View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4643-Insertion-7 (Length: 281)
Name: NF4643-Insertion-7
Description: NF4643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4643-Insertion-7 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 2003219 - 2002944
Alignment:
| Q |
5 |
acatgaataacttaaaatagaggaaccaaaactataacaagtagaaaaataaatgatctatacaccttgtggatttctcaaaattcccttgaatttatcg |
104 |
Q |
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| T |
2003219 |
acatgaataacttaaaatagaggaaccaaaactataacaagtagaaaaataaatgatctatacaccttgtggatttctcaaaattcccttgaatttatcg |
2003120 |
T |
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| Q |
105 |
gatcataactctcaatcgtataaaacctatcatgagttacgatccgataaacannnnnnnggatcagaacgcatcttctaaactggcttatttcacaagt |
204 |
Q |
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| T |
2003119 |
gatcataactctcaatcgtataaaacctatcatgagttacgatccgataaaca-ttttttggatcagaacgcatcttctaaaccggcttatttcacaagt |
2003021 |
T |
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| Q |
205 |
taagcgatttatggggcacatataacaattctttacaaaattgttacttttacaggcccagcccaataatcaatcac |
281 |
Q |
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| T |
2003020 |
taagcaatttatgcggcacatataacaattcttaacaaaattgttacttttacaggcccagcccaataatcaatcac |
2002944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 281
Target Start/End: Complemental strand, 2009219 - 2008978
Alignment:
| Q |
40 |
aacaagtagaaaaataaatgatctatacaccttgtggatttctcaaaattcccttgaa-tttatcggatcataactctcaatcgtataaaacctatcatg |
138 |
Q |
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| T |
2009219 |
aacaagtagaaaaaaaaaaaatcaatgcacctcgtggatttttcaaaagtccgttgaaatttatcagaacgtaattctcaattgtataaaatctatcata |
2009120 |
T |
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| Q |
139 |
agttacgatccgataaacannnnnnnggatcagaacgcatcttctaaactggcttatttcacaagttaagcgatttatggggcacatataacaattcttt |
238 |
Q |
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| T |
2009119 |
agttacgatccgatgaacatttttta--atcagaacgcaacttttaaatcggcttattttacgaattaagcaatttatggggcacatataataattctat |
2009022 |
T |
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| Q |
239 |
a--caaaattgttacttttacaggcccagcccaataatcaatcac |
281 |
Q |
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| T |
2009021 |
attaaaaattgttaatttt-caggcccagcccaataatcaatcac |
2008978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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