View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4643_high_3 (Length: 325)
Name: NF4643_high_3
Description: NF4643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4643_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 43476271 - 43476588
Alignment:
| Q |
1 |
acaagatcaaagctagtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaaca |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476271 |
acaagatcaaagctagtttgatggatcggttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaaca |
43476370 |
T |
|
| Q |
101 |
tctactcatgaccaagataagatgacctctatccgcactcttattgttgttgcatatgttcgtcaatggcatatttctcgtaatcatgggagaagtcgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
43476371 |
tctactcatgaccaagataagatgacctctatccacactcttattgttgttgcatatgttcgtcaatggcacatttctcgtaatcatgggagaagtcaaa |
43476470 |
T |
|
| Q |
201 |
ggggaaaaatgtctttctaaataaaccagcgaagatgttcgtcaatagtattctcctaatatagacccctttttaaatgataatcttccgagaaaagttt |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43476471 |
ggggaaaaatgtctttctaaat-aaccagcgaagatgtccgtcaatagtattctcctaatatagacacctttttaaatgataatcttccgagaaaagttt |
43476569 |
T |
|
| Q |
301 |
atatggtaccaacaccaaa |
319 |
Q |
| |
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|||||||||| ||||||| |
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| T |
43476570 |
atatggtacctccaccaaa |
43476588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 47937611 - 47937437
Alignment:
| Q |
1 |
acaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaac |
99 |
Q |
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||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||||| |
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| T |
47937611 |
acaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattcgctcaacagtatggtatggattatgaagaaac |
47937512 |
T |
|
| Q |
100 |
atctactcatgaccaagataagatgacctctatccgcactcttattgttgttgcatatgttcgtcaatggcatatttc |
177 |
Q |
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|| | ||| | | || |||||| |||||||||||||||||| |||||||| | | ||||| ||||||||||| |
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|
| T |
47937511 |
atttgctc---ccgttgcaaaaatgaccactatccgcactcttattgctgttgcatctatacgtcagtggcatatttc |
47937437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 47631114 - 47631013
Alignment:
| Q |
1 |
acaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaac |
99 |
Q |
| |
|
||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| |||| | |||||| ||| ||||||||||||||||||| |
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| T |
47631114 |
acaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattttctcaacagtatggtatggattatgaagaaac |
47631015 |
T |
|
| Q |
100 |
at |
101 |
Q |
| |
|
|| |
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|
| T |
47631014 |
at |
47631013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10052793 - 10052692
Alignment:
| Q |
1 |
acaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaac |
99 |
Q |
| |
|
||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||||| |
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| T |
10052793 |
acaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattcgctcaacagtatggtatggattatgaagaaac |
10052694 |
T |
|
| Q |
100 |
at |
101 |
Q |
| |
|
|| |
|
|
| T |
10052693 |
at |
10052692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 46821073 - 46821174
Alignment:
| Q |
1 |
acaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaac |
99 |
Q |
| |
|
||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||||| |
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| T |
46821073 |
acaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattcactcaacagtatggtatggattatgaagaaac |
46821172 |
T |
|
| Q |
100 |
at |
101 |
Q |
| |
|
|| |
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|
| T |
46821173 |
at |
46821174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 9878727 - 9878643
Alignment:
| Q |
15 |
agtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaac |
99 |
Q |
| |
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|||||||||| || ||||| | |||||||||||||||||||||||| ||| | |||||| ||| || | |||||||||||||| |
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| T |
9878727 |
agtttgatgggtctgttgagcgttacaaagctcgtcttgtggctaaaggatattctcaacaatatggtttagattatgaagaaac |
9878643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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