View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4642-Insertion-2 (Length: 924)

Name: NF4642-Insertion-2
Description: NF4642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4642-Insertion-2
NF4642-Insertion-2
[»] chr2 (5 HSPs)
chr2 (603-858)||(24126259-24126520)
chr2 (628-858)||(42865919-42866155)
chr2 (621-843)||(11995595-11995823)
chr2 (621-858)||(40614911-40615145)
chr2 (676-824)||(17526665-17526814)
[»] chr3 (11 HSPs)
chr3 (16-236)||(2736919-2737137)
chr3 (671-825)||(25905846-25906001)
chr3 (672-850)||(37503099-37503278)
chr3 (613-841)||(30775560-30775795)
chr3 (754-850)||(1182498-1182594)
chr3 (672-821)||(3461499-3461650)
chr3 (657-742)||(1182622-1182708)
chr3 (657-710)||(43329071-43329124)
chr3 (707-845)||(41420429-41420568)
chr3 (603-651)||(43329125-43329173)
chr3 (868-917)||(23221708-23221755)
[»] chr7 (10 HSPs)
chr7 (603-843)||(8035728-8035974)
chr7 (628-858)||(38110543-38110779)
chr7 (621-843)||(45033540-45033768)
chr7 (628-858)||(46045909-46046145)
chr7 (603-833)||(5350021-5350255)
chr7 (14-241)||(44547185-44547397)
chr7 (603-833)||(3782382-3782614)
chr7 (671-843)||(2037608-2037773)
chr7 (622-739)||(5791323-5791446)
chr7 (672-769)||(7431729-7431827)
[»] chr8 (9 HSPs)
chr8 (603-858)||(45093443-45093704)
chr8 (621-858)||(42000277-42000520)
chr8 (628-843)||(33373215-33373436)
chr8 (621-850)||(35808212-35808447)
chr8 (615-843)||(9216240-9216475)
chr8 (672-843)||(14342862-14343033)
chr8 (603-731)||(31512243-31512378)
chr8 (859-917)||(39578526-39578582)
chr8 (751-801)||(44145858-44145908)
[»] chr5 (6 HSPs)
chr5 (628-833)||(239840-240051)
chr5 (603-858)||(32386490-32386751)
chr5 (628-858)||(14024937-14025173)
chr5 (659-831)||(30046625-30046798)
chr5 (751-801)||(4560311-4560361)
chr5 (858-912)||(21925265-21925317)
[»] chr1 (6 HSPs)
chr1 (603-858)||(16854947-16855208)
chr1 (628-858)||(6294018-6294254)
chr1 (628-858)||(39476062-39476298)
chr1 (614-850)||(28706002-28706243)
chr1 (658-843)||(5556018-5556204)
chr1 (628-732)||(38168207-38168317)
[»] chr4 (6 HSPs)
chr4 (628-858)||(1217161-1217397)
chr4 (603-843)||(44307541-44307787)
chr4 (628-858)||(1369436-1369672)
chr4 (628-858)||(28945237-28945473)
chr4 (621-850)||(36858670-36858905)
chr4 (784-843)||(44073064-44073123)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 2e-76; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 603 - 858
Target Start/End: Original strand, 24126259 - 24126520
Alignment:
Q  603 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacgga-----ctaagcatgcaagctctagaaatatcatcaaacaaaagactctga 697  Q
    |||| ||| |||||||  ||||||||||||||||||||||||||||||||     ||| |||||||||| || |||||||||||||||||||||||||||    
T  24126259 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggaagttcctaggcatgcaagccctggaaatatcatcaaacaaaagactctga 24126358  T
Q  698 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaag 796  Q
    |||||| |||||| |||||||  |||||||||||||||||||||||| ||| | || |||||||||||||||||| |||||||||||||||||||||| |    
T  24126359 agctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagtcaatctgcacttatgttgccttcacgccatg 24126458  T
Q  797 tatgggtaattttgacggtccaactcaaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||| ||||||||||| |||||||||||||||||||| | ||||||| |||||| |||||||    
T  24126459 tatgtgtaattttgacagtccaactcaaactcaaaagttgtcgaatacgcttgaccaaagta 24126520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 628 - 858
Target Start/End: Complemental strand, 42866155 - 42865919
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||||||||     || ||||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  42866155 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 42866056  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||||||||||| | ||| | || ||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  42866055 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttttgttgccttcccgccaagtatgggtaattttgacagtccaact 42865956  T
Q  822 caaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||| | ||||||| || ||| |||||||    
T  42865955 caaactcaaaagttgtcgaatacgcctgaccaaagta 42865919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 621 - 843
Target Start/End: Original strand, 11995595 - 11995823
Alignment:
Q  621 caaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg-agtc 714  Q
    |||||||||||||||||||||||||||||||||     ||  ||||||||| || |||||||||| ||| ||||||||||| |||||| |||||| ||||    
T  11995595 caaagaaaaagaaaactaagaaattaaacggacgttcctagacatgcaagcccttgaaatatcattaaaaaaaagactctggagctcactagggggagtc 11995694  T
Q  715 tccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacgg 814  Q
    |||  ||||||||||| |||||||||||| ||| | || ||||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||| |    
T  11995695 tccagaatatgaaaatatagaaaatccatcgaaatgctgaaattagcaagacaatctgcacttctgttgccttcacgccaagtataggtaattttgacag 11995794  T
Q  815 tccaactcaaactcaaaagctttcgaata 843  Q
    ||||||||||||||||||| | |||||||    
T  11995795 tccaactcaaactcaaaagttgtcgaata 11995823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 621 - 858
Target Start/End: Original strand, 40614911 - 40615145
