View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4643_high_4 (Length: 318)
Name: NF4643_high_4
Description: NF4643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4643_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 34082253 - 34082563
Alignment:
| Q |
1 |
tcatggcatgctaaccaaatgagaatttagctttatttgtgtaccattttcaagattagaatttagcttcatttgtgtaggttttcattaacatttttca |
100 |
Q |
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| T |
34082253 |
tcatggcatgctaaccaaatgagaatttagctttatttgtgtaccattttcaagattagaatttagcttcatttgtgtaggttttcattaacatttttca |
34082352 |
T |
|
| Q |
101 |
gccaaatgccaagttaaaagacaacgtcagaaagattgggagcaaggactgcaaagtgagcacattatcttcaatcaaatccttgaccgtaaacttcaac |
200 |
Q |
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| T |
34082353 |
gccaaatgccaagttaaaagacaacgtcagaaaaattgggagcaaggactgcagagtgagcacattatcttcaatcaaatccttgaccgtaaactttaac |
34082452 |
T |
|
| Q |
201 |
atcatggatgtcaacatatggaaattggcaacaaagagggataaactttatctaatcattataccaaaatcaaagatcaccagctcccaccggaatctct |
300 |
Q |
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| T |
34082453 |
atcatggatgtcaacatatggaacttggcaacaaagagggataaactttatctaatcattataccaaaatcaaagatcaccagctcccaccggaatctct |
34082552 |
T |
|
| Q |
301 |
gagaataatct |
311 |
Q |
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||||||||||| |
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| T |
34082553 |
gagaataatct |
34082563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 130 - 311
Target Start/End: Complemental strand, 29796655 - 29796479
Alignment:
| Q |
130 |
gaaagattgggagcaaggactgcaaagtgagcacattatcttcaatcaaatccttgaccgtaaacttcaacatcatggatgtcaacatatggaaattggc |
229 |
Q |
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|||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||| | ||||||||||||||| |||||| |||||| ||||| |
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| T |
29796655 |
gaaaaattgggagcaaggactgcagagagagcacattatcttcaatcaaatctttgaccatgaacttcaacatcatg----tcaaca-atggaacttggc |
29796561 |
T |
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| Q |
230 |
aacaaagagggataaactttatctaatcattataccaaaatcaaagatcaccagctcccaccggaatctctgagaataatct |
311 |
Q |
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| T |
29796560 |
aactaagagggataaactttatccaatcattataccaaaatcaaagatcactagctcctaccggaatctctgagaataatct |
29796479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 29796804 - 29796725
Alignment:
| Q |
28 |
tagctttatttgtgtaccattttcaagattagaatttagcttcatttgtgtaggttttcattaacatttttcagccaaatg |
108 |
Q |
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| T |
29796804 |
tagccttatttgtgtaccattttcaaaattagaatttagcttcatttgtgtagg-ctccattaacattttccagccaaatg |
29796725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 309
Target Start/End: Complemental strand, 28968300 - 28968147
Alignment:
| Q |
157 |
tgagcacattatcttcaatcaaatccttgaccgtaaacttcaacatcatggatgtcaacatat---ggaaattggcaacaaagagggataaactttatct |
253 |
Q |
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|||||| ||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||| ||| ||||||| ||| ||||| |||| |
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| T |
28968300 |
tgagcatattattttcaatcaaatccttgac--ttaacttcaacatcatggatgtcaacatattatggaacctggtaacaaaggggggcaaactctatcc |
28968203 |
T |
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| Q |
254 |
aatcattataccaaaatcaaagatcaccagctcccaccggaatctctgagaataat |
309 |
Q |
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|||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
28968202 |
aatccttataccaaaattaaagatcaccagctcctacctgaatctctgagaataat |
28968147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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