View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4642-Insertion-3 (Length: 656)
Name: NF4642-Insertion-3
Description: NF4642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4642-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 608
Target Start/End: Original strand, 812314 - 812910
Alignment:
| Q |
8 |
atagtaaccaacctagaagccaataatagcatacannnnnnnnnnnnaaagtgaaatgaatataaaatgaaatgaaatattagtttatatcacaaactaa |
107 |
Q |
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| T |
812314 |
atagtaaccaacctagaagccaagaatagcatacatgtgtgtgtg--aaagtgaaatgaatataaaatgaaatgaaatagt--tttatttcacaaactaa |
812409 |
T |
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| Q |
108 |
gagaatccgcaatgaatttggagttggtgcattaacttgtgtggcacatttactactctcaactgtccgatttggtttaacggctgagatcatacagctt |
207 |
Q |
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| T |
812410 |
gagaatccacaatgaatttggagttggtgcattaacttgtgtggcacatttacttctctcaactgtccgatttggtttaacggctgagatcatacagctt |
812509 |
T |
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| Q |
208 |
cactaaaactgatgtgtaatcttaacagtctaatctcaaattatcgattaaagttaattacaatgtaaagtagtttggaactctacatcacatcacacat |
307 |
Q |
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| T |
812510 |
cactaaaattgatgtgtaatcttaacagtctaatctcaaattatcgattaaaattaattacaatgtaaagtagtttggaactctacatcaca-catagaa |
812608 |
T |
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| Q |
308 |
agccctatatatcctgagcactcttgctagtggaatattattatcttagctggtttgtgcatccaagcaagctcttccgttgcaactaaagggctgctac |
407 |
Q |
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| T |
812609 |
ctatatatatatcctgagcactcttgctagtggaatattattatcttagctggtttgtgcatccaaacaagctcttccgttgcaactaaagggctgctac |
812708 |
T |
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| Q |
408 |
ttattaagaagcacaattaattaaattttacatacatctcataatacattttaaagcatgtctcatgaaaacaaaacaatacaatataataccccataag |
507 |
Q |
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| T |
812709 |
ttattaagaagcacaattaattaaattttacatacatctcataatacattttaaagcatatctcatgaaaacaaaacaatacaatacaataccccataag |
812808 |
T |
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| Q |
508 |
tacacnnnnnnncaaatttgaattactaagaaagtcaattataaacaatctctacacaaccgcaccaccccattaaatagtttcat-aagggggaaaggg |
606 |
Q |
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| T |
812809 |
tacacaaaaaaaaaaaattgaattactaagaaagtcaattataaacaatctctgcacaaccgcaccaccccattaaatagtttcatgaggggggaaaggg |
812908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 460
Target Start/End: Complemental strand, 14306516 - 14306468
Alignment:
| Q |
412 |
taagaagcacaattaattaaattttacatacatctcataatacatttta |
460 |
Q |
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| T |
14306516 |
taagaagcacaattgattaaatttcatatccatctcataatacatttta |
14306468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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