View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4643-Insertion-2 (Length: 883)

Name: NF4643-Insertion-2
Description: NF4643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4643-Insertion-2
NF4643-Insertion-2
[»] chr1 (11 HSPs)
chr1 (148-682)||(50381359-50381890)
chr1 (290-501)||(37989028-37989239)
chr1 (8-161)||(50381193-50381346)
chr1 (277-432)||(34719130-34719284)
chr1 (565-682)||(37989374-37989490)
chr1 (790-878)||(50382070-50382158)
chr1 (803-863)||(37989683-37989744)
chr1 (685-741)||(37989566-37989622)
chr1 (685-737)||(50381966-50382018)
chr1 (244-325)||(35280785-35280867)
chr1 (515-560)||(34717974-34718019)
[»] chr8 (2 HSPs)
chr8 (287-432)||(34681919-34682064)
chr8 (17-47)||(9548065-9548095)
[»] chr2 (5 HSPs)
chr2 (13-65)||(16564436-16564488)
chr2 (13-65)||(24037582-24037634)
chr2 (13-56)||(944831-944874)
chr2 (16-46)||(1862672-1862702)
chr2 (16-46)||(38935380-38935410)
[»] chr6 (2 HSPs)
chr6 (246-328)||(25067011-25067092)
chr6 (13-66)||(30531238-30531291)
[»] chr5 (1 HSPs)
chr5 (240-298)||(5747915-5747973)
[»] scaffold0097 (1 HSPs)
scaffold0097 (13-72)||(37971-38030)
[»] chr7 (1 HSPs)
chr7 (245-298)||(24307766-24307819)
[»] chr4 (1 HSPs)
chr4 (271-324)||(54117138-54117191)


Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 148 - 682
Target Start/End: Original strand, 50381359 - 50381890
Alignment:
Q  148 atcaaaatcaacaaaagttatggtattccctactcgacttttaattttagacggagagaatattgtgtttgtaacttttactctatactgcaaaactagg 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50381359 atcaaaatcaacaaaagttatggtattccctactcgacttttaattttagacggagagaatattatgtttgtaacttttactctatactgcaaaactagg 50381458  T
Q  248 tggggtttattatgggaatggggagttctttcccttgaagggaaagttgaatcttgatcattgatataatagttttttattccaatggatgtgatctttt 347  Q
    |||| |||| |||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50381459 tgggatttagtatgagaatggggagttcttttccttgatgggaaagttgaatcttgaccattgatataatagttttttattccaatggatgtgatctttt 50381558  T
Q  348 acctgcaacttgctaaaactttttgttggcacatggtataccttttacagcggccccacctgcttattaattaacattatttcatcaaggttatttatga 447  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50381559 acctgcaacttgctaaaacattttgttggcacatggtataccttttacagcgcccccacctgcttattaattaacattatttcatcaaggttatttatga 50381658  T
Q  448 ttctaaccaatgtttataatcatatttgtgttgagaaagatttgcaaaatagtgnnnnnnnnnngtttacaaataattggtaactaactacaacaaaaat 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||           | ||||||||||||||||||||| ||||||||||     
T  50381659 ttctaaccaatgtttataatcatatttgtgttgagaaagatttgcaaaataatgaaaaaaagt--tctacaaataattggtaactaaccacaacaaaaac 50381756  T
Q  548 ttacaattagtgatatggaaaataaatcccttattttgatatataaaatatgggttaataatatttaaaagatcagatcggtgtaagatcataacttcga 647  Q
    || |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50381757 ttgcaattagtgatatgcaaaataaat-ccttattttgatatacaaaatatgggttaataatatttaaaagatcagatcggtgtaagatcataacttcga 50381855  T
Q  648 ttgtgtaacgaataagatcagtgaaagatctgatt 682  Q
    | |||||||||| |||||| |||||||||||||||    
T  50381856 tagtgtaacgaacaagatcggtgaaagatctgatt 50381890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 290 - 501
Target Start/End: Original strand, 37989028 - 37989239
Alignment:
Q  290 aaagttgaatcttgatcattgatataatagttttttattccaatggatgtgatcttttacctgcaacttgctaaaactttttgttggcacatggtatacc 389  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||    
T  37989028 aaagttgaatcttgaccattgatataatagttttttattctaatggatgtgatcttttacatgcaacttgctaaaactttttgctggcagatagtatacc 37989127  T
Q  390 ttttacagcggccccacctgcttattaattaacattatttcatcaaggttatttatgattctaaccaatgtttataatcatatttgtgttgagaaagatt 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||    
T  37989128 ttttacagcggccccacctgcttattaattaacattatttcatcaaggttatttatgattctaaccaatgtttataatcatatctgtgtagagagagatt 37989227  T
Q  490 tgcaaaatagtg 501  Q
    ||||||||||||    
T  37989228 tgcaaaatagtg 37989239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 50381193 - 50381346
Alignment:
Q  8 gtatttaccaaatacatcaacttatgttgactcatttttcgttacatttaaggacggagatagtatgtgctttacatcattttttacgaagcttcaaatg 107  Q
