View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4643-Insertion-3 (Length: 638)

Name: NF4643-Insertion-3
Description: NF4643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4643-Insertion-3
NF4643-Insertion-3
[»] chr1 (8 HSPs)
chr1 (160-638)||(34406604-34407101)
chr1 (360-630)||(34710097-34710363)
chr1 (7-106)||(34407195-34407294)
chr1 (110-472)||(34713506-34713881)
chr1 (118-241)||(34709844-34709967)
chr1 (524-638)||(34713882-34713995)
chr1 (158-227)||(34709767-34709836)
chr1 (522-578)||(40689312-40689368)
[»] scaffold1819 (2 HSPs)
scaffold1819 (459-635)||(766-941)
scaffold1819 (459-637)||(272-443)
[»] scaffold1104 (2 HSPs)
scaffold1104 (459-635)||(2288-2463)
scaffold1104 (459-637)||(1794-1965)
[»] chr4 (1 HSPs)
chr4 (13-72)||(862083-862142)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 160 - 638
Target Start/End: Complemental strand, 34407101 - 34406604
Alignment:
Q  160 tgagaataactttctaacaatgtgtcaggaatcacgatcaaaagtcatccaccacgcgatccacctctgacaagcagagtttggtgttccccatacacta 259  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||    
T  34407101 tgagaataactttctcacaatgtgtgaggaatcacgatcaaaagtcatccaccacacgatccatctctggcaagcagagtttggtgttccccagacacta 34407002  T
Q  260 ttatcacgaaaaatagacttttcaaacacaaagtaaagtaaatat------------------taaaagttaagtggaattgtatgagaataaatttcat 341  Q
    | |||||||||||||||||||||||||||||||||||||| ||||                  |||||||||||||||||||||||||||||||||||||    
T  34407001 tcatcacgaaaaatagacttttcaaacacaaagtaaagtatatatcatgttttacaaccatcttaaaagttaagtggaattgtatgagaataaatttcat 34406902  T
Q  342 atttcgtgtttnnnnnnnttattaattagtttacttttatatctataaattgcaactcctctcttaatccaaa-tccaaatcaacattgaagcatcccat 440  Q
    ||||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||    
T  34406901 atttcgtttttgaaaaaattattaattagtttacttttatatctataaattgcaactcctctcttaatccaaaatccaaatcaacatggaagcatcgcat 34406802  T
Q  441 a--aacatcaattgtctttaggctctagagaacacaccatgaatatcaccaaaggggagataattgaaagggttataaagccaccacaaactcctactcc 538  Q
    |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  34406801 atgaacatcaattatctttaggctctagagaacacaccatgaatatcaccaaagggga--taattgaaagggttataaagccaccacaaactcctactcc 34406704  T
Q  539 tttctccatcactacttattcttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaatctttcac 638  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34406703 tttctccatcactacttattcatctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaatctttcac 34406604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 360 - 630
Target Start/End: Original strand, 34710097 - 34710363
Alignment:
Q  360 ttattaattagtttacttttatatctataaattgcaactcctctcttaatccaaatccaaatcaacattgaagcatcccataaacatcaattgtctttag 459  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||| | |||||||    
T  34710097 ttattaattagtttattcttatctctataaattgcaactcctctcttaatccaaatccaaatcaacatggaagcatctcatgaacaacaactctctttag 34710196  T
Q  460 gctctagagaacacaccatgaatatcaccaaaggggagataattgaaagggttataaagccaccacaaactcctactcctttctccatcactacttattc 559  Q
    ||| |||||||||   ||| ||||||||| ||||| | |||| | ||| ||||||||| ||| | ||| ||||||  |||| |||||  | | |||||||    
T  34710197 gctatagagaaca---catcaatatcaccgaagggaatataactcaaaaggttataaacccatcgcaatctcctaacccttcctccacaagtgcttattc 34710293  T
Q  560 ttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaa 630  Q
    ||||||| ||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||| ||||||    
T  34710294 ttctactagagaaggagaaacaa-gagaaagtgcacgttacaatgtgtatgcatgcaaaacatgcaacaaa 34710363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 34407294 - 34407195
Alignment:
Q  7 acaagtcacatgtgtcttgaaattctcgggataattctatttcgcttgaaataacatttttcttttataatagacacgtctttgattagaacatttatca 106  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34407294 acaagccacatgtgtcttgaaattctcgggataattttatttcgcttgaaataacatttttcttttataatagacacgtctttgattagaacatttatca 34407195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 110 - 472
Target Start/End: Original strand, 34713506 - 34713881
Alignment:
Q  110 tggcaggcgtagtttcgtgttcaccatgcactgtcatcacgaaaaatatttgagaataactttctaacaatgtgtcaggaatcacgatcaaaagtcatcc 209  Q
    |||||| ||| ||||||||| ||||| | ||| |||||| |||||| |||||||| ||||||||||||| |||||| ||||||||||| ||||||||| |    
T  34713506 tggcagacgtggtttcgtgtacaccacgtactctcatcatgaaaaacatttgagagtaactttctaacattgtgtcgggaatcacgattaaaagtcatac 34713605  T
Q  210 accacgcgatccacctctgacaagcagagtttg--gtgttccccatacactattatcacgaaaaa-tagacttttcaaacacaaagtaaagt-------- 298  Q
    |||| |||||||||||| | ||| ||||||||   ||||||  ||  |||||| ||||||||||| || ||||||| ||| |||||||||||            
T  34713606 accatgcgatccacctcaggcaaacagagttttttgtgttcatcacgcactataatcacgaaaaaataaacttttcgaacgcaaagtaaagtggacatca 34713705  T
Q  299 --------aa--atattaaaagttaagtggaattgtatgagaataaatttcatatttcgtgtttnnnnnnnttattaattagtttacttttatatctata 388  Q
            ||  || ||||||||||  |||||||||||||||||||||||||||        |        ||||||||||||||| | | || ||||||    
T  34713706 tgctttacaaccatcttaaaagttatatggaattgtatgagaataaatttcata--------tgaaaaatattattaattagtttattctcatctctata 34713797  T
Q  389 aattgcaactcctctcttaatccaaatccaaatcaacattgaagcatcccataaacatcaattgtctttaggctctagagaaca 472  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||| ||| |||| ||| | || |||||||||||||||||    
T  34713798 aattgcaactcctctcttaatccaaatccaaaacaacatggaagcatctcatgaacaacaactctcattaggctctagagaaca 34713881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 34709844 - 34709967
Alignment:
Q  118 gtagtttcgtgttcaccatgcactgtcatcacgaaaaatatttgagaataactttctaacaatgtgtcaggaatcacgatcaaaagtcatccaccacgcg 217  Q
    ||||||||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |||| |||| ||||||| |    
T  34709844 gtagtttcgtgttcaccacacattgtcatcacgaaaaacatttgagaataactttctaacaatgtgtcggaaatcacgattaaaactcatacaccacgtg 34709943  T
Q  218 atccacctctgacaagcagagttt 241  Q
    ||||||||||| ||||| ||||||    
T  34709944 atccacctctggcaagcggagttt 34709967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 524 - 638
Target Start/End: Original strand, 34713882 - 34713995
Alignment:
Q  524 acaaactcctactcctttctccatcacta---cttattcttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaac 620  Q
    |||| ||||||  ||||||||||||| ||   |||||||||||||   ||||||||||||||| |||||||| | |||||||||||||||||||||||||    
T  34713882 acaatctcctatccctttctccatcaatattgcttattcttctac---agaaggaggaacaag-agaaagtgcacgttacaatgtgtatgcatgcaaaac 34713977  T
Q  621 atgtaacaaatctttcac 638  Q
    ||| || ||| |||||||    
T  34713978 atgcaaaaaaactttcac 34713995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 34709767 - 34709836
Alignment:
Q  158 tttgagaataactttctaacaatgtgtcaggaatcacgatcaaaagtcatccaccacgcgatccacctct 227  Q
    ||||||| ||||||||||||| ||| |||||||| |||||  |||| ||||||||||| |||||||||||    
T  34709767 tttgagagtaactttctaacagtgtatcaggaattacgattgaaagccatccaccacgtgatccacctct 34709836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 578
Target Start/End: Original strand, 40689312 - 40689368
Alignment:
Q  522 ccacaaactcctactcctttctccatcactacttattcttctactggagaaggagga 578  Q
    |||||| ||||||  ||||||||||||||| || ||||||| ||||| |||||||||    
T  40689312 ccacaatctcctatacctttctccatcactgctaattcttcaactggtgaaggagga 40689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1819 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold1819
