View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4641-Insertion-2 (Length: 855)

Name: NF4641-Insertion-2
Description: NF4641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4641-Insertion-2
NF4641-Insertion-2
[»] chr1 (42 HSPs)
chr1 (7-617)||(11881349-11881958)
chr1 (10-474)||(11890718-11891182)
chr1 (113-606)||(11904048-11904540)
chr1 (113-617)||(11904312-11904815)
chr1 (113-606)||(11904180-11904672)
chr1 (172-606)||(11903975-11904408)
chr1 (245-617)||(11890821-11891192)
chr1 (113-488)||(11904444-11904819)
chr1 (298-606)||(11903969-11904276)
chr1 (7-146)||(11903849-11903988)
chr1 (707-836)||(11882057-11882181)
chr1 (707-836)||(11891291-11891415)
chr1 (113-224)||(11891085-11891196)
chr1 (113-224)||(11881851-11881962)
chr1 (19-185)||(52819772-52819938)
chr1 (707-836)||(11904854-11904978)
chr1 (271-362)||(52819163-52819254)
chr1 (744-836)||(52818962-52819049)
chr1 (535-617)||(52819173-52819254)
chr1 (139-230)||(52819163-52819254)
chr1 (256-317)||(52819604-52819665)
chr1 (509-581)||(52819772-52819844)
chr1 (259-314)||(52819283-52819338)
chr1 (256-318)||(52819399-52819461)
chr1 (124-185)||(52819604-52819665)
chr1 (245-317)||(52819772-52819844)
chr1 (403-494)||(52819163-52819254)
chr1 (127-182)||(52819283-52819338)
chr1 (746-788)||(11904797-11904839)
chr1 (391-449)||(52819280-52819338)
chr1 (124-185)||(52819400-52819461)
chr1 (520-581)||(52819604-52819665)
chr1 (385-446)||(52819607-52819668)
chr1 (704-836)||(11882246-11882373)
chr1 (704-836)||(11891480-11891607)
chr1 (749-836)||(11905088-11905170)
chr1 (523-578)||(52819283-52819338)
chr1 (787-833)||(11905025-11905071)
chr1 (520-582)||(52819399-52819461)
chr1 (119-156)||(11882673-11882710)
chr1 (256-317)||(52819484-52819545)
chr1 (377-446)||(52819775-52819844)
[»] chr6 (4 HSPs)
chr6 (277-317)||(12179191-12179231)
chr6 (275-320)||(12163363-12163408)
chr6 (284-317)||(12179165-12179198)
chr6 (284-317)||(12192384-12192417)


Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 7 - 617
Target Start/End: Original strand, 11881349 - 11881958
Alignment:
Q  7 aagttgtccttgaaatccaaagacaagtacgaggtagtgctcaaagctaagccatttgcttatgcttcaaagaaacatttcaaagaatgtgagaagccca 106  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11881349 aagttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttcaaagaatgtgagaagccta 11881448  T
Q  107 agacttcaccaactccttactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacccgtccattattactcacctcc 206  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || || |||||||||||||| ||||||||||| ||||||||    
T  11881449 agccttcaccaactccttactactacaaatcacctccacctccctcaccagtttacaaatacaactcaccacctccaccggtccattattattcacctcc 11881548  T
Q  207 atattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactcc 306  Q
    |||   ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||     
T  11881549 atacacctacaagtcacctcctccccctgtgaaagcggcaccaactccttactactacaaatcacctccaccacccgcaccggtttacaagtacaactca 11881648  T
Q  307 ccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactccatactactacaaatcacctc 406  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  11881649 ccccctccaccggtccattattattcaccaccatatacctataagtcacctcctccccctgtgaaagcggcaccaactccttactactacaaatcacctc 11881748  T
Q  407 cacctcctgcaccagtttacaagtacaactccccacctccgccggtccattactattcacctccatacacctataggtcacctcctcctcctgtgaaagc 506  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| | |||||||||||| ||||||||||     
T  11881749 cacctcccgcaccggtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctacaagtcacctcctccccctgtgaaagt 11881848  T
Q  507 agcaccaactccttactactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccaccggtcccattattattctccaccata 606  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11881849 ggcaccaactccttactactacaaatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggt-ccattattattctccaccata 11881947  T
Q  607 ctactacaagt 617  Q
    |||||||||||    
T  11881948 ctactacaagt 11881958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 474
Target Start/End: Original strand, 11890718 - 11891182
Alignment:
Q  10 ttgtccttgaaatccaaagacaagtacgaggtagtgctcaaagctaagccatttgcttatgcttcaaagaaacatttcaaagaatgtgagaagcccaaga 109  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  11890718 ttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttcaaagaatgtgagaagtccaagc 11890817  T