Alignment:
Q  621 caaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagta-ggggagtc 714  Q
    |||||| ||||||||||||||||||||||||||     || |||||||||| | |||||||||||||||||||||||||||||||||| || ||||| ||    
T  40614911 caaagagaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccagaaatatcatcaaacaaaagactctgaagctcactaaggggattc 40615010  T
Q  715 tccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacgg 814  Q
    |||  ||||||||||||         ||| ||| | || ||||||||||  |||||| ||||| |||| ||||||||||||||||| ||||| ||||| |    
T  40615011 tccataatatgaaaatc---------catcgaaatgctgaaattagcaaaccaatctgcacttctgttaccttcacgccaagtatgagtaatattgacag 40615101  T
Q  815 tccaactcaaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    ||||||||||||||||||| | ||||||| |||||| |||||||    
T  40615102 tccaactcaaactcaaaagttgtcgaatacgcttgaccaaagta 40615145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 676 - 824
Target Start/End: Complemental strand, 17526814 - 17526665
Alignment:
Q  676 atcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctcca 774  Q
    |||| |||| |||||||||||||| |||  ||| |||| |||| ||| || |||||  | | ||||||| ||| | |||||||||||||||||| || ||    
T  17526814 atcaacaaataaaagactctgaagttcataaggaggaggctccaaaagattaaaattcatagaatccatcgaaatgctaaaattagcaagtcaaactaca 17526715  T
Q  775 cttatgttgccttcacgccaagtatgggtaattttgacggtccaactcaa 824  Q
    ||| ||||||| |||||| | |||||| |||||| ||| |||||||||||    
T  17526714 cttctgttgccctcacgcaatgtatggttaatttggacagtccaactcaa 17526665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 5e-71; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 2737137 - 2736919
Alignment:
Q  16 atggagagtatttgttttgttgannnnnnnnatttgttatttcatgattggattggttcttgaattgtagtgtcattttttcaaaaatctttcaaaattg 115  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  2737137 atggagagtatttgttttgttgatttttt--atttgttatttcatgattggattagttcttgaattgcagtgtcattttttcaaaaatctttcaaaattg 2737040  T
Q  116 agttctgtaaattgaattcattgatannnnnnnnngttgagattttaaatgtaacaactattagtttgtttaagatgttaatgtgatggggcaaaaagtg 215  Q
    |||| |||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  2737039 agttatgtaaattgaattcattgatatttttttttgttgagattttaaatgtaacaactattactttgtttaagatgttaatgtgatgggacaaaaagtg 2736940  T
Q  216 actcattgatcttcaatttta 236  Q
    ||||||| ||||| |||||||    
T  2736939 actcatttatcttaaatttta 2736919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 671 - 825
Target Start/End: Complemental strand, 25906001 - 25905846
Alignment:
Q  671 gaaatatcatcaaacaaaagactctgaagctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaat 769  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||   |||||| ||||||||||||||||||||| | || ||||||||||||||||    
T  25906001 gaaatatcatcaaacaaaagactctgaagctcactagggggagtctcaagaatatgtaaatctagaaaatccattgaaatgctgaaattagcaagtcaat 25905902  T
Q  770 ctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaactcaaa 825  Q
    || ||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  25905901 ctgcacttctgttgccttcacaccaagtatgagtaattttgacagtccaactcaaa 25905846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 672 - 850
Target Start/End: Complemental strand, 37503278 - 37503099
Alignment:
Q  672 aaatatcatcaaacaaaagactctgaagctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatc 770  Q
    ||||||||||||||| | |||||||||||||| |||||| | ||||   |||||||||||||||| ||||||| ||| | ||||||||||||||||||||    
T  37503278 aaatatcatcaaacacaggactctgaagctcactagggggattctctagaatatgaaaatctagagaatccatcgaaatgctaaaattagcaagtcaatc 37503179  T
Q  771 tccacttatgttgccttcacgccaagtatgggtaattttgacggtccaactcaaactcaaaagctttcgaatatgcttga 850  Q
    | ||||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| | ||||||| ||||||    
T  37503178 tgcacttctgttgccttcacgtcaagtatgggtaattttgacaatccaactcaaactcaaaagttgtcgaatacgcttga 37503099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 613 - 841
Target Start/End: Original strand, 30775560 - 30775795
Alignment:
Q  613 gcaaagttcaaaga-aaaagaaaactaagaaattaaacgga-----ctaagcatgcaagctc-tagaaatatcatcaaacaaaagactctgaagctcagt 705  Q
    |||||| ||||||| ||||||||||||||||||||||||||     |||  ||| ||||||| |||||||| | |||||||||||||| ||||| ||| |    
T  30775560 gcaaagctcaaagagaaaagaaaactaagaaattaaacggatgttcctagacatacaagctcctagaaataccgtcaaacaaaagactttgaagttcact 30775659  T
Q  706 agg-ggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggta 804  Q
    | | ||||||| |   ||||||||||||| |||||||||  || | || ||||||||||||||| ||  | ||||||||| ||||||||||  |||||||    
T  30775660 aagaggagtctacatgatatgaaaatctaaaaaatccatcaaaatgcttaaattagcaagtcaacctggatttatgttgctttcacgccaaa-atgggta 30775758  T
Q  805 attttgacggtccaactcaaactcaaaagctttcgaa 841  Q
    |||||||| |||| ||| |||||||||||||||||||    
T  30775759 attttgaccgtccgacttaaactcaaaagctttcgaa 30775795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 754 - 850
Target Start/End: Complemental strand, 1182594 - 1182498
Alignment:
Q  754 aaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaactcaaactcaaaagctttcgaatatgcttga 850  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||| ||| ||||||    
