View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4643-Insertion-1 (Length: 897)
Name: NF4643-Insertion-1
Description: NF4643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4643-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 328 - 730
Target Start/End: Original strand, 34901252 - 34901653
Alignment:
| Q |
328 |
acatattccacacaagttttccaaaaagagacacatttatgatcctagcttcacaaataccaaggccctcaaagtgtttcaaggtagtaactgtatgcca |
427 |
Q |
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| T |
34901252 |
acatactccacacaagttttccaaaaagagacacatttatgatcctaacttcacaaataccaaggcccacagagtgtttcaaggtagtaactgtatgcca |
34901351 |
T |
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| Q |
428 |
attaacatggtttcaagtccttgatacctcgtcaccgccccaaagaaaagcttctagctattttgtcaagctggttacacacattagtaggaatatgacg |
527 |
Q |
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| T |
34901352 |
attaacatggtttcaagtccttgataccccgtcaccgccccaaagaaa-gcttctagctattttgtcaagctggttacacacattagtaggaatatgacg |
34901450 |
T |
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| Q |
528 |
agttgctttgtatatactaggatagttgtggtaacatatttcaccaaacaagccctaccagctttatttaacgagttacccttctaagactaatttcttt |
627 |
Q |
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| T |
34901451 |
agttgcattgtatatactaggatagttgtggtaacatatttctccaaacaagccctaccagctttatttaacgagttacccttctaagactaatttcttt |
34901550 |
T |
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| Q |
628 |
tgaactttatccaagatatcattatacacaagaacttatatataacctccaaaattctcatcaatatatttttagttccaaaaaagaatcataaggattt |
727 |
Q |
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| T |
34901551 |
tgaactttatccaagatatcattatacacaagaacttatatataacctccaaaattctcatcaatatatttttagttccaaaaaagaatcatgaggattt |
34901650 |
T |
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| Q |
728 |
tgt |
730 |
Q |
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||| |
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| T |
34901651 |
tgt |
34901653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 792 - 880
Target Start/End: Original strand, 34902133 - 34902222
Alignment:
| Q |
792 |
tcttttcttctccttccttcgaactcgcaaaca-tattttagagaacgttaatcccatgaagttcataattctctttgttataatgtttg |
880 |
Q |
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| T |
34902133 |
tcttttcttctccttccttcgaactcgcaaacaatactttagagaacgttaatcccatgaagttcataattctcttggttataatgtttg |
34902222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 775
Target Start/End: Original strand, 34902082 - 34902111
Alignment:
| Q |
746 |
taactttcaaagctctctacactcaaagtc |
775 |
Q |
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| T |
34902082 |
taactttcaaagctctctacactcaaagtc |
34902111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 30091407 - 30091588
Alignment:
| Q |
21 |
atcgttgccaggatttgtaagtcccaaccaccatccttacacacatcatgtaactttagttatgtatcacttatgttcacaaagggaactaatttacata |
120 |
Q |
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| T |
30091407 |
atcgttgccaagctttggaggtcccaaccaccatcgttacacacatctttcaatttgagctttgtatcact-atgtttacaaaatgtacttgttgacata |
30091505 |
T |
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| Q |
121 |
gagggcttagtttggtccaatactcataccaaaatgaagtttcaccggcacctatacgcaacttatgcccatgggcaaaagaa |
203 |
Q |
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| T |
30091506 |
gagggcctagtttggtccaatactcataccaaaagaaagtttcaccagcccctatatgcaccttataaccaggagcaaaagaa |
30091588 |
T |
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