Q  110 cttcaccaactccttactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacccgtccattattactcacctccata 209  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11890818 cttcaccaactccttactactacaaatcacctccacctccctcaccagtttacaagtataactcaccacctccacccgtccattattactcacctccata 11890917  T
Q  210 ttactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactcccca 309  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  11890918 ttactacaagtcacctcctccccccgtgaaagcggcaccaactccttactactacaaatcacctccacctcccgcaccagtttacaagtacaactcccca 11891017  T
Q  310 cctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactccatactactacaaatcacctccac 409  Q
    ||||| || |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||||||||||||    
T  11891018 cctccgccagtccattactattcacctccatacacctataagtcacctcctcctcctgtgaaagcagcaccaactccttactactacaaatcacctccac 11891117  T
Q  410 ctcctgcaccagtttacaagtacaactccccacctccgccggtccattactattcacctccatac 474  Q
    |||| ||||| ||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||    
T  11891118 ctcccgcaccggtttacaagtacaactcaccacctccaccggtccattattattctccaccatac 11891182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 113 - 606
Target Start/End: Original strand, 11904048 - 11904540
Alignment:
Q  113 caccaactccttactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacccgtccattattactcacctccatatta 212  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || || ||||||||||| ||||||||||| ||||| ||||||      
T  11904048 caccaactccttactactacaaatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccagtccattattattcaccaccatatac 11904147  T
Q  213 ctacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacct 312  Q
    |||||||||||||||||| || |||||| | |||||||||||||||||||| ||||||||||| || || ||||| ||||||||||||||||||||||||    
T  11904148 ctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacct 11904247  T
Q  313 ccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactccatactactacaaatcacctccacctc 412  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||  |||||||||||| |||||||| |||||||||||||| |    
T  11904248 ccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccac 11904347  T
Q  413 ctgcaccagtttacaagtacaactccccacctccgccggtccattactattcacctccatacacctataggtcacctcctcctcctgtgaaagcagcacc 512  Q
    | ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| | |||||||||||| ||||||||| | |||||    
T  11904348 ccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcacc 11904447  T
Q  513 aactccttactactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccaccggtcccattattattctccaccata 606  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||    
T  11904448 aactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggt-ccattattattcaccaccata 11904540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 113 - 617
Target Start/End: Original strand, 11904312 - 11904815
Alignment:
Q  113 caccaactccttactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacccgtccattattactcacctccatatta 212  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || || ||||||||||| ||||||||||| ||||| ||||||      
T  11904312 caccaactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatac 11904411  T
Q  213 ctacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacct 312  Q
    |||||||||||||||||| || |||||| | |||||||||||||||||||| ||||||||||| || || ||||| ||||||||||||||||||||||||    
T  11904412 ctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacct 11904511  T
Q  313 ccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactccatactactacaaatcacctccacctc 412  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||  |||||||||||| |||||||| |||||||||||||| |    
T  11904512 ccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccac 11904611  T
Q  413 ctgcaccagtttacaagtacaactccccacctccgccggtccattactattcacctccatacacctataggtcacctcctcctcctgtgaaagcagcacc 512  Q
    | ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| | |||||||||||| |||||||||| ||||||    
T  11904612 ccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccccctgtgaaagtagcacc 11904711  T
Q  513 aactccttactactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccaccggtcccattattattctccaccatactacta 612  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||||||| |||||||||||    
T  11904712 aactccatactactacaaatcacctccacctcctgcaccggtttataagtacaactcacctcctccaccagt-ccattattattctcctccatactacta 11904810  T
Q  613 caagt 617  Q
     ||||    
