View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4641-Insertion-3 (Length: 332)

Name: NF4641-Insertion-3
Description: NF4641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4641-Insertion-3
NF4641-Insertion-3
[»] chr1 (2 HSPs)
chr1 (47-332)||(35242964-35243249)
chr1 (33-330)||(35231326-35231623)
[»] chr6 (10 HSPs)
chr6 (93-228)||(6523441-6523576)
chr6 (93-221)||(6526420-6526548)
chr6 (105-228)||(6465393-6465516)
chr6 (93-227)||(6528241-6528381)
chr6 (166-221)||(1841891-1841946)
chr6 (130-221)||(6461823-6461914)
chr6 (130-221)||(6496758-6496849)
chr6 (93-221)||(6505528-6505656)
chr6 (93-221)||(13035744-13035872)
chr6 (231-272)||(13035684-13035725)
[»] chr7 (1 HSPs)
chr7 (93-221)||(9665301-9665435)
[»] chr4 (1 HSPs)
chr4 (93-221)||(13536325-13536459)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 47 - 332
Target Start/End: Complemental strand, 35243249 - 35242964
Alignment:
Q  47 caaaatcataactagagtcagaacatccttcatttgtaaccactcttccccattcttgatcatatacaaattcattttctttgaaagttccatcaagcca 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35243249 caaaatcataactagagtcagaacatccttcatttgtaaccactcttccccattcttgatcatatacaaattcattttctttgaaagttccatcaagcca 35243150  T
Q  147 aagctcaatgacctctttcaaatacttcttaacttttggaatcacatcaaggaaacaaacctcttcagctatcaaagccaactatgctatcaattttcca 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35243149 aagctcaatgacctctttcaaatacttcttaacttttggaatcacatcaaagaaacaaacctcttcagctatcaaagccaactatgcaatcaattttcca 35243050  T
Q  247 taaaaataagatgaagtccttgttattgcagatgcctttagtccctcaaaattgttcaaaggaaccgaaactatttcataatgtgc 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35243049 taaaaataagatgaagtccttgttattgcagatgcctttagtccctcaaaatcgttcaaaggaaccgaaactatttcataatgtgc 35242964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 33 - 330
Target Start/End: Complemental strand, 35231623 - 35231326
Alignment:
Q  33 ataagattcagatccaaaatcataactagagtcagaacatccttcatttgtaaccactcttccccattcttgatcatatacaaattcattttctttgaaa 132  Q
    |||| ||||||||||||||||||||||||| |||||||||||||  |||||||| |||  || |||||| |||||||||| |||| |||||||||||| |    
T  35231623 ataaaattcagatccaaaatcataactagaatcagaacatccttgttttgtaacaactactctccattcctgatcatatagaaatccattttctttgata 35231524  T
Q  133 gttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcacatcaaggaaacaaacctcttcagctatcaaagccaactatg 232  Q
    | ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  35231523 gctccatcaagccaaggctcaatgatctctttcaaatacttcttaacttttggaatcacatcaaggaaacaaacctcttcagctatcaaagccaaccttg 35231424  T
Q  233 ctatcaattttccataaaaataagatgaagtccttgttattgcagatgcctttagtccctcaaaattgttcaaaggaaccgaaactatttcataatgt 330  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||| ||  ||||||||||||||||| ||||||||||||    
T  35231423 caatcaattttccataaaaataagatgaagtccttgttatcgcagatgaatttagtccctcaacatcattcaaaggaaccgaaacaatttcataatgt 35231326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 6523441 - 6523576
Alignment:
Q  93 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcaca 192  Q
    ||||||||  |||||||||| |||| |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||||    
T  6523441 tccccatttctgatcatatagaaatccattttatttgaaagttccatcaagccaaggctcaatgatctctttcaaatactttttaacttttgaaatcaca 6523540  T
Q  193 tcaaggaaacaaacctcttcagctatcaaagccaac 228  Q
    ||||||||||||||||||||||||||  ||||||||    
T  6523541 tcaaggaaacaaacctcttcagctattgaagccaac 6523576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 6526420 - 6526548
Alignment:
Q  93 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcaca 192  Q
    |||||||| || |||||| | |||| ||||| | || |||||||||||||||||| ||||||||   || |||||||||||  |||||||||||||||||    
T  6526420 tccccattttttatcataaagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaatactttctaacttttggaatcaca 6526519  T
Q  193 tcaaggaaacaaacctcttcagctatcaa 221  Q
    |||||||||||||||||||| ||||||||    
T  6526520 tcaaggaaacaaacctcttccgctatcaa 6526548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 6465393 - 6465516
Alignment:
Q  105 atcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcacatcaaggaaacaa 204  Q
    |||||| | |||| ||||| | || |||||||||||||||||| |||||||    || |||||| ||||| ||| ||| |||||||||||||||||||||    
T  6465393 atcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatagtttccttcaaaaacttcctaattttcggaatcacatcaaggaaacaa 6465492  T
