View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4641-Insertion-4 (Length: 164)

Name: NF4641-Insertion-4
Description: NF4641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4641-Insertion-4
NF4641-Insertion-4
[»] chr1 (8 HSPs)
chr1 (120-160)||(11890961-11891001)
chr1 (120-160)||(11881463-11881503)
chr1 (120-160)||(11881727-11881767)
chr1 (120-160)||(11890829-11890869)
chr1 (120-160)||(11891093-11891133)
chr1 (120-160)||(11881595-11881635)
chr1 (120-160)||(11881859-11881899)
chr1 (120-160)||(11904056-11904096)


Alignment Details
Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 11890961 - 11891001
Alignment:
Q  120 ccttactactacaaatcacctccacctcccgtaccagttta 160  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  11890961 ccttactactacaaatcacctccacctcccgcaccagttta 11891001  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 11881463 - 11881503
Alignment:
Q  120 ccttactactacaaatcacctccacctcccgtaccagttta 160  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  11881463 ccttactactacaaatcacctccacctccctcaccagttta 11881503  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 11881727 - 11881767
Alignment:
Q  120 ccttactactacaaatcacctccacctcccgtaccagttta 160  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  11881727 ccttactactacaaatcacctccacctcccgcaccggttta 11881767  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 11890829 - 11890869
Alignment:
Q  120 ccttactactacaaatcacctccacctcccgtaccagttta 160  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  11890829 ccttactactacaaatcacctccacctccctcaccagttta 11890869  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 11891093 - 11891133
Alignment:
Q  120 ccttactactacaaatcacctccacctcccgtaccagttta 160  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  11891093 ccttactactacaaatcacctccacctcccgcaccggttta 11891133  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 11881595 - 11881635
Alignment:
Q  120 ccttactactacaaatcacctccacctcccgtaccagttta 160  Q
    |||||||||||||||||||||||||| |||| ||| |||||    
T  11881595 ccttactactacaaatcacctccaccacccgcaccggttta 11881635  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 11881859 - 11881899
Alignment:
Q  120 ccttactactacaaatcacctccacctcccgtaccagttta 160  Q
    |||||||||||||||||||||||||| |||| ||| |||||    
T  11881859 ccttactactacaaatcacctccaccacccgcaccggttta 11881899  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 11904056 - 11904096
Alignment:
Q  120 ccttactactacaaatcacctccacctcccgtaccagttta 160  Q
    |||||||||||||||||||||||||| |||| ||| |||||    
T  11904056 ccttactactacaaatcacctccaccacccgcaccggttta 11904096  T

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