T  11904811 taagt 11904815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 113 - 606
Target Start/End: Original strand, 11904180 - 11904672
Alignment:
Q  113 caccaactccttactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacccgtccattattactcacctccatatta 212  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || || ||||||||||| ||||||||||| ||||| ||||||      
T  11904180 caccaactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatac 11904279  T
Q  213 ctacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacct 312  Q
    |||||||||||||||||| || |||||| | |||||||||||||||||||| ||||||||||| || || ||||| ||||||||||||||||||||||||    
T  11904280 ctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacct 11904379  T
Q  313 ccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactccatactactacaaatcacctccacctc 412  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||  |||||||||||| |||||||| |||||||||||||| |    
T  11904380 ccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccac 11904479  T
Q  413 ctgcaccagtttacaagtacaactccccacctccgccggtccattactattcacctccatacacctataggtcacctcctcctcctgtgaaagcagcacc 512  Q
    | ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| | |||||||||||| ||||||||| | |||||    
T  11904480 ccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcacc 11904579  T
Q  513 aactccttactactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccaccggtcccattattattctccaccata 606  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||    
T  11904580 aactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggt-ccattattattcaccaccata 11904672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 172 - 606
Target Start/End: Original strand, 11903975 - 11904408
Alignment:
Q  172 tcaccacctccacccgtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcac 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||    
T  11903975 tcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctccccctgtgaaagcggcaccaactccttactactacaaatcac 11904074  T
Q  272 ctcctcctccagcaccagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaa 371  Q
    |||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  11904075 ctccaccacccgcaccggtttacaagtacaactccccacctccaccagtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaa 11904174  T
Q  372 agtggcaccaactccatactactacaaatcacctccacctcctgcaccagtttacaagtacaactccccacctccgccggtccattactattcacctcca 471  Q
    |  |||||||||||| |||||||| |||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||    
T  11904175 aacggcaccaactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccacca 11904274  T
Q  472 tacacctataggtcacctcctcctcctgtgaaagcagcaccaactccttactactacaaatcacctccacctcccgcaccggtttacaagtacaactcac 571  Q
    || ||||| | |||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |    
T  11904275 tatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccc 11904374  T
Q  572 cacctccaccggtcccattattattctccaccata 606  Q
    ||||||||||||| |||||||||||| ||||||||    
T  11904375 cacctccaccggt-ccattattattcaccaccata 11904408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 245 - 617
Target Start/End: Original strand, 11890821 - 11891192
Alignment:
Q  245 caccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccaccggtccattattattcacctccatatac 344  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||      
T  11890821 caccaactccttactactacaaatcacctccacctccctcaccagtttacaagtataactcaccacctccacccgtccattattactcacctccatatta 11890920  T
Q  345 ctataagtcacctcctccccctgtgaaagtggcaccaactccatactactacaaatcacctccacctcctgcaccagtttacaagtacaactccccacct 444  Q
    ||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11890921 ctacaagtcacctcctccccccgtgaaagcggcaccaactccttactactacaaatcacctccacctcccgcaccagtttacaagtacaactccccacct 11891020  T
Q  445 ccgccggtccattactattcacctccatacacctataggtcacctcctcctcctgtgaaagcagcaccaactccttactactacaaatcacctccacctc 544  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11891021 ccgccagtccattactattcacctccatacacctataagtcacctcctcctcctgtgaaagcagcaccaactccttactactacaaatcacctccacctc 11891120  T
Q  545 ccgcaccggtttacaagtacaactcaccacctccaccggtcccattattattctccaccatactactacaagt 617  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11891121 ccgcaccggtttacaagtacaactcaccacctccaccggt-ccattattattctccaccatactactacaagt 11891192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 113 - 488
Target Start/End: Original strand, 11904444 - 11904819