    |||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50381193 gtatttaccaaatacatcaacttatgttgatttatttttccttacatttaaggacggagatagtatgtgctttacatcattttttacgaagcttcaaatg 50381292  T
Q  108 ctttgccaatgttaaatctgaaaaagtgatttaagattttatcaaaatcaacaa 161  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  50381293 ctttgccaatattaaatctgaaaaggtgatttaagattttatcaaaatcaacaa 50381346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 277 - 432
Target Start/End: Complemental strand, 34719284 - 34719130
Alignment:
Q  277 ttcccttgaagggaaagttgaatcttgatcattgatataatagttttttattccaatggatgtgatcttttacctgcaacttgctaaaactttttgttgg 376  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||||||||  |||||||  ||| |||||||| ||||||||||||||||||| |||    
T  34719284 ttcccttgatggaaaagttgaaccttgatcattgatataatagttttttattctgatggatgatatcctttacctgtaacttgctaaaactttttgctgg 34719185  T
Q  377 cacatggtataccttttacagcggccccacctgcttattaattaacattatttcat 432  Q
    ||||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||    
T  34719184 cacat-gtacaccttttacagcggccccacctacttattaattaagattatttcat 34719130  T

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Target: chr1; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 565 - 682
Target Start/End: Original strand, 37989374 - 37989490
Alignment:
Q  565 gaaaataaatcccttattttgatatataaaatatgggttaataatatttaaaagatcagatcggtgtaagatcataacttcgattgtgtaacgaataaga 664  Q
    |||||||||||| |||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  37989374 gaaaataaatcc-ttattttgatgtacaaaatatgggttagtaatatttaaaagattagatcggtgtaagatcataacttcgattgtgtaacgaacaaga 37989472  T
Q  665 tcagtgaaagatctgatt 682  Q
    ||  ||||||||||||||    
T  37989473 tcgatgaaagatctgatt 37989490  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 790 - 878
Target Start/End: Original strand, 50382070 - 50382158
Alignment:
Q  790 ggagagaagggaggatgggaccaa-gcgtgtatattgtttgttttcttctct-aaattaatctgaagtcaagtagtaggtaaaaaggggga 878  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  50382070 ggagagaagg-aggatgggaccaaagcgtgtatattgtttgttttcttctctaaaattaatctgaagtcaagtagta-gtaaaaaggggga 50382158  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 803 - 863
Target Start/End: Original strand, 37989683 - 37989744
Alignment:
Q  803 gatgggaccaagcgtgtatattgtttgttttcttctct-aaattaatctgaagtcaagtagt 863  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37989683 gatgggaccaagcgtgtagattgtttgttttcttctctaaaattaatctgaagtcaagtagt 37989744  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 685 - 741
Target Start/End: Original strand, 37989566 - 37989622
Alignment:
Q  685 agaaggaataatataggttgttgtttgaagatttctctgttaagaaatgaagacggc 741  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  37989566 agaaggaataatatagactgttgtttgaagatttctctgttaagaaatgaagacggc 37989622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 685 - 737
Target Start/End: Original strand, 50381966 - 50382018
Alignment:
Q  685 agaaggaataatataggttgttgtttgaagatttctctgttaagaaatgaaga 737  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50381966 agaaggaataatataggttgttgtttgaagatttctttgttaagaaatgaaga 50382018  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 35280867 - 35280785
Alignment:
Q  244 taggtggggtttattatgggaatggggagttctttcccttgaagggaaagttg-aatcttgatcattgatataatagtttttt 325  Q
    ||||||||||||| |||||||||||  |||| ||| || ||| |||||||||| | | ||  |||||||||||||||||||||    
T  35280867 taggtggggtttagtatgggaatggatagtttttttccatgatgggaaagttgcacttttagtcattgatataatagtttttt 35280785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 560
Target Start/End: Complemental strand, 34718019 - 34717974
Alignment:
Q  515 tacaaataattggtaactaactacaacaaaaatttacaattagtga 560  Q
    ||||| ||||||||||  ||||||||||||||||| ||||||||||    
T  34718019 tacaagtaattggtaaaaaactacaacaaaaatttgcaattagtga 34717974  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 432
Target Start/End: Complemental strand, 34682064 - 34681919
Alignment:
