View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4643-Insertion-5 (Length: 335)
Name: NF4643-Insertion-5
Description: NF4643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4643-Insertion-5 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 20103752 - 20103424
Alignment:
| Q |
7 |
aagaacttctaaagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcagg |
106 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
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| T |
20103752 |
aagaacttctagataaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcggcactcgtcgcaggcgtctcctttgctacatcagg |
20103653 |
T |
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| Q |
107 |
cagcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttc |
206 |
Q |
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||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20103652 |
cagcgtccccggaggtaatcagaatactggaaaaccaacattcgaaggacagcctgcattcgaagtattctctatatcttcgttaattggactttacttc |
20103553 |
T |
|
| Q |
207 |
tctgccactgcactcatcatgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccaatgaagcttcttattggcttaa |
306 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| || | |
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| T |
20103552 |
tctgccactgcactcatcatgttccttgctttactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccattgaaacttctttttgggttta |
20103453 |
T |
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| Q |
307 |
gttctctcttcatagccattgtcgccatg |
335 |
Q |
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||||||||||| |||||||||| |||||| |
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| T |
20103452 |
gttctctcttcgtagccattgttgccatg |
20103424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 20079435 - 20079107
Alignment:
| Q |
7 |
aagaacttctaaagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcagg |
106 |
Q |
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||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
20079435 |
aagaacttctacaaagcagcattgagtggttgaaagacacatcagagtcatgctcagttgtagcagcactcgtcgcaggcgtctcctttgctacatcagg |
20079336 |
T |
|
| Q |
107 |
cagcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttc |
206 |
Q |
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||| ||||| ||||||||| | |||| ||||||| ||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
20079335 |
cagtgtccctggaggcaatgaccaatcagggaaaccaaatttcgaaggacagcctgcatttgaagtattctcgatatgttcattaattggactttacttc |
20079236 |
T |
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| Q |
207 |
tctgccactgcactcatcatgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccaatgaagcttcttattggcttaa |
306 |
Q |
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|| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||| |
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| T |
20079235 |
tcggtcactgcactaatcatgttcctttctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccattgaaacttctttttgggttaa |
20079136 |
T |
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| Q |
307 |
gttctctcttcatagccattgtcgccatg |
335 |
Q |
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||||||||||| |||||||||| |||||| |
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| T |
20079135 |
gttctctcttcgtagccattgttgccatg |
20079107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 20130972 - 20130647
Alignment:
| Q |
7 |
aagaacttctaaagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcagg |
106 |
Q |
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||||||||||| | || |||| | ||||||| | ||| ||| |||| |||||||||| |||||||||| |||| || || ||||||| || |||| | | |
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| T |
20130972 |
aagaacttctacaaaatagcactcagtggttaatagaaacaacacaatcatgctcagctgtagcagcaatcgttgccggcatctccttcgcaacattaag |
20130873 |
T |
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| Q |
107 |
cagcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttc |
206 |
Q |
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||| ||||||||||||||| || ||||| ||| || ||| |||| ||| ||||||| |||| |||| | |||||||| ||||||||| ||||||| |
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| T |
20130872 |
cagtgtccccggaggcaataaggaaacagggaaatcatcatcagaagaacatactgcattagaaggattcgcaatatcttcattaattggagtttacttt |
20130773 |
T |
|
| Q |
207 |
tctgccactgcactcatcatgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccaatgaagcttcttattggcttaa |
306 |
Q |
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|||| ||||||||||||| |||||||| ||||||||| | |||||||||||||||||| || |||||||||||||| | ||||||||||||||| ||| |
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| T |
20130772 |
tctgtcactgcactcatcttgttcctttctatactcattgatcgaaaacaagtcgaagattttgatagaaacttgccacttaagcttcttattggcctaa |
20130673 |
T |
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| Q |
307 |
gttctctcttcatagccattgtcgcc |
332 |
Q |
| |
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|||| ||||| || ||||||||||| |
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| T |
20130672 |
cttctgtcttcgtatccattgtcgcc |
20130647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 335
Target Start/End: Original strand, 19903647 - 19903958
Alignment:
| Q |
24 |
agcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggcagcgtccccggaggca |
123 |
Q |
| |
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|||||||||||||||||| ||||| || ||||| ||||| |||| |||||||||||||| || |||||||||||||||||| ||| ||||| ||||||| |
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| T |
19903647 |
agcattgagtggttgaaaaacacaacagagtcaagctcaattgtggcagcactcgtcgcaggcgtctcctttgctacatcatgcactgtccctggaggca |
19903746 |
T |
|
| Q |
124 |
atcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttctctgccactgcactcat |
223 |
Q |
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|| | |||| ||||||| || ||||||||||||||||||| ||||||||| || ||| |||| ||||||||||||||||| |||| ||||||| |
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| T |
19903747 |
atgaccaatcagggaaaccaaatttaaaaggacaacctgcatttgatttattctctacatgttcattaactggactttacttctctgtcacttcactcat |
19903846 |
T |
|
| Q |
224 |
catgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccaatgaagcttcttattggcttaagttctctcttcatagcc |
323 |
Q |
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| |||||| |||||||||||| | ||||||||| ||||||| || | ||||||| | ||| || |||| | ||||| || ||||||||||||| |
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| T |
19903847 |
ggtattcctttctatactcacttgtagaaaacaagcaaaagactttggtaatatcttgccatttaagttttttatggtcttaaattttctcttcatagcc |
19903946 |
T |
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| Q |
324 |
attgtcgccatg |
335 |
Q |
| |
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||| | |||||| |
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| T |
19903947 |
atttttgccatg |
19903958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 23279784 - 23279848
Alignment:
| Q |
190 |
taattggactttacttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaa |
254 |
Q |
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||||||| |||| ||||||| |||||||||| | |||||||| | |||||||||||||||||| |
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| T |
23279784 |
taattggtctttgtttctctgtcactgcactcgtaatgttcctgtccatactcacttctcgaaaa |
23279848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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