Alignment:
Q  113 caccaactccttactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacccgtccattattactcacctccatatta 212  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || || ||||||||||| ||||||||||| ||||| ||||||      
T  11904444 caccaactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatac 11904543  T
Q  213 ctacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacct 312  Q
    |||||||||||||||||| || |||||| | |||||||||||||||||||| ||||||||||| || || ||||| ||||||||||||||||||||||||    
T  11904544 ctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacct 11904643  T
Q  313 ccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactccatactactacaaatcacctccacctc 412  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11904644 ccaccggtccattattattcaccaccatatacctacaagtcacctcctccccctgtgaaagtagcaccaactccatactactacaaatcacctccacctc 11904743  T
Q  413 ctgcaccagtttacaagtacaactccccacctccgccggtccattactattcacctccatacacctataggtcacc 488  Q
    ||||||| ||||| ||||||||||| || ||||| || |||||||| ||||| |||||||||  ||||| ||||||    
T  11904744 ctgcaccggtttataagtacaactcacctcctccaccagtccattattattctcctccatactactataagtcacc 11904819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 298 - 606
Target Start/End: Original strand, 11903969 - 11904276
Alignment:
Q  298 tacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactccatactactaca 397  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||  ||| |||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  11903969 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctccccctgtgaaagcggcaccaactccttactactaca 11904068  T
Q  398 aatcacctccacctcctgcaccagtttacaagtacaactccccacctccgccggtccattactattcacctccatacacctataggtcacctcctcctcc 497  Q
    ||||||||||||| || ||||| |||||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||| | |||||||||||| ||    
T  11904069 aatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccagtccattattattcaccaccatatacctacaagtcacctcctccacc 11904168  T
Q  498 tgtgaaagcagcaccaactccttactactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccaccggtcccattattattc 597  Q
    ||||||| | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  11904169 tgtgaaaacggcaccaactccttactactataaatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccggt-ccattattattc 11904267  T
Q  598 tccaccata 606  Q
     ||||||||    
T  11904268 accaccata 11904276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 11903849 - 11903988
Alignment:
Q  7 aagttgtccttgaaatccaaagacaagtacgaggtagtgctcaaagctaagccatttgcttatgcttcaaagaaacatttcaaagaatgtgagaagccca 106  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11903849 aagttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttcaaagaatgtgagaagccta 11903948  T
Q  107 agacttcaccaactccttactactacaaatcacctccacc 146  Q
    || ||||||||||||||| |||| ||  | ||||||||||    
T  11903949 agccttcaccaactcctttctacaactcaccacctccacc 11903988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 707 - 836
Target Start/End: Original strand, 11882057 - 11882181
Alignment:
Q  707 tattacaaatctcctcctccaccaaaacaaacttcccaccctccatactactataagtcaccaaccccatcatcaccatcccatcacctcctcccccata 806  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |||||     |||||||||||||| |||||    
T  11882057 tattacaaatctcctcctccaccaaaacaaatttcacaccctccatactactataagtcaccacccccaccatca-----ccatcacctcctccaccata 11882151  T
Q  807 caattataagtctccacctccaccatcacc 836  Q
    | ||||||||||||||||||||||||||||    
T  11882152 ctattataagtctccacctccaccatcacc 11882181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 707 - 836
Target Start/End: Original strand, 11891291 - 11891415
Alignment:
Q  707 tattacaaatctcctcctccaccaaaacaaacttcccaccctccatactactataagtcaccaaccccatcatcaccatcccatcacctcctcccccata 806  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |||||     |||||||||||||| |||||    
T  11891291 tattacaaatctcctcctccaccaaaacaaatttcacaccctccatactactataagtcaccacccccaccatca-----ccatcacctcctccaccata 11891385  T
Q  807 caattataagtctccacctccaccatcacc 836  Q
    | ||||||||||||||||||||||||||||    
T  11891386 ctattataagtctccacctccaccatcacc 11891415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 11891085 - 11891196
Alignment:
Q  113 caccaactccttactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacccgtccattattactcacctccatatta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| || || ||||| ||    
