View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4642-Insertion-1 (Length: 1079)
Name: NF4642-Insertion-1
Description: NF4642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4642-Insertion-1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 299 - 940
Target Start/End: Complemental strand, 28216551 - 28215888
Alignment:
| Q |
299 |
gatatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaagttagatactgcc |
397 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28216551 |
gatatggaaattgaggatttgaagaaaagtataaatacgctcaatgggcaatccgcagcaaa-ggatatggaaattgaggatttgaagttagatactgcc |
28216453 |
T |
|
| Q |
398 |
tttcgctataaagatggttttgataaggccatagaacaagttcatgtcctatttccatcgttcgatttgtcagaggctgatgctatgaagtccgtggttg |
497 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28216452 |
tttcgctatcaagatggttttgataaggccatagaacaagttcatgtcctatttccatcgttggatttgtcagaggctgacgctatgaagtccgtggttg |
28216353 |
T |
|
| Q |
498 |
atggaaaactagtattaagttttttccatttagtcccgaggctttttgatgttgtactactaacattttgatgtagggaagtgctaggaacactcttttt |
597 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
28216352 |
atggaaaactagta-taagttttttccatttagtctcgaggctttttgatgttgtactactaacattttgatgtagggaagtgctgtgaacacttttttt |
28216254 |
T |
|
| Q |
598 |
aatactctcttaaatactcacttttttatttggtaaaatcaatgttggtttttgacttttgaaataggtctcacataaagtggtgggactcatggattcc |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| || || |||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28216253 |
aatactctcttaaatactcacttttttatttggtgaaatcaatgttggtcttacac-tttggaataggtctcacatgaagtggtgggactcatggattcc |
28216155 |
T |
|
| Q |
698 |
actcaataaataagtgttagagaa--cgttgaaaagaga--attgct-------------------aacctatgctgacaaagttttgaatacctttaca |
774 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28216154 |
actcaataaataagtgttagagaaagcgttgaaaagagagtgttgctaacatatattttggaatgtaacctatgctgacaaagttttgaatacctttaca |
28216055 |
T |
|
| Q |
775 |
ttttgatgttatgcgttttattatgctgccttttcttttcaccgagaagagggtgacgtagagcatgtttgacttcaatctataatgaaagcacaaaatt |
874 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28216054 |
ttttgatgttatacgttttattatactgccttttcttttcaccgagaagagtgtgacgtagagcatgtttgacttcaaactataatgaaagcacaaaatt |
28215955 |
T |
|
| Q |
875 |
aagaaactccattgaggtcattgttggac-tggcta-ttgttacaatttgtttctgattaaccaactg |
940 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
28215954 |
aagaaactccattgaggtcattgttggacttggctatttgttac-atttgtttctgattaaccaactg |
28215888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 28216902 - 28216528
Alignment:
| Q |
20 |
cgctctgctttacttgggaaggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaat |
119 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28216902 |
cgctgtgctttacttcggaaggtgattacggaccaatttcaatctgtattgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaat |
28216803 |
T |
|
| Q |
120 |
taaaaatagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggacaa |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28216802 |
tgaaaatagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggagaa |
28216703 |
T |
|
| Q |
220 |
aaagaatgaaaataacaaggtgtttgaggaggaggttgctggcttgaagaaaagtgtagatatgctcaaggggcaatc---------cgatatggaaatt |
310 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
28216702 |
aaagactgaaaataacaaggcatttgaggaggaggttgttggcttgaagaaaagtgtagatgcgctcaaggggaaatcggccgcgaaggatatggaaatt |
28216603 |
T |
|
| Q |
311 |
gaggatttgaag-aaagtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaag |
