View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4643-Insertion-6 (Length: 323)
Name: NF4643-Insertion-6
Description: NF4643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4643-Insertion-6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 323
Target Start/End: Original strand, 13979255 - 13979555
Alignment:
| Q |
22 |
cagtaaatctttctctgtggtcttgtcgatgttaacgctcagcaaaacactactcctacgaataaacttgagtttcggtgttgagttactgaatcccata |
121 |
Q |
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| T |
13979255 |
cagtaaatttttctctgtggtcttgtcgatgttaacgctcagcaaaacactactcctacgaataaacttgagtttcagtgttgagttactgaatcccata |
13979354 |
T |
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| Q |
122 |
atatttaccacatctcctagcctataccggtataaccctgaaattatataacggagtacattaatacgataaacgttaacnnnnnnnatcgtaaacattt |
221 |
Q |
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| T |
13979355 |
atatttaccacatctcctagcctataccggtataaccctgaaattatataaccgagtaagttaatacgataaaagttaac-ttttttatcgtaaacattt |
13979453 |
T |
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| Q |
222 |
cccaaagcacattaacataaaggtgtcaaaaaaccaaaagcaaactaaataaacttggtaatagtttagtatttacctgctgaattggtcaaaacaattt |
321 |
Q |
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| T |
13979454 |
cccgaaacacattaacataaaggtgtcaaaaaaccaaaagcaaactaaataaacttggtaatagtttagtatttacctgctgaattggtcagaacaattt |
13979553 |
T |
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| Q |
322 |
ca |
323 |
Q |
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| T |
13979554 |
ca |
13979555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 10241887 - 10241974
Alignment:
| Q |
74 |
ctcctacgaataaacttgagtttcggtgttgagttactgaatcccataatatttaccacatctcctagcctataccggtataaccctg |
161 |
Q |
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| T |
10241887 |
ctcctacgaagaaacttgatttttggagttgagttatggaatcccataacctttaccacatcccctaacctatatctgtataagcctg |
10241974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 48369624 - 48369466
Alignment:
| Q |
8 |
gcttccacaactaacagtaaatctttctctgtggtcttgtcgatgttaacgctcagcaaaacactactcctacgaataaacttgagtttcggtgttgagt |
107 |
Q |
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| T |
48369624 |
gcttccacggctaactgtaaatctttctctgtgttcttgtcaatgtttatgtttagcagaagactactcctacgaataaactttagttctggagttgagt |
48369525 |
T |
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| Q |
108 |
tactgaatcccataatatttaccacatctcctagcctataccggtataaccctgaaatt |
166 |
Q |
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| T |
48369524 |
tatggaatcccataacttttaccacatcccctagcctatacctgtataaacctgaaatt |
48369466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 18045033 - 18045182
Alignment:
| Q |
24 |
gtaaatctttctctgtggtcttgtcgatgttaacgctcagcaaaacactactcctacgaataaacttgagtttcggtgttgagttactgaatcccataat |
123 |
Q |
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||||||| ||||| || ||||||| ||||||| |||| | |||| ||||||||| ||||| ||||||||||| || ||||||||| ||||||||||| |
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| T |
18045033 |
gtaaatccttctcagtattcttgtcaatgttaatgctccgtaaaatactactcctgcgaatgaacttgagttttggagttgagttatggaatcccataac |
18045132 |
T |
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| Q |
124 |
atttaccacatctcctagcctataccggtataaccctgaaattatataac |
173 |
Q |
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| T |
18045133 |
ttttaccacgtcccctagcctatatcggtataaacctaaaattatataac |
18045182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 18045345 - 18045412
Alignment:
| Q |
256 |
caaaagcaaactaaataaacttggtaatagtttagtatttacctgctgaattggtcaaaacaatttca |
323 |
Q |
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| T |
18045345 |
caaaaacaaagtaaatcaatttgataatattctagtacttacctgctgaattggtcacaacaatttca |
18045412 |
T |
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