T  11891085 caccaactccttactactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccaccggtccattattattctccaccatacta 11891184  T
Q  213 ctacaagtcacc 224  Q
    ||||||||||||    
T  11891185 ctacaagtcacc 11891196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 11881851 - 11881962
Alignment:
Q  113 caccaactccttactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacccgtccattattactcacctccatatta 212  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||| ||||||||||| || || ||||| ||    
T  11881851 caccaactccttactactacaaatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattctccaccatacta 11881950  T
Q  213 ctacaagtcacc 224  Q
    ||||||||||||    
T  11881951 ctacaagtcacc 11881962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 52819938 - 52819772
Alignment:
Q  19 aaatccaaagacaagtacgaggtagtgctcaaagctaagccatttgcttatgcttcaaagaaacatttcaaagaatgtgagaagcccaagacttcaccaa 118  Q
    ||||| ||||||||||| || || |||||||| ||||||||||| || |||||||| ||||| ||||   |||||||||| || || ||| |||||||||    
T  52819938 aaatctaaagacaagtatgaagttgtgctcaaggctaagccattcgcatatgcttctaagaagcattatgaagaatgtgaaaaacctaagccttcaccaa 52819839  T
Q  119 ctccttactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacc 185  Q
    |||||||||||||||| |||||||| |||||  |||| ||||| |  || || ||||||||||||||    
T  52819838 ctccttactactacaagtcacctcctcctccttcaccggtttatatatacaagtcaccacctccacc 52819772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 707 - 836
Target Start/End: Original strand, 11904854 - 11904978
Alignment:
Q  707 tattacaaatctcctcctccaccaaaacaaacttcccaccctccatactactataagtcaccaaccccatcatcaccatcccatcacctcctcccccata 806  Q
    ||||||||||||||||||||||| ||| | | ||| ||||||||||||||||||||||||||| ||||| ||||     ||||||||||||||| |||||    
T  11904854 tattacaaatctcctcctccaccgaaagagatttcacaccctccatactactataagtcaccacccccaccatc-----cccatcacctcctccaccata 11904948  T
Q  807 caattataagtctccacctccaccatcacc 836  Q
    | |||| ||||| || ||||||||||||||    
T  11904949 ctattacaagtccccccctccaccatcacc 11904978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 52819254 - 52819163
Alignment:
Q  271 cctcctcctccagcaccagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctcc 362  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||| || |||||   |||||||||||| |||||    
T  52819254 cctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctcc 52819163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 744 - 836
Target Start/End: Complemental strand, 52819049 - 52818962
Alignment:
Q  744 accctccatactactataagtcaccaaccccatcatcaccatcccatcacctcctcccccatacaattataagtctccacctccaccatcacc 836  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||     ||||||| |||||| |||||||||| |||||||||||||||||    
T  52819049 accctccatactactataagtcaccaccaccaccatcaccatccc-----ctcctccaccatactattataagtcaccacctccaccatcacc 52818962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 535 - 617
Target Start/End: Complemental strand, 52819254 - 52819173
Alignment:
Q  535 cctccacctcccgcaccggtttacaagtacaactcaccacctccaccggtcccattattattctccaccatactactacaagt 617  Q
    ||||| |||||  |||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  52819254 cctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtcc-attattattctccaccatactactataagt 52819173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 52819254 - 52819163
Alignment:
Q  139 cctccacctcccgcaccagtttacaagtataattcaccacctccacccgtccattattactcacctccatattactacaagtcacctcctcc 230  Q
    ||||| |||||  |||||||||||||||| || |||||||||||||| ||||||||||| || || ||||| ||||| |||||||| |||||    
T  52819254 cctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctcc 52819163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 52819665 - 52819604
Alignment:
Q  256 tactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccacc 317  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||| || |||||||||||    
T  52819665 tactactacaagtcacctcctcctccaacaccaatttacaagtacaattcaccacctccacc 52819604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 509 - 581
Target Start/End: Complemental strand, 52819844 - 52819772
Alignment:
Q  509 caccaactccttactactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccacc 581  Q
    |||||||||||||||||||||| |||||||| |||||  |||||||||| |  ||||| ||||||||||||||    
T  52819844 caccaactccttactactacaagtcacctcctcctccttcaccggtttatatatacaagtcaccacctccacc 52819772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 52819338 - 52819283