385 |
Q |
| |
|
|||||||||||| |||| ||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28216602 |
gaggatttgaagaaaagaatagacacgctcaaggggcaatccgcagc-gaaggatatggaaattgaggatttgaag |
28216528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 28237774 - 28237400
Alignment:
| Q |
20 |
cgctctgctttacttgggaaggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
28237774 |
cgctctgctttacttgggaaggtgattatggaccaatttcaatctgtactaggacatgaaagcaactgccaagacgaactgaatgcaaccaaagaaaaat |
28237675 |
T |
|
| Q |
120 |
taaaaatagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggacaa |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
28237674 |
tgaaaatagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacaaactgctctgactcagttggagaa |
28237575 |
T |
|
| Q |
220 |
aaagaatgaaaataacaaggtgtttgaggaggaggttgctggcttgaagaaaagtgtagatatgctcaaggggcaatcc---------gatatggaaatt |
310 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||| |||||||| |
|
|
| T |
28237574 |
aaagactgaaaataacaaggcgtttgaggaggaggttgttggcttgaagaaaagtgtagatacgctcaaggggctatccgcttcgaaggatgtggaaatt |
28237475 |
T |
|
| Q |
311 |
gaggatttgaag-aaagtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaag |
385 |
Q |
| |
|
|||||||||||| |||||| | |||||||||| |||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
28237474 |
gaggatttgaagaaaagtacagatacgctcaagaggcaatccacaac-caaggatatggaaattgaggatttgaag |
28237400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 28232945 - 28232571
Alignment:
| Q |
20 |
cgctctgctttacttgggaaggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| || || |||||||| | |||||| ||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
28232945 |
cgctctgctttacttgggaaggtgattacggaccaattccaagctttagtgggacatcatagcaactgccaagacgaactgattgcaaccaaaggaaaat |
28232846 |
T |
|
| Q |
120 |
taaaaatagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggacaa |
219 |
Q |
| |
|
| |||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28232845 |
tgaaaatagccaatgatactcttggggatatgaagaagcacatattgaaggtaaataagagattggaggaagaacagactgctctgactcagttggagaa |
28232746 |
T |
|
| Q |
220 |
aaagaatgaaaataacaaggtgtttgaggaggaggttgctggcttgaagaaaagtgtagatatgctcaaggggcaatcc---------gatatggaaatt |
310 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||| ||| |||||||| |
|
|
| T |
28232745 |
aaagaatgaaaataacaaagcgtttgaggaggaggaggttggcttgaagaaaagtgtagatatgctaaaggggctatccattgcgaaggatgtggaaatt |
28232646 |
T |
|
| Q |
311 |
gaggatttgaag-aaagtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaag |
385 |
Q |
| |
|
|||||||||||| ||||| || ||| |||||| |||| |||||| || |||||| ||||||||||||| |||||| |
|
|
| T |
28232645 |
gaggatttgaagaaaagtgtagatatgctcaaggggctatccgctgc-gaaggatgtggaaattgaggacttgaag |
28232571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 262 - 716
Target Start/End: Complemental strand, 28232577 - 28232116
Alignment:
| Q |
262 |
cttgaagaaaagtgtagatatgctcaaggggcaatccg---------atatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatcc |
351 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||| |||| ||||| |||| ||||||||| |
|
|
| T |
28232577 |
cttgaaggaaagtgtagatatgctcaaggggaaatccgcagcgaaggatatagaaattgaggaattgaagaaaagtatggatacgttcaaggggcaatcc |
28232478 |
T |
|
| Q |
352 |
gcagcaaaaggatatggaaattgaggatttgaagttagatactgcctttcgctataaagatggttttgataaggccatagaacaagttcatgtcctattt |
451 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28232477 |