Description:

Target: scaffold1819; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 459 - 635
Target Start/End: Complemental strand, 941 - 766
Alignment:
Q  459 ggctctagagaacacaccatgaatatcaccaaaggggagataattgaaagggttataaagccaccacaaactcctactcctttctccatcactacttatt 558  Q
    |||||||||||||||||||| ||||   |||||| |||||||||| |||| ||||||||||||| |  | ||||||  |||||||| |||||| || |||    
T  941 ggctctagagaacacaccattaatacggccaaagaggagataattaaaagagttataaagccacaaatatctcctatccctttctctatcactgctaatt 842  T
Q  559 cttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaatcttt 635  Q
    |||||||| |||| | |||||||| | | ||    ||||| ||||||||||||||||||||||||||| ||| ||||    
T  841 cttctactagagaggaaggaacaa-gtggaacaccaggttgcaatgtgtatgcatgcaaaacatgtaaaaaaacttt 766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1819; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 459 - 637
Target Start/End: Original strand, 272 - 443
Alignment:
Q  459 ggctctagagaacacaccatgaatatcaccaaaggggagataattgaaagggttataaagccaccacaaactcctactcctttctccatcactacttatt 558  Q
    ||||||||||||||| |||| |||||  |||| | |||||||||| |||| ||||||||  |||||||| || |||   ||||||| |||||| |  |||    
T  272 ggctctagagaacacgccattaatatggccaaggaggagataattaaaagagttataaaatcaccacaatcttctatctctttctctatcactgccaatt 371  T
Q  559 cttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaatctttca 637  Q
    |||      ||||||||| ||||||  ||||| | ||| | |||||||||||||| |||||||||||||||| ||||||    
T  372 ctt------gagaaggagaaacaagt-gaaagagcaggctgcaatgtgtatgcatccaaaacatgtaacaaaactttca 443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1104 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold1104
Description:

Target: scaffold1104; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 459 - 635
Target Start/End: Complemental strand, 2463 - 2288
Alignment:
Q  459 ggctctagagaacacaccatgaatatcaccaaaggggagataattgaaagggttataaagccaccacaaactcctactcctttctccatcactacttatt 558  Q
    |||||||||||||||||||| ||||   |||||| |||||||||| |||| ||||||||||||| |  | ||||||  |||||||| |||||| || |||    
T  2463 ggctctagagaacacaccattaatacggccaaagaggagataattaaaagagttataaagccacaaatatctcctatccctttctctatcactgctaatt 2364  T
Q  559 cttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaatcttt 635  Q
    |||||||| |||| | |||||||| | | ||    ||||| ||||||||||||||||||||||||||| ||| ||||    
T  2363 cttctactagagaggaaggaacaa-gtggaacaccaggttgcaatgtgtatgcatgcaaaacatgtaaaaaaacttt 2288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1104; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 459 - 637
Target Start/End: Original strand, 1794 - 1965
Alignment:
Q  459 ggctctagagaacacaccatgaatatcaccaaaggggagataattgaaagggttataaagccaccacaaactcctactcctttctccatcactacttatt 558  Q
    ||||||||||||||| |||| |||||  |||| | |||||||||| |||| ||||||||  |||||||| || |||   ||||||| |||||| |  |||    
T  1794 ggctctagagaacacgccattaatatggccaaggaggagataattaaaagagttataaaatcaccacaatcttctatctctttctctatcactgccaatt 1893  T
Q  559 cttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaatctttca 637  Q
    |||      ||||||||| ||||||  ||||| | ||| | |||||||||||||| |||||||||||||||| ||||||    
T  1894 ctt------gagaaggagaaacaagt-gaaagagcaggctgcaatgtgtatgcatccaaaacatgtaacaaaactttca 1965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 862083 - 862142
Alignment:
Q  13 cacatgtgtcttgaaattctcgggataattctatttcgcttgaaataacatttttctttt 72  Q
    |||||||| | |||||| ||||||||| | ||||||||||||||||| |||||| |||||    
T  862083 cacatgtgccgtgaaatactcgggatagtgctatttcgcttgaaatagcattttcctttt 862142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University