Q  287 gggaaagttgaatcttgatcattgatataatagttttttattccaatggatgtgatcttttacctgcaacttgctaaaactttttgttggcacatggtat 386  Q
    ||||||||| ||| | || |||||||||| |  |||||||||| ||||| | |||||| |||| ||| ||||| |  ||||||||| ||||||||||||     
T  34682064 gggaaagtttaatatggaccattgatatattgattttttattcaaatggttctgatctattacttgctacttgttttaactttttgctggcacatggtac 34681965  T
Q  387 accttttacagcggccccacctgcttattaattaacattatttcat 432  Q
    |||    |||||||||||||||||  ||||| ||  ||||||||||    
T  34681964 accaaaaacagcggccccacctgcagattaaatattattatttcat 34681919  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 9548095 - 9548065
Alignment:
Q  17 aaatacatcaacttatgttgactcatttttc 47  Q
    |||||||||||||||||||||||||||||||    
T  9548095 aaatacatcaacttatgttgactcatttttc 9548065  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 16564436 - 16564488
Alignment:
Q  13 taccaaatacatcaacttatgttgactcatttttcgttacatttaaggacgga 65  Q
    ||||||||||||||||||||||||||||||||||  ||||||||  |||||||    
T  16564436 taccaaatacatcaacttatgttgactcatttttacttacattttgggacgga 16564488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 24037634 - 24037582
Alignment:
Q  13 taccaaatacatcaacttatgttgactcatttttcgttacatttaaggacgga 65  Q
    ||||||||| ||||||||||||||||||||||||  |||||||| ||||||||    
T  24037634 taccaaatatatcaacttatgttgactcatttttgcttacattttaggacgga 24037582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 944831 - 944874
Alignment:
Q  13 taccaaatacatcaacttatgttgactcatttttcgttacattt 56  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||    
T  944831 taccaaatacatcaacttatgttgactaatttttacttacattt 944874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 1862702 - 1862672
Alignment:
Q  16 caaatacatcaacttatgttgactcattttt 46  Q
    |||||||||||||||||||||||||||||||    
T  1862702 caaatacatcaacttatgttgactcattttt 1862672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 38935410 - 38935380
Alignment:
Q  16 caaatacatcaacttatgttgactcattttt 46  Q
    |||||||||||||||||||||||||||||||    
T  38935410 caaatacatcaacttatgttgactcattttt 38935380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 328
Target Start/End: Complemental strand, 25067092 - 25067011
Alignment:
Q  246 ggtggggtttattatgggaatggggagttctttcccttgaagggaaagttgaatcttgatcattgatataatagttttttatt 328  Q
    ||||||||||| |||||||||||| |||| ||| || ||| |||||||||| | ||| | ||||||| |||||||||||||||    
T  25067092 ggtggggtttaatatgggaatgggtagtttttttccatgatgggaaagttgca-cttaaccattgatttaatagttttttatt 25067011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 30531238 - 30531291
Alignment:
Q  13 taccaaatacatcaacttatgttgactcatttttcgttacatttaaggacggag 66  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||  ||||||||    
T  30531238 taccaaatacatcaacttatgttgagtcatttttgcttacattttgggacggag 30531291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 5747915 - 5747973
Alignment:
Q  240 aaactaggtggggtttattatgggaatggggagttctttcccttgaagggaaagttgaa 298  Q
    |||| |||||||||||| |||||||| | ||||||||||||||| | ||||||||||||    
T  5747915 aaacgaggtggggtttagtatgggaaagaggagttctttcccttcatgggaaagttgaa 5747973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 37971 - 38030
Alignment:
Q  13 taccaaatacatcaacttatgttgactcatttttcgttacatttaaggacggagatagta 72  Q
    ||||||||||||||| |||| ||||||| |||||  |||||||| |||||||||| ||||    
T  37971 taccaaatacatcaatttatattgactcgtttttgtttacattttaggacggagagagta 38030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 24307819 - 24307766
Alignment:
Q  245 aggtggggtttattatgggaatggggagttctttcccttgaagggaaagttgaa 298  Q
    |||||| ||||| |||||||| |||||||||||| |||| | ||||||||||||    
T  24307819 aggtggagtttagtatgggaaaggggagttcttttccttcatgggaaagttgaa 24307766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 54117191 - 54117138
Alignment:
Q  271 agttctttcccttgaagggaaagttgaatcttgatcattgatataatagttttt 324  Q
    ||||||||||| ||| ||||||||| || | ||||||||||||||||| |||||    
T  54117191 agttctttcccatgatgggaaagttaaagcatgatcattgatataatacttttt 54117138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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