
    ||||||||||||||  ||||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  23920870 atctatagataatataataaagcaaacttagtattttggcaagtttgccatttgtcatcttttaaga 23920804  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 508 - 542
Target Start/End: Original strand, 4798689 - 4798723
Alignment:
Q  508 atctatagataataataaagcaagcttagtatttt 542  Q
    ||||||||||||||||||| |||||||||||||||    
T  4798689 atctatagataataataaaacaagcttagtatttt 4798723  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 13842998 - 13843052
Alignment:
Q  508 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtca 562  Q
    |||||||||||||||||||||||  ||||| ||||||||| | || |||||||||    
T  13842998 atctatagataataataaagcaatgttagttttttggcaagtatgacatttgtca 13843052  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 6632744 - 6632798
Alignment:
Q  508 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtca 562  Q
    |||||||||||||||||||||||||| ||||||||| |||   ||||||||||||    
T  6632744 atctatagataataataaagcaagctcagtattttgacaagcctgtcatttgtca 6632798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 561
Target Start/End: Complemental strand, 32868889 - 32868836
Alignment:
Q  508 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtc 561  Q
    ||||||||||||||||||||||||||||||||| | |||| | || ||||||||    
T  32868889 atctatagataataataaagcaagcttagtattatagcaagtatgacatttgtc 32868836  T

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