T  1182594 aaattagcaagtcaatatgcacttatgttgccttcacgccaagtattggtaattttgatagtccaactcaaactcaaaagatttcggatacgcttga 1182498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 672 - 821
Target Start/End: Original strand, 3461499 - 3461650
Alignment:
Q  672 aaatatcatcaaacaaaagactctgaagctcagta-ggggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagc-aagtcaat 769  Q
    |||||||||||||||||||||||||||| ||| || ||||| |||||  ||||||||||||||||||||| |||||  | || |||||||| ||| ||||    
T  3461499 aaatatcatcaaacaaaagactctgaagttcattagggggattctccagaatatgaaaatctagaaaatctattgatatgctcaaattagcaaagccaat 3461598  T
Q  770 ctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
     | ||||| ||| ||||||| ||||| |||| |||||||| |||||||||||    
T  3461599 atgcacttttgtagccttcatgccaaatatgagtaattttaacggtccaact 3461650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 657 - 742
Target Start/End: Complemental strand, 1182708 - 1182622
Alignment:
Q  657 gcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtag-gggagtctccgaaatatgaaaatctagaaaatcca 742  Q
    |||||||||| | | |||||||||||||||||| |||| |||||||| ||| |||||||||| ||||||||| ||||| ||||||||    
T  1182708 gcatgcaagccccaaaaatatcatcaaacaaaatactcagaagctcactagagggagtctccaaaatatgaatatctataaaatcca 1182622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 710
Target Start/End: Original strand, 43329071 - 43329124
Alignment:
Q  657 gcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg 710  Q
    |||||||||||| | |||||||||||||||||||||||||||||||| ||||||    
T  43329071 gcatgcaagctccaaaaatatcatcaaacaaaagactctgaagctcactagggg 43329124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 707 - 845
Target Start/End: Original strand, 41420429 - 41420568
Alignment:
Q  707 ggggagtctccgaaatatgaaaatctagaaaatccattgaagtact-aaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaa 805  Q
    ||||||||||  ||||| || |||||||||||| ||| ||| |  | |||||||||||| || | |||| || ||||| |||||| ||| |||||| |||    
T  41420429 ggggagtctcaaaaatacgagaatctagaaaattcatcgaaatgatgaaaattagcaagccagtatccatttttgttgtcttcacaccaggtatggataa 41420528  T
Q  806 ttttgacggtccaactcaaactcaaaagctttcgaatatg 845  Q
     ||||||  ||||| |||||||||||||||||| ||||||    
T  41420529 ctttgactatccaattcaaactcaaaagctttcaaatatg 41420568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 603 - 651
Target Start/End: Complemental strand, 43329173 - 43329125
Alignment:
Q  603 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacgg 651  Q
    |||| ||| |||||||  |||||||||||||||||||||||||||||||    
T  43329173 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacgg 43329125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 868 - 917
Target Start/End: Original strand, 23221708 - 23221755
Alignment:
Q  868 aaagcattggaaattccgaggcacaaaactccttgggaaatcgtccatat 917  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||||    
T  23221708 aaagcattg-aaattccgaggcacaaaactcctt-gaaaatcgtccatat 23221755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 2e-67; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 603 - 843
Target Start/End: Complemental strand, 8035974 - 8035728
Alignment:
Q  603 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 697  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||| |||     || |||||||||| |  |||||||||||||||||||||||||||    
T  8035974 acaaaagagggcaaagctcaaagaaaaagaaaactaagaaattaaactgacgtttctaggcatgcaagccccggaaatatcatcaaacaaaagactctga 8035875  T
Q  698 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaag 796  Q
    |||| | |||||| |||||||  |||||||||||||||||||||||| ||| | || ||||||||||| |||||| ||||| ||||||||||||||||||    
T  8035874 agctaactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgccaag 8035775  T
Q  797 tatgggtaattttgacggtccaactcaaactcaaaagctttcgaata 843  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||    
T  8035774 tatgggtaattttgacagtccaactcaaactcaaaagttgtcgaata 8035728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 628 - 858
Target Start/End: Original strand, 38110543 - 38110779
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||||||||     || |||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  38110543 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccagaaatatcatcaaacaaaagactctgaagctcactaggtggagtctccagaa 38110642  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||||||||||| | ||| | || ||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  38110643 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgggtaattttgacagtccaact 38110742  T
Q  822 caaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||| | ||||||| || ||| |||||||    
T  38110743 caaactcaaaagttgtcgaatacgcctgaccaaagta 38110779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 621 - 843
Target Start/End: Original strand, 45033540 - 45033768
Alignment:
Q  621 caaagaaaaagaaaactaagaaattaaacgga-----ctaagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg-agtc 714  Q
    ||||||||||||||||||| ||||||||||||     ||  ||||| ||||||  ||||||||||||||||||||||||||||  ||| |||||| ||||    
T  45033540 caaagaaaaagaaaactaaaaaattaaacggatgttcctgggcatgtaagctccggaaatatcatcaaacaaaagactctgaaattcattagggggagtc 45033639  T
