View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4642_high_9 (Length: 325)

Name: NF4642_high_9
Description: NF4642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4642_high_9
NF4642_high_9
[»] chr7 (3 HSPs)
chr7 (5-317)||(28216925-28217235)
chr7 (5-315)||(28232968-28233277)
chr7 (5-317)||(28237797-28238091)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 5 - 317
Target Start/End: Original strand, 28216925 - 28217235
Alignment:
Q  5 tcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtccacaaaacctattccatcgaaactcctgtccc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  28216925 tcactagccttttccaacccagactccttcacctcctgcacat-ttttgtgaagcttagattgctgtccacaaaacccattccatcaaaacacctgtccc 28217023  T
Q  105 gcagcgatgctttatcagtctcttccactgggacacacgtcttctccttcttaatctttttcctagataaaggaagaaccaccttagaattgcatgcagc 204  Q
     |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  28217024 acagcgatgctttttcagtctcttccattgggacacacgtcttctccttcttaatctttttcctaggtaaaggaagaaccaccttagaatcgcatgcagc 28217123  T
Q  205 ggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctgagttccccccaccttttctcttgagcttgca 304  Q
    ||  ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28217124 ggaatcattgttc-aaaggtggtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctgagtttcccccaccttttctcttgagcttgca 28217222  T
Q  305 gattgtaacacca 317  Q
    |||||||||||||    
T  28217223 gattgtaacacca 28217235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 5 - 315
Target Start/End: Original strand, 28232968 - 28233277
Alignment:
Q  5 tcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtccacaaaacctattccatcgaaactcctgtccc 104  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  28232968 tcaccagctttttccaacccagactccttcacctcctgcacgtcttttgtgaagcttagattgctgtccacaaaacccattccatcgaacctcctgtccc 28233067  T
Q  105 gcagcgatgctttatcagtctcttccactgggacacacgtcttctccttcttaatctttttcctagataaaggaagaaccaccttagaattgcatgcagc 204  Q
     |||||||||| |||||||| |||||| ||||||||| |||||||||||||||||| ||||||||| | ||| ||||||||||||||||   ||||||||    
T  28233068 acagcgatgctatatcagtcccttccattgggacacaagtcttctccttcttaatccttttcctaggtgaagaaagaaccaccttagaaccacatgcagc 28233167  T
Q  205 ggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctgagttccccccaccttttctcttgagcttgca 304  Q
     |||   |||||| ||| || ||||||||||||||||| |||||||||||||||||| ||| | || |||| | || ||||||||||| ||||| ||||     
T  28233168 tgccatgttgttc-aaacgtggtgcagcaataggttctttgtctgaaagtgacggtggcccattctttgagcttccgccaccttttcttttgagtttgcg 28233266  T
Q  305 gattgtaacac 315  Q
    |||||||||||    
T  28233267 gattgtaacac 28233277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 317
Target Start/End: Original strand, 28237797 - 28238091
Alignment:
Q  5 tcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtccacaaaacctattccatcgaaactcctgtccc 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||| || ||||  ||||    
T  28237797 tcactagctttttccaacccagactccttcacctcctgcacatcttttgcgaagcatagatttctgtccacaaaatccattccatcaaacctcccatccc 28237896  T
Q  105 gcagcgatgctttatcagtctcttccactgggacacacgtcttctccttcttaatctttttcctagataaaggaagaaccaccttagaattgcatgcagc 204  Q
     ||||||||| ||                |||||||| || ||||||||||||||| ||||||||| | ||||||||||  ||||||||| |||||||||    
T  28237897 acagcgatgcatt----------------gggacacaagt-ttctccttcttaatccttttcctaggtgaaggaagaacagccttagaatcgcatgcagc 28237979  T
Q  205 ggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctgagttccccccaccttttctcttgagcttgca 304  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  28237980 ggcctcattgttcaaa-ggttgtgcagcaataggttctgcgtctgaaagtgacggtgacccctcctttgagtttcccccaccttttctcttgagcttgca 28238078  T

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