Alignment:
Q  259 tactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctcc 314  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||    
T  52819338 tactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctcc 52819283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 52819461 - 52819399
Alignment:
Q  256 tactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccaccg 318  Q
    ||||||||||| ||||| ||||||||| ||||||||||||| ||||| || ||||||||||||    
T  52819461 tactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacctccaccg 52819399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 52819665 - 52819604
Alignment:
Q  124 tactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacc 185  Q
    ||||||||||| |||||||| |||||  ||||| |||||||||| |||||||||||||||||    
T  52819665 tactactacaagtcacctcctcctccaacaccaatttacaagtacaattcaccacctccacc 52819604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 52819844 - 52819772
Alignment:
Q  245 caccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccacc 317  Q
    |||||||||||||||||||||| ||||||||||||||  |||| ||||| |  ||||| || |||||||||||    
T  52819844 caccaactccttactactacaagtcacctcctcctccttcaccggtttatatatacaagtcaccacctccacc 52819772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 403 - 494
Target Start/End: Complemental strand, 52819254 - 52819163
Alignment:
Q  403 cctccacctcctgcaccagtttacaagtacaactccccacctccgccggtccattactattcacctccatacacctataggtcacctcctcc 494  Q
    ||||| |||||  ||||||||||||||||||| || |||||||| || |||||||| ||||| || ||||||  ||||| |||||| |||||    
T  52819254 cctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctcc 52819163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 52819338 - 52819283
Alignment:
Q  127 tactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctcc 182  Q
    |||||||| |||||||| |||||  |||||||||||||||| ||||||||||||||    
T  52819338 tactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctcc 52819283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 746 - 788
Target Start/End: Original strand, 11904797 - 11904839
Alignment:
Q  746 cctccatactactataagtcaccaaccccatcatcaccatccc 788  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  11904797 cctccatactactataagtcaccacccccaccatcaccatccc 11904839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 449
Target Start/End: Complemental strand, 52819338 - 52819280
Alignment:
Q  391 tactacaaatcacctccacctcctgcaccagtttacaagtacaactccccacctccgcc 449  Q
    |||||||| |||||||| |||||  ||||||||||||||||||| || |||||||||||    
T  52819338 tactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctccgcc 52819280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 52819461 - 52819400
Alignment:
Q  124 tactactacaaatcacctccacctcccgcaccagtttacaagtataattcaccacctccacc 185  Q
    ||||||||||| ||||| || |||||  ||||||||||||| || |||||||||||||||||    
T  52819461 tactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacctccacc 52819400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 581
Target Start/End: Complemental strand, 52819665 - 52819604
Alignment:
Q  520 tactactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccacc 581  Q
    ||||||||||| |||||||| |||||  ||||  ||||||||||||| ||||||||||||||    
T  52819665 tactactacaagtcacctcctcctccaacaccaatttacaagtacaattcaccacctccacc 52819604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 52819668 - 52819607
Alignment:
Q  385 ccatactactacaaatcacctccacctcctgcaccagtttacaagtacaactccccacctcc 446  Q
    |||||||||||||| |||||||| |||||  ||||| ||||||||||||| || ||||||||    
T  52819668 ccatactactacaagtcacctcctcctccaacaccaatttacaagtacaattcaccacctcc 52819607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 836
Target Start/End: Original strand, 11882246 - 11882373
Alignment:
Q  704 tactattacaaatctcctcctccaccaaaacaaacttcccaccctccatactactataagtcaccaaccccatcatcaccatcccatcacctcctccccc 803  Q
    ||||| ||||| ||||| |||||||| ||| |||  || || ||||||||  |||||||||||||| ||||| ||||||||||||     |||| || ||    
T  11882246 tactactacaagtctccacctccacctaaagaaatatcacatcctccatataactataagtcaccacccccaccatcaccatccc-----ctccccctcc 11882340  T
Q  804 atacaattataagtctccacctccaccatcacc 836  Q
    |||| |||| || ||||| || |||||||||||    
T  11882341 atactattacaaatctcctccaccaccatcacc 11882373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 836