Q  715 tccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacgg 814  Q
    |||  |||||||||||||||||||||||| ||| | || ||||||||||| |||||| ||||||||||| ||||| ||||| |||||||||||||||| |    
T  45033640 tccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatctgcacttatgttgtcttcaagccaaatatgggtaattttgacag 45033739  T
Q  815 tccaactcaaactcaaaagctttcgaata 843  Q
    ||||||||||||||||||| | |||||||    
T  45033740 tccaactcaaactcaaaagttgtcgaata 45033768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 628 - 858
Target Start/End: Complemental strand, 46046145 - 46045909
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||||||||     ||  ||||||||| |  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  46046145 aaagaaaactaagaaattaaacggacgttcctagacatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 46046046  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||||||||||| | ||| | || ||||||||||| |||||| ||||| |||||||||| ||||||||||| ||| ||||||| ||||||||    
T  46046045 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgtgtagttttgacagtccaact 46045946  T
Q  822 caaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||| | ||||||| || ||| |||||||    
T  46045945 caaactcaaaagttgtcgaatacgcctgaccaaagta 46045909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 603 - 833
Target Start/End: Complemental strand, 5350255 - 5350021
Alignment:
Q  603 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 697  Q
    |||| ||| |||||||  |||||||||||||||||||| ||||||||||||     || |||| ||||  || |||||||||||||||||||||||||||    
T  5350255 acaaaagagggcaaagcccaaagaaaaagaaaactaaggaattaaacggacgttcctaggcatacaagtcctggaaatatcatcaaacaaaagactctga 5350156  T
Q  698 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaag 796  Q
    |||||| |||||| ||||||   |||||||| ||  ||||||||||| ||| | || ||||||||||| |||||| ||||| ||||||||||||||||||    
T  5350155 agctcactagggggagtctctagaatatgaatat--agaaaatccatcgaaatgctgaaattagcaagccaatctgcacttttgttgccttcacgccaag 5350058  T
Q  797 tatgggtaattttgacggtccaactcaaactcaaaag 833  Q
    |||||||||||||||| ||||||||||||||||||||    
T  5350057 tatgggtaattttgacagtccaactcaaactcaaaag 5350021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 44547185 - 44547397
Alignment:
Q  14 atatggagagtatttgttttgttgannnnnnnnatttgttatttcatgattggattggttcttgaattgtagtgtcattttttcaaaaatctttcaaaat 113  Q
    |||||||||||||||||||||||||        |||||||| |||||||||||||| |||||||||||| ||||||||||||||||||           |    
T  44547185 atatggagagtatttgttttgttgatttttt--atttgttaattcatgattggattagttcttgaattgcagtgtcattttttcaaaa-----------t 44547271  T
Q  114 tgagttctgtaaattgaattcattgatannnnnnnnngttgagattttaaatgtaacaactattagtttgtttaagatgttaatgtgatggggcaaaaag 213  Q
    |||||| |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44547272 tgagttatgtaaattgaattcattgatattttttt--gttgagattttaaatgtaacaactattagtttgtttaagatgttaatgtgatgggacaaaaag 44547369  T
Q  214 tgactcattgatcttcaattttagatgg 241  Q
    ||||||||||||||| ||||||| ||||    
T  44547370 tgactcattgatctttaattttaaatgg 44547397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 603 - 833
Target Start/End: Complemental strand, 3782614 - 3782382
Alignment:
Q  603 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 697  Q
    |||| ||| ||||||||| ||||| ||||||||||||||||||||||| ||     || ||||| ||  ||||||||||| |||||||  ||||||||||    
T  3782614 acaaaagagggcaaagtttaaagagaaagaaaactaagaaattaaacgaacgtttttaggcatgtaaattctagaaatattatcaaacgtaagactctga 3782515  T
Q  698 agctcagtaggggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagt 797  Q
    || ||| ||||    |||||  ||||||||||| || ||||| ||| ||| | || |||||||||||||||||| ||||| ||||||||||||  ||| |    
T  3782514 agttcattagga---tctccagaatatgaaaatttaaaaaattcatcgaaatgctgaaattagcaagtcaatctacacttttgttgccttcacctcaaat 3782418  T
Q  798 atgggtaattttgacggtccaactcaaactcaaaag 833  Q
    |||  |||||||| ||||||||||||||||||||||    
T  3782417 atgaataattttgtcggtccaactcaaactcaaaag 3782382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 671 - 843
Target Start/End: Original strand, 2037608 - 2037773
Alignment:
Q  671 gaaatatcatcaaacaaaagactctgaagctcagtaggg-gagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaat 769  Q
    |||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||||||| |||||| ||||        ||||||||||| ||||    
T  2037608 gaaatatcatcaaacaaatgactctgaagttcattagggagagtctccaaaatatgaaaatctaaaaaatctattg--------aaattagcaagccaat 2037699  T
Q  770 ctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaactcaaactcaaaagctttcgaata 843  Q
     | ||||| ||||| |||||| |||||||||| |||||||||| ||| |||||||||||||||| | |||||||    
T  2037700 ttgcacttctgttgtcttcacaccaagtatggttaattttgacagtctaactcaaactcaaaagatgtcgaata 2037773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 622 - 739
Target Start/End: Original strand, 5791323 - 5791446
Alignment:
Q  622 aaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtag-gggagtct 715  Q
    ||||| ||||||||||||||||||||||||||     ||  ||||||||| |   |||||||||||||||||||||||||||||||| ||| ||||||||    
T  5791323 aaagagaaagaaaactaagaaattaaacggacgttcttagacatgcaagccccgaaaatatcatcaaacaaaagactctgaagctcactagagggagtct 5791422  T