Q  205 acctcttcagctatcaaagccaac 228  Q
    ||||||||||| ||||||||||||    
T  6465493 acctcttcagcaatcaaagccaac 6465516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 6528241 - 6528381
Alignment:
Q  93 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatgacctctttcaaatactt------cttaacttttgga 186  Q
    |||||||| || |||||| | |||| ||||  ||||||||||||||||||||||| ||||||| | ||| |||||||||||      |||||| ||||||    
T  6528241 tccccattttttatcatagagaaatccattacctttgaaagttccatcaagccaaggctcaatcatctccttcaaatacttcttaaccttaacctttgga 6528340  T
Q  187 atcacatcaaggaaacaaacctcttcagctatcaaagccaa 227  Q
    |||||||||  |||| ||| |||||||||||||||||||||    
T  6528341 atcacatcatagaaaaaaatctcttcagctatcaaagccaa 6528381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 1841946 - 1841891
Alignment:
Q  166 aaatacttcttaacttttggaatcacatcaaggaaacaaacctcttcagctatcaa 221  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  1841946 aaatactttctaacttttggaatcacatcaaggaaacaaacctcttcagctatcaa 1841891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 6461914 - 6461823
Alignment:
Q  130 aaagttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcacatcaaggaaacaaacctcttcagctatcaa 221  Q
    ||||||||||| | |||| ||||||||   ||||| ||| |||||||||| |||||||||||||| | | || |||||||||||||||||||    
T  6461914 aaagttccatctaaccaaggctcaatggtttcttttaaaaacttcttaacctttggaatcacatctaagtaagaaacctcttcagctatcaa 6461823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 6496758 - 6496849
Alignment:
Q  130 aaagttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcacatcaaggaaacaaacctcttcagctatcaa 221  Q
    ||||||||||| | |||| ||||||||   ||||||||| |||||||||| |||||||||||||| | | |  |||||||||| ||||||||    
T  6496758 aaagttccatctaaccaaggctcaatggtttctttcaaaaacttcttaacctttggaatcacatctaagtatgaaacctcttcggctatcaa 6496849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 6505528 - 6505656
Alignment:
Q  93 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcaca 192  Q
    |||||||| || |||||||| |||| ||||| | || |||||||||||||||||| ||||||||   || |||||| | ||  | ||||||  |||  ||    
T  6505528 tccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaagtttcttactttttcaatagca 6505627  T
Q  193 tcaaggaaacaaacctcttcagctatcaa 221  Q
    |||| |||  |||||||||||||||||||    
T  6505628 tcaaagaagaaaacctcttcagctatcaa 6505656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 13035872 - 13035744
Alignment:
Q  93 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcaca 192  Q
    |||||||| || |||||| | |||| ||||| | || |||||||||||||||||| ||||||||   || ||||| |||||||| ||  |||||||  ||    
T  13035872 tccccattttttatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaagtacttcttcacaattggaattgca 13035773  T
Q  193 tcaaggaaacaaacctcttcagctatcaa 221  Q
    |||||| ||   |||||||||| ||||||    
T  13035772 tcaaggtaattcacctcttcagttatcaa 13035744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 13035725 - 13035684
Alignment:
Q  231 tgctatcaattttccataaaaataagatgaagtccttgttat 272  Q
    ||||||||||||||||||||| |||||||| ||| |||||||    
T  13035725 tgctatcaattttccataaaagtaagatgatgtcgttgttat 13035684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 9665435 - 9665301
Alignment:
Q  93 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatgacctctttcaaatact------tcttaacttttgga 186  Q
    ||||||||  |||||||| | |||| |||||||||||||||||||||||| |||  | |||||    ||||||||| |||      ||||||| ||||||    
T  9665435 tccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaacttcttaatcttaacatttgga 9665336  T
Q  187 atcacatcaaggaaacaaacctcttcagctatcaa 221  Q
    | || ||||| |||| |||| ||||||||||||||    
T  9665335 accatatcaaagaaaaaaacgtcttcagctatcaa 9665301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 13536459 - 13536325
Alignment:
Q  93 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatgacctctttcaaatact------tcttaacttttgga 186  Q
    ||||||||  |||||||| | |||| |||||||||||||||||||||||| |||  | |||||    ||||||||| |||      ||||||| ||||||    
T  13536459 tccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaacttcttaatcttaacatttgga 13536360  T
Q  187 atcacatcaaggaaacaaacctcttcagctatcaa 221  Q
    | || ||||| |||| |||| ||||||||||||||    
T  13536359 accatatcaaagaaaaaaacgtcttcagctatcaa 13536325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University