View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4643-Insertion-4 (Length: 626)
Name: NF4643-Insertion-4
Description: NF4643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4643-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 423
Target Start/End: Complemental strand, 42453822 - 42453409
Alignment:
| Q |
9 |
gtattccgttgcaatatgagataccattgataatttagtcatgtaagaatgtttctcatgatcattgacgtgctttcaaatgtaaagcatttgtaaagag |
108 |
Q |
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| T |
42453822 |
gtattcctttgcaatatgagataccattgataatttagtcatgtaagaatgtttctcatgatcattgacgtcctttcaaatgtaaagcatttgtaaagag |
42453723 |
T |
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| Q |
109 |
taaactaagcatgtttatttgctatgagctagatggagctaggtacaatttacgatcttcttatgaaaaatcttattagttgtgatgacgagttcataat |
208 |
Q |
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| T |
42453722 |
taaactaaatatgtttatttgctttgagctagatggagctaggtacaatttacgatcttcttatgaaaaatcttattagttgtgatgacgagttcataat |
42453623 |
T |
|
| Q |
209 |
atataagccaacggttaaagacattttgaaactcttaaaattatcacataaataaatgcaatcaaaatgttgaatccattgcatagataaaatccactca |
308 |
Q |
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| T |
42453622 |
atataagccaacggttaaagacattttgaaactcttaaaattatcacataaacaaatgcaatc-aaatgttgaatccattgcatagataaaatccactca |
42453524 |
T |
|
| Q |
309 |
agtaagaaattttttaaagaggataattgttgaataattttttattgcaattgatgttggagcacttaaatctcggttatgtaagaagattgagacattg |
408 |
Q |
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| T |
42453523 |
agtaagaaattttttgaagaggataattgccgaataattttttactgcaattgatattggagcacttaaatctcggttatgtgagaagattgagacattg |
42453424 |
T |
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| Q |
409 |
ttgttggtacgacaa |
423 |
Q |
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| T |
42453423 |
ttgttggtacgacaa |
42453409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 425 - 626
Target Start/End: Complemental strand, 42453266 - 42453065
Alignment:
| Q |
425 |
taatggtctcaattaatcatcaattcaccttaggttatcgctgtctttgtctctcattcccatgtcgtataaaaaagtgctgttcttgttgaaaaatcct |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42453266 |
taatggtctcaattaatcatcaattcaccttaggttatcgctgtttttgtctctcattcccatgtcgtataaaaaagtgctgttcttgtttaaaaatcct |
42453167 |
T |
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| Q |
525 |
tcatatagcattccaattctttggtcattttaattttattatcaattagatatctgtttcaaatattcgcatggttgcacttgaaatcaataaattacat |
624 |
Q |
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| T |
42453166 |
tcatatagcattccaattctttggtcattttaattttattatcaattagatatctgtttcaaatattcgcatggctgcacttgaaatcaataaattacat |
42453067 |
T |
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| Q |
625 |
tg |
626 |
Q |
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|| |
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| T |
42453066 |
tg |
42453065 |
T |
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