Q  716 ccgaaatatgaaaatctagaaaat 739  Q
    ||| ||||||||||||||||||||    
T  5791423 ccggaatatgaaaatctagaaaat 5791446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 672 - 769
Target Start/End: Original strand, 7431729 - 7431827
Alignment:
Q  672 aaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaat 769  Q
    ||||||||||||| | || ||||||||||||| |||| ||| |||||  ||||| |||||||| | ||||||||||| |  | ||||||||||| ||||    
T  7431729 aaatatcatcaaatacaacactctgaagctcattaggaggattctccagaatataaaaatctaaagaatccattgaaatgttgaaattagcaagccaat 7431827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 7e-67; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 603 - 858
Target Start/End: Complemental strand, 45093704 - 45093443
Alignment:
Q  603 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 697  Q
    |||| ||| |||||||  |||||||||||||||||||||||||||||||||     || |||||||||| |  |||||||||||||||||||||||||||    
T  45093704 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctga 45093605  T
Q  698 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaag 796  Q
    |||||| |||||| ||||| |  |||||||||||||||||||||||| ||| | || ||||| ||||| |||||| ||||| ||||||||||||||||||    
T  45093604 agctcactagggggagtcttcagaatatgaaaatctagaaaatccatcgaaatgctgaaatttgcaagccaatctgcacttctgttgccttcacgccaag 45093505  T
Q  797 tatgggtaattttgacggtccaactcaaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||||||| |||||||||||||||||||| | ||||||| || ||| |||||||    
T  45093504 tatgggtaattttgacagtccaactcaaactcaaaagttgtcgaatacgcctgaccaaagta 45093443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 621 - 858
Target Start/End: Complemental strand, 42000520 - 42000277
Alignment:
Q  621 caaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtaggg-gagtc 714  Q
    |||||||||||||||||||||||||||||| ||     || |||||||||| |  ||||||||||||||||||||||| ||||||||| ||||| |||||    
T  42000520 caaagaaaaagaaaactaagaaattaaacgaacattcctatgcatgcaagccccggaaatatcatcaaacaaaagactttgaagctcactagggagagtc 42000421  T
Q  715 tccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacgg 814  Q
    |||  |||||||||||||||||| ||||| ||| | || ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |    
T  42000420 tccagaatatgaaaatctagaaattccatcgaaatgctgaaattagcaagccaatctgcacttttgttgccttcacgccaagtatgggtaattttgacag 42000321  T
Q  815 tccaactcaaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    ||||||||||||||||||| | ||||||| || ||| |||||||    
T  42000320 tccaactcaaactcaaaagttgtcgaatacgcctgaccaaagta 42000277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 628 - 843
Target Start/End: Complemental strand, 33373436 - 33373215
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||||||||     || ||||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  33373436 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 33373337  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||||||||||| | ||| | || ||||||||||  |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  33373336 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaatccaatctgcacttttgttgccttcccgccaagtatgggtaattttgacagtccaact 33373237  T
Q  822 caaactcaaaagctttcgaata 843  Q
    |||||||||||| | |||||||    
T  33373236 caaactcaaaagttgtcgaata 33373215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 621 - 850
Target Start/End: Complemental strand, 35808447 - 35808212
Alignment:
Q  621 caaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg-agtc 714  Q
    |||||| ||||||||||||||||||||| ||||     || |||||||||| |  ||||||| ||||||||||||||||||||||||| |||||| | ||    
T  35808447 caaagagaaagaaaactaagaaattaaaaggacgttcctaggcatgcaagccccggaaatataatcaaacaaaagactctgaagctcactagggggattc 35808348  T
Q  715 tccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacgg 814  Q
    |||  |||||||| ||||||| ||||||| ||| |  |  |||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |    
T  35808347 tccataatatgaagatctagagaatccatcgaaatgttgtaattagcaagccaatctgcacttctgttgccttcacgccaagtatgggtaattttgaccg 35808248  T
Q  815 tccaactcaaactcaaaagctttcgaatatgcttga 850  Q
    ||||||||||||||||||||| ||||||| ||||||    
T  35808247 tccaactcaaactcaaaagctgtcgaatacgcttga 35808212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 615 - 843
Target Start/End: Complemental strand, 9216475 - 9216240
Alignment:
Q  615 aaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtaggg 709  Q
    |||||| ||||| |||||||||||| |||||||||||||     || ||||| |||  |   |||||||| ||||||||| ||||||||||||| |||||    
T  9216475 aaagtttaaagagaaagaaaactaataaattaaacggacgttcctatgcatgtaagtcccgaaaatatcaacaaacaaaaaactctgaagctcactaggg 9216376  T
Q  710 g-agtctccga-aatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaatt 807  Q
    | ||||||| | |||||||||||||| ||||||||| ||||| || ||||||| ||| |||| | ||||| ||||||||||||  |||||||| ||||||    
T  9216375 ggagtctccaagaatatgaaaatctaaaaaatccatcgaagtgctgaaattaggaagccaatttgcacttttgttgccttcacatcaagtatgcgtaatt 9216276  T
Q  808 ttgacggtccaactcaaactcaaaagctttcgaata 843  Q
    |||||  |||||||||||||||||||||||| ||||    
T  9216275 ttgacattccaactcaaactcaaaagctttcaaata 9216240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 672 - 843