gcagcaaa-ggatatggaaattgaggatttgaaggtagacgctgccttgcgctatcaagatggttttgataaggccatagaacaagttcacatcctattt |
28232379 |
T |
|
| Q |
452 |
ccatcgttcgatttgtcagaggctgatgctatgaagtccgtggttgatggaaaactagtattaagttttttccatttagtcccgaggctttttgatgttg |
551 |
Q |
| |
|
||||| || ||||| || |||||||| ||||||||||| ||||||||||||||||||||| |||| |||| |||||||||| ||| |||||| ||||| | |
|
|
| T |
28232378 |
ccatcatttgatttttcggaggctgacgctatgaagtctgtggttgatggaaaactagta-taag-ttttaccatttagtctcgaagcttttggatgtag |
28232281 |
T |
|
| Q |
552 |
tactactaacattttgatgtagggaagtgctaggaacactctttttaat-actctcttaaatactcacttttttatttggtaaaatcaatgttggttttt |
650 |
Q |
| |
|
||||||||||||||||| |||| ||||||| || |||| ||||||| | || ||||| || ||||||| ||||||| || ||||||||||||| | |
|
|
| T |
28232280 |
tactactaacattttgacgtagagaagtgcaagaaacattcttttttttaacactctttaacactcactcttttattaggcgaaatcaatgttgg-ccta |
28232182 |
T |
|
| Q |
651 |
gacttttgaaataggtctcacataaagtggtgggactcatggattccactcaataaataagtgtta |
716 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||| |
|
|
| T |
28232181 |
cactttgaaaataggtctcacataaagtggtgagactcgtggattccaccgaataaacgagtgtta |
28232116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 299 - 522
Target Start/End: Complemental strand, 28237423 - 28237201
Alignment:
| Q |
299 |
gatatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatccgcagcaaaaggatatggaaattgaggatttgaagttagatactgcc |
397 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
28237423 |
gatatggaaattgaggatttgaagaaaagcatagatacgctcaaggggcaatccgcag-aaaaggatatggaaattgaggagttgaagatagacgctgca |
28237325 |
T |
|
| Q |
398 |
tttcgctataaagatggttttgataaggccatagaacaagttcatgtcctatttccatcgttcgatttgtcagaggctgatgctatgaagtccgtggttg |
497 |
Q |
| |
|
||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||| | ||| |||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
28237324 |
tttcgctatcaaggtggttttgacaaggccatagaacaagttcacatcctatttccgttgtttgatttgtcggaggctgacgctatgaagtctgtggttg |
28237225 |
T |
|
| Q |
498 |
atggaaaactagtattaagtttttt |
522 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
28237224 |
atggaaaactagta-taagtttttt |
28237201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 758 - 968
Target Start/End: Complemental strand, 28237046 - 28236838
Alignment:
| Q |
758 |
ttttgaatacctttacattttgatgttatgcgttttattatgctgccttttcttttcaccgagaagagggtgacgtagagcatgtttgacttcaatctat |
857 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||| || || |||||||||||||||| || ||||| | ||||| ||||| ||||| |||| |
|
|
| T |
28237046 |
ttttgaatacctttacatttcgatgttatgtgttttattat--tgtctattcttttcaccgagaaaagtgtgacattgagcacgtttgggttcaaactat |
28236949 |
T |
|
| Q |
858 |
aatgaaagcacaaaattaagaaactccattgaggtcattgttggac-tggcta-ttgttacaatttgtttctgattaaccaactggataagccatcacat |
955 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| || |||||| || ||| |||||||||||||||| ||| | ||||||||||||| | |
|
|
| T |
28236948 |
aatgaaggcacaaaattaagaaactctattgaggtcattgttgaacttggctatttactac-atttgtttctgattaatcaa-ttgataagccatcacgt |
28236851 |
T |
|
| Q |
956 |
atcttaataaata |
968 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
28236850 |
aacttaacaaata |
28236838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 833 - 890
Target Start/End: Complemental strand, 28231999 - 28231942
Alignment:
| Q |
833 |
tagagcatgtttgacttcaatctataatgaaagcacaaaattaagaaactccattgag |
890 |
Q |
| |
|
|||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28231999 |
tagagcatgtttcacatcaaactatagtgaaagcacaaaattaagaaactccattgag |