Target Start/End: Original strand, 11891480 - 11891607
Alignment:
Q  704 tactattacaaatctcctcctccaccaaaacaaacttcccaccctccatactactataagtcaccaaccccatcatcaccatcccatcacctcctccccc 803  Q
    ||||| ||||| ||||| |||||||| ||| |||  || || ||||||||  |||||||||||||| ||||| ||||||||||||     |||| || ||    
T  11891480 tactactacaagtctccacctccacctaaagaaatatcacatcctccatataactataagtcaccacccccaccatcaccatccc-----ctccccctcc 11891574  T
Q  804 atacaattataagtctccacctccaccatcacc 836  Q
    |||| |||| || ||||| || |||||||||||    
T  11891575 atactattacaaatctcctccaccaccatcacc 11891607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 836
Target Start/End: Original strand, 11905088 - 11905170
Alignment:
Q  749 ccatactactataagtcaccaaccccatcatcaccatcccatcacctcctcccccatacaattataagtctccacctccaccatcacc 836  Q
    ||||| ||||||||||||||| | ||| ||||     |||||| |||||||| |||||| |||||||||| ||||||||||| |||||    
T  11905088 ccatattactataagtcaccagctccaccatc-----cccatcccctcctccaccatactattataagtccccacctccaccgtcacc 11905170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 578
Target Start/End: Complemental strand, 52819338 - 52819283
Alignment:
Q  523 tactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctcc 578  Q
    |||||||| |||||||| |||||  |||| |||||||||||||| |||||||||||    
T  52819338 tactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctcc 52819283  T

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Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 787 - 833
Target Start/End: Original strand, 11905025 - 11905071
Alignment:
Q  787 ccatcacctcctcccccatacaattataagtctccacctccaccatc 833  Q
    ||||| |||||||| |||||| |||||||||| ||||||||||||||    
T  11905025 ccatctcctcctccaccatactattataagtcaccacctccaccatc 11905071  T

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Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 582
Target Start/End: Complemental strand, 52819461 - 52819399
Alignment:
Q  520 tactactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccaccg 582  Q
    ||||||||||| ||||| || |||||  |||| |||||||| ||||| |||||||||||||||    
T  52819461 tactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacctccaccg 52819399  T

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Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 11882673 - 11882710
Alignment:
Q  119 ctccttactactacaaatcacctccacctcccgcacca 156  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  11882673 ctccttactattacaaatcacctccacctccctcacca 11882710  T

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Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 52819545 - 52819484
Alignment:
Q  256 tactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccacc 317  Q
    ||||| ||||| ||||||||||| ||| ||||||||||| | ||||| || |||||||||||    
T  52819545 tactattacaagtcacctcctccaccatcaccagtttactactacaagtctccacctccacc 52819484  T

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Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 446
Target Start/End: Complemental strand, 52819844 - 52819775
Alignment:
Q  377 caccaactccatactactacaaatcacctccacctcctgcaccagtttacaagtacaactccccacctcc 446  Q
    |||||||||| ||||||||||| |||||||| |||||| |||| ||||| |  ||||| || ||||||||    
T  52819844 caccaactccttactactacaagtcacctcctcctccttcaccggtttatatatacaagtcaccacctcc 52819775  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 12179191 - 12179231
Alignment:
Q  277 cctccagcaccagtttacaagtacaactccccacctccacc 317  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  12179191 cctccaccaccagtttacaagtacaagtccccacctccacc 12179231  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 12163363 - 12163408
Alignment:
Q  275 ctcctccagcaccagtttacaagtacaactccccacctccaccggt 320  Q
    |||||||| ||||||||||||||||||| || || |||||||||||    
T  12163363 ctcctccaccaccagtttacaagtacaaatcacctcctccaccggt 12163408  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 12179165 - 12179198
Alignment:
Q  284 caccagtttacaagtacaactccccacctccacc 317  Q
    ||||||||||||||||||| ||||||||||||||    
T  12179165 caccagtttacaagtacaagtccccacctccacc 12179198  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 12192384 - 12192417
Alignment:
Q  284 caccagtttacaagtacaactccccacctccacc 317  Q
    ||||||||||||||||||| ||||||||||||||    
T  12192384 caccagtttacaagtacaagtccccacctccacc 12192417  T

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