Target Start/End: Original strand, 14342862 - 14343033
Alignment:
Q  672 aaatatcatcaaacaaaagactctgaagctcagtaggg-gagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatc 770  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||| |  |||||||||||||||||||| ||||||| |  | |||||| |||||||| |    
T  14342862 aaatatcatcaaacaaa-gactctgaagctcattagggagagtcttcagaatatgaaaatctagaaaattcattgaaatgttgaaattaccaagtcaaac 14342960  T
Q  771 tccacttatgttgccttcacgccaagtatgggtaattttgacggtccaactcaaactcaaaagctttcgaata 843  Q
    | | |||||||||| |||||||||||||||  |||||||| | ||| | |||||| ||||||| |||||||||    
T  14342961 tgcgcttatgttgcattcacgccaagtatgaataattttgtctgtctagctcaaattcaaaagttttcgaata 14343033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 603 - 731
Target Start/End: Original strand, 31512243 - 31512378
Alignment:
Q  603 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaag-ctctagaaatatcatcaaacaaaagactctg 696  Q
    |||| ||| |||||||||||||||||||||||| |||||||||||||||||     || | ||||||| | | | |||||||||||||||||||| ||||    
T  31512243 acaaaagagggcaaagttcaaagaaaaagaaaattaagaaattaaacggacgttcttaggtatgcaagccccgaaaaatatcatcaaacaaaagattctg 31512342  T
Q  697 aagctcagta-ggggagtctccgaaatatgaaaatc 731  Q
    ||||||| || ||||||||| |  ||||||||||||    
T  31512343 aagctcactagggggagtcttcagaatatgaaaatc 31512378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 859 - 917
Target Start/End: Complemental strand, 39578582 - 39578526
Alignment:
Q  859 cactacaagaaagcattggaaattccgaggcacaaaactccttgggaaatcgtccatat 917  Q
    |||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||    
T  39578582 cactacaagaaagcattg-aaattccgaggcacaaaactcctt-agaaatcgtccatat 39578526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 801
Target Start/End: Complemental strand, 44145908 - 44145858
Alignment:
Q  751 ctaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgg 801  Q
    ||||||||||||||||||||  ||||| | || ||||||||||||||||||    
T  44145908 ctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatgg 44145858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 1e-65; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 628 - 833
Target Start/End: Original strand, 239840 - 240051
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||||||||     || ||||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  239840 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 239939  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  239940 tatgaaaatctagaaaatccattgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgggtaattttgacagtccaact 240039  T
Q  822 caaactcaaaag 833  Q
    ||||||||||||    
T  240040 caaactcaaaag 240051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 603 - 858
Target Start/End: Complemental strand, 32386751 - 32386490
Alignment:
Q  603 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 697  Q
    |||| ||| |||||||| |||||||||| |||| ||||||||||||||| |     || |||| ||||  |  |||||||||||||||||||||||||||    
T  32386751 acaaaagagggcaaagtccaaagaaaaaaaaaattaagaaattaaacgggcgtttctaggcatacaagtcccggaaatatcatcaaacaaaagactctga 32386652  T
Q  698 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaag 796  Q
    |||||| |||||| |||||||  |||||||||||||||||||||||| ||| | || |||||||||||||||||  ||||||||||||||||||||||||    
T  32386651 agctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagtcaatcagcacttatgttgccttcacgccaag 32386552  T
Q  797 tatgggtaattttgacggtccaactcaaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||||||| |||||||||||||||||||| | ||||||| || ||| |||||||    
T  32386551 tatgggtaattttgacagtccaactcaaactcaaaagttgtcgaatacgcctgaccaaagta 32386490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 628 - 858
Target Start/End: Complemental strand, 14025173 - 14024937
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||||||||     || |||||||||| |  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  14025173 aaagaaaactaagaaattaaacggacgttcttaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 14025074  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||||||||||| | ||| | || ||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  14025073 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgggtaattttgacagtccaact 14024974  T
Q  822 caaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||| | ||||||| || ||| |||||||    
T  14024973 caaactcaaaagttgtcgaatacgcctgaccaaagta 14024937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 659 - 831
Target Start/End: Complemental strand, 30046798 - 30046625
Alignment:
Q  659 atgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaat 757  Q
    ||||||||| |  ||||||||||||||||||||||||||| |||| |||||| | |||||  ||||||||||||||||||||||||  || |  | ||||    
T  30046798 atgcaagctttgaaaatatcatcaaacaaaagactctgaaactcactagggggattctccataatatgaaaatctagaaaatccatcaaaatgttgaaat 30046699  T
Q  758 tagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaactcaaactcaaa 831  Q
    |||| || |||||| ||||| | ||  ||||||| |||| || |||||||||||| ||||||||||||||||||    
T  30046698 tagcgagccaatctacacttcttttatcttcacgtcaagaataggtaattttgacagtccaactcaaactcaaa 30046625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 801