28231942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 385
Target Start/End: Complemental strand, 28232639 - 28232508
Alignment:
| Q |
263 |
ttgaagaaaagtgtagatatgctcaaggggcaatccg---------atatggaaattgaggatttgaag-aaagtataaatacgctcaatgggcaatccg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||| ||||| || ||| |||||| ||| |||||| |
|
|
| T |
28232639 |
ttgaagaaaagtgtagatatgctcaaggggctatccgctgcgaaggatgtggaaattgaggacttgaaggaaagtgtagatatgctcaaggggaaatccg |
28232540 |
T |
|
| Q |
353 |
cagcaaaaggatatggaaattgaggatttgaag |
385 |
Q |
| |
|
|||| || |||||| ||||||||||| |||||| |
|
|
| T |
28232539 |
cagcgaa-ggatatagaaattgaggaattgaag |
28232508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 658 - 720
Target Start/End: Complemental strand, 28237120 - 28237058
Alignment:
| Q |
658 |
gaaataggtctcacataaagtggtgggactcatggattccactcaataaataagtgttagaga |
720 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||| |
|
|
| T |
28237120 |
gaaacaggtctcacataaagtgttgggactcatagattccaccaaataaatgagtgttagaga |
28237058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 652 - 713
Target Start/End: Complemental strand, 18716853 - 18716790
Alignment:
| Q |
652 |
acttttgaaataggtctcacataaagtggtgggactc--atggattccactcaataaataagtg |
713 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
18716853 |
actttagaaataggtcccacataaagtggtgagactcatatggattccacccaataaataagtg |
18716790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 806
Target Start/End: Complemental strand, 28232066 - 28231999
Alignment:
| Q |
740 |
taacctatgctgacaaag-ttttgaatacctttacattttgatgttatgcgttttattatgctgcctt |
806 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||| |||| |||| ||||||||||||||| ||||||| |
|
|
| T |
28232066 |
taacctatgctgacaatgcttttaaatacctttgcattctgatcttatgcgttttattacactgcctt |
28231999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 613 - 686
Target Start/End: Original strand, 17354563 - 17354636
Alignment:
| Q |
613 |
actcacttttttatttggtaaaatcaatgttggtttttgacttttgaaataggtctcacataaagtggtgggac |
686 |
Q |
| |
|
||||||||||||||| |||||||||||||| || | ||||| ||||||| | |||||||||||||||||| |
|
|
| T |
17354563 |
actcacttttttattgggtaaaatcaatgtaggacctacactttggaaatagaacccacataaagtggtgggac |
17354636 |
T |
|
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Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 577 - 686
Target Start/End: Original strand, 49738924 - 49739033
Alignment:
| Q |
577 |
agtgctaggaacactctttttaatactctcttaaatactcacttttttatttggtaaaatcaatgttggtttttgacttttgaaataggtctcacataaa |
676 |
Q |
| |
|
|||||||||||||||||||| || ||||| || ||||||| ||||||||||| ||||| |||| ||| | ||||| ||||| |||| ||||||| |
|
|
| T |
49738924 |
agtgctaggaacactcttttcaactttctctctaacactcactcttttatttggtgaaatccatgtgggtcatacactttggaaattggtcccacataat |
49739023 |
T |
|
| Q |
677 |
gtggtgggac |
686 |
Q |
| |
|
|||||||||| |
|
|
| T |
49739024 |
gtggtgggac |
49739033 |
T |
|
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Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 579 - 642
Target Start/End: Complemental strand, 34818366 - 34818301
Alignment:
| Q |
579 |
tgctaggaaca--ctctttttaatactctcttaaatactcacttttttatttggtaaaatcaatgt |
642 |
Q |
| |
|
||||||||||| ||||||| | ||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
34818366 |
tgctaggaacattctcttttgagcactctctctaacactcacttttttatttggtaaaatcaatgt |
34818301 |
T |
|
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