Target Start/End: Original strand, 4560311 - 4560361
Alignment:
Q  751 ctaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgg 801  Q
    ||||||||||||||||||||  ||||| | || ||||||||||||||||||    
T  4560311 ctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatgg 4560361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 858 - 912
Target Start/End: Original strand, 21925265 - 21925317
Alignment:
Q  858 acactacaagaaagcattggaaattccgaggcacaaaactccttgggaaatcgtc 912  Q
    ||||||||||||| || || |||||||||||||||||||||| ||||||||||||    
T  21925265 acactacaagaaatcactg-aaattccgaggcacaaaactcc-tgggaaatcgtc 21925317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 1e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 603 - 858
Target Start/End: Complemental strand, 16855208 - 16854947
Alignment:
Q  603 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 697  Q
    |||| ||| |||||||  |||||||||||||||||||||||||||||||||     |   ||||||||| |   |||||| |||||||||||||||||||    
T  16855208 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggacgttccttgacatgcaagccccgaaaatattatcaaacaaaagactctga 16855109  T
Q  698 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaag 796  Q
    |||||| |||||| ||||| |  |||||||||||||||||||||||||||| | || ||||||||||| |||||| ||||| |||||||||| |||||||    
T  16855108 agctcactagggggagtcttcagaatatgaaaatctagaaaatccattgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaag 16855009  T
Q  797 tatgggtaattttgacggtccaactcaaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||||||| |||||||||||||||||||| | ||||||| || ||| |||||||    
T  16855008 tatgggtaattttgacagtccaactcaaactcaaaagttgtcgaatacgcctgaccaaagta 16854947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 628 - 858
Target Start/End: Complemental strand, 6294254 - 6294018
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||||||||     || |||||||||| |  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  6294254 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 6294155  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||||||||||| | ||| | || ||||||||||| |||||| ||||| |||||||||| ||||||||||| ||||||||||| ||||||||    
T  6294154 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgtgtaattttgacagtccaact 6294055  T
Q  822 caaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||| | ||||||| || ||| |||||||    
T  6294054 caaactcaaaagttgtcgaatacgcctgaccaaagta 6294018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 628 - 858
Target Start/End: Complemental strand, 39476298 - 39476062
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg-agtctccgaaa 721  Q
    |||||||| |||||||||||||||||     || ||||||||| |  ||||||||| |||||||||||| | ||||| ||| |||||| ||||| |   |    
T  39476298 aaagaaaagtaagaaattaaacggacgttcctaggcatgcaagtttcagaaatatcgtcaaacaaaagattttgaagttcactagggggagtcttcagga 39476199  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||||||||||||| ||| | || ||||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||     
T  39476198 tatgaaaatctagaaaatccatcgaaatgctgaaattagcaagacaatctgcacttttgttgccttcacgccaagtatgagtaattttgacggtccaacc 39476099  T
Q  822 caaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||||| |||||||| | ||| |||||||    
T  39476098 caaactcaaaagctatcgaatatacctgaccaaagta 39476062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 614 - 850
Target Start/End: Complemental strand, 28706243 - 28706002
Alignment:
Q  614 caaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg 708  Q
    |||||| |||||| | |||||||||| |||||||||||||     || ||||||| || |  ||||||||||||||||||||||| ||||||| | ||||    
T  28706243 caaagtccaaagagatagaaaactaaaaaattaaacggacgttcctaggcatgcaggcccc-gaaatatcatcaaacaaaagactatgaagcttactagg 28706145  T
Q  709 gg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaatt 807  Q
    || | ||||| ||||||||||||||| ||||||||| ||| | || ||||||||||| |||| | ||||| ||||||||||||||||||||||||| |||    
T  28706144 ggtattctccaaaatatgaaaatctaaaaaatccatcgaaatgctgaaattagcaagccaatatacacttttgttgccttcacgccaagtatgggttatt 28706045  T
Q  808 ttgacggtccaactcaaactcaaaagctttcgaatatgcttga 850  Q
    ||||| |||||||||||||||||||| | ||||||| ||||||    
T  28706044 ttgacagtccaactcaaactcaaaagttgtcgaatacgcttga 28706002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 658 - 843
Target Start/End: Complemental strand, 5556204 - 5556018
Alignment:
Q  658 catgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtag-gggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaa 756  Q
    ||||||||| |||||||||||||||||||||||| || |||||||| ||| |||||||||   |||||||||||||| |||||| || ||| | || |||    
T  5556204 catgcaagccctagaaatatcatcaaacaaaagaatcagaagctcattagagggagtctctagaatatgaaaatctaaaaaatctatcgaaatgctgaaa 5556105  T
Q  757 ttagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaactcaaactcaaaagctttcgaata 843  Q
    ||||||||||| ||| |||||||||| |||||| ||||| |||||||||||||||| |||||| ||||||||||||| | |||||||    
T  5556104 ttagcaagtcattctgcacttatgttaccttcatgccaaatatgggtaattttgacagtccaaatcaaactcaaaagttgtcgaata 5556018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 628 - 732
Target Start/End: Original strand, 38168207 - 38168317
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||||||||     || |||||||||| |  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  38168207 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 38168306  T
Q  722 tatgaaaatct 732  Q
    |||||||||||    
T  38168307 tatgaaaatct 38168317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 4e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 628 - 858
Target Start/End: Complemental strand, 1217397 - 1217161
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||||||||     || |||||||||| |  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  1217397 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 1217298  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||| ||||||| | ||| | || ||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  1217297 tatgaaaatctaaaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgggtaattttgacagtccaact 1217198  T
Q  822 caaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||| | ||||||| || ||| |||||||    
T  1217197 caaactcaaaagttgtcgaatacgcctgaccaaagta 1217161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 603 - 843
Target Start/End: Complemental strand, 44307787 - 44307541
Alignment:
Q  603 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 697  Q
    |||| ||| |||||||  |||||||||||||||||||||||||||||| ||     || |||||||||| |    ||||||||||| |||||||||||||    
T  44307787 acaaaagagggcaaagcacaaagaaaaagaaaactaagaaattaaacgaacgttcctaggcatgcaagccccgataatatcatcaaccaaaagactctga 44307688  T
Q  698 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaag 796  Q
    |||||| |||||| |||||||  |||||||||||||||||||||||| ||| | || ||||||||||| |||||| ||||| ||||||||||||||||||    
T  44307687 agctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgccaag 44307588  T
Q  797 tatgggtaattttgacggtccaactcaaactcaaaagctttcgaata 843  Q
    ||||||||||||||||  ||||||||||||||||||| | |||||||    
T  44307587 tatgggtaattttgacaatccaactcaaactcaaaagttgtcgaata 44307541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 628 - 858
Target Start/End: Complemental strand, 1369672 - 1369436
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||| ||||     || ||||||||| ||  ||||||||||||||||||||||||||||||||| |||| ||||||||   ||    
T  1369672 aaagaaaactaagaaattaaatggacgttcctaggcatgcaagttccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcaagaa 1369573  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||||||||||| | ||| | || ||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  1369572 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgggtaattttgacagtccaact 1369473  T
Q  822 caaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||| | ||||||| || ||| |||||||    
T  1369472 caaactcaaaagttgtcgaatacgcctgaccaaagta 1369436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 628 - 858
Target Start/End: Original strand, 28945237 - 28945473
Alignment:
Q  628 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 721  Q
    ||||||||||||||||||||||||||     || ||||| |||  |   |||||||||||||||||||||| ||||||||| |||| ||||||||   ||    
T  28945237 aaagaaaactaagaaattaaacggacgttcctaggcatgtaagtcccgaaaatatcatcaaacaaaagactttgaagctcactaggaggagtctctagaa 28945336  T
Q  722 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacggtccaact 821  Q
    |||||||||||| ||||||| | ||| | || ||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  28945337 tatgaaaatctaaaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgggtaattttgacagtccaact 28945436  T
Q  822 caaactcaaaagctttcgaatatgcttgagcaaagta 858  Q
    |||||||||||| | ||||||| || ||| |||||||    
T  28945437 caaactcaaaagttgtcgaatacgcctgaccaaagta 28945473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 621 - 850
Target Start/End: Original strand, 36858670 - 36858905
Alignment:
Q  621 caaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg-agtc 714  Q
    |||||| ||||||||||||||||||||| ||||     || |||||||||  |  ||||||||||||||||||||||||||||||||| |||||| | ||    
T  36858670 caaagagaaagaaaactaagaaattaaaaggacgttcctacgcatgcaagtcccggaaatatcatcaaacaaaagactctgaagctcactagggggattc 36858769  T
Q  715 tccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacttatgttgccttcacgccaagtatgggtaattttgacgg 814  Q
    |||  |||||||| ||||||| ||||||| ||| | ||  |||||| |||||||| | ||||| ||||||||||| ||| |||||||||||||||||| |    
T  36858770 tccagaatatgaagatctagagaatccatcgaaatgctgtaattagtaagtcaatttgcacttttgttgccttcatgcctagtatgggtaattttgaccg 36858869  T
Q  815 tccaactcaaactcaaaagctttcgaatatgcttga 850  Q
    || |||||||||||||||| | ||||||| ||||||    
T  36858870 tctaactcaaactcaaaagttgtcgaatacgcttga 36858905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 784 - 843
Target Start/End: Original strand, 44073064 - 44073123
Alignment:
Q  784 ccttcacgccaagtatgggtaattttgacggtccaactcaaactcaaaagctttcgaata 843  Q
    ||||||| ||||||||| |||||||||||   |||||||||||||||||||||| |||||    
T  44073064 ccttcacaccaagtatgagtaattttgactacccaactcaaactcaaaagcttttgaata 44073123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University