View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4643_high_5 (Length: 312)
Name: NF4643_high_5
Description: NF4643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4643_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 13979257 - 13978963
Alignment:
| Q |
8 |
ctgccaaattattagcagaagaagaattggaagttattgaattcacaagccatgttgatttatctaatgagcctggaaactatgtaatattctgggaaat |
107 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13979257 |
ctgctaaattattagcagaagaggaattggaagttattgaattcacaagccatgttgatttatctaatgagcctggaaactatgtaatattctgggaaat |
13979158 |
T |
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| Q |
108 |
tagtggtgaagcaagtgaagaattgttgagtaaatgttgcaattgtttggataagtctttcactgacccatcctacagtttttcgcgcaaggccaacact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13979157 |
tagtggtgaagcaagtgaagaattgttgagtaaatgttgcaattgtttggataagtctttcactgatccatcctacagtttttcgcgcaaggccaacact |
13979058 |
T |
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| Q |
208 |
attggggccttagaactccgagttgttgggaaaggaacataccaaaagattcttgatcattacttgggattaggaacatctattagtcagtataa |
302 |
Q |
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| T |
13979057 |
attggggccttagaactccgagttgttgggaaaggaacattccaaaagattcttgatcattacttgggattaggaacatctattagtcagtataa |
13978963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 10263735 - 10263672
Alignment:
| Q |
62 |
ttgatttatctaatgagcctggaaactatgtaatattctgggaaattagtggtgaagcaagtga |
125 |
Q |
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| T |
10263735 |
ttgatttatccaatgacccaggacactatgttatcttctgggaaatcagcggtgaagcaagtga |
10263672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 10241619 - 10241557
Alignment:
| Q |
207 |
tattggggccttagaactccgagttgttgggaaaggaacataccaaaagattcttgatcatta |
269 |
Q |
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| T |
10241619 |
tattgcggcccttgaactccgacttgttcggaaaggaacattccagaagattcttgaacatta |
10241557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 10241764 - 10241659
Alignment:
| Q |
62 |
ttgatttatctaatgagcctggaaactatgtaatattctgggaaattagtggtgaagcaagtgaagaattgttgagtaaatgttgcaattgtttggataa |
161 |
Q |
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|||||||||| || || || ||| | ||||| || || |||||||| ||||||||||||||||| ||| || | || ||||||| | ||||||||||| |
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| T |
10241764 |
ttgatttatccaaagaaccaggacattatgttattttttgggaaatcagtggtgaagcaagtgatgaagtgcttggtgaatgttgtacatgtttggataa |
10241665 |
T |
|
| Q |
162 |
gtcttt |
167 |
Q |
| |
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|||||| |
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| T |
10241664 |
gtcttt |
10241659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 10263577 - 10263528
Alignment:
| Q |
220 |
gaactccgagttgttgggaaaggaacataccaaaagattcttgatcatta |
269 |
Q |
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||||||||| ||||| |||||||||||| ||| ||||||||||| ||||| |
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| T |
10263577 |
gaactccgacttgttcggaaaggaacattccagaagattcttgagcatta |
10263528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 10271749 - 10271681
Alignment:
| Q |
220 |
gaactccgagttgttgggaaaggaacataccaaaagattcttgatcattacttgggattaggaacatct |
288 |
Q |
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||||||||| ||||| | |||||||||| ||| ||||||||||| ||||| | ||||||||| ||||| |
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| T |
10271749 |
gaactccgacttgttcgaaaaggaacattccagaagattcttgagcattatgttggattaggagcatct |
10271681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 18045009 - 18044715
Alignment:
| Q |
13 |
aaattattagcagaagaagaattggaagttattgaattcacaagccatgttgatttatctaatgagcctggaaactatgtaatattctgggaaattagtg |
112 |
Q |
| |
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||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||| | | |
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| T |
18045009 |
aaattattagcagaagagaaactggaagtcgttgaattcacaagccatgtcgatttatctaaagagcccgggcactatgtaatattctgggaaatcaacg |
18044910 |
T |
|
| Q |
113 |
gtgaagcaagtgaagaattgttgagta-----aatgttgcaattgtttggataagtctttcactgacccatcctacagtttttcgcgcaaggccaacact |
207 |
Q |
| |
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| |||||||| ||| || |||||| || |||||||||| ||||||||||||||||||| || || |||| | ||| || || ||||||| |
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| T |
18044909 |
gggaagcaagcgaacaagtgttgattatattgaatgttgcaactgtttggataagtctttcatcgatgcaggatacactagttctcgtaaattcaacact |
18044810 |
T |
|
| Q |
208 |
attggggccttagaactccgagttgttgggaaaggaacataccaaaagattcttgatcattacttgggattaggaacatctattagtcagtataa |
302 |
Q |
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|| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18044809 |
atcggggccttagaactccgagttgttaggaaaggaacatttcaaaagattcttgatcattacttgggattaggaacatctgttagtcagtataa |
18044715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 48369632 - 48369921
Alignment:
| Q |
13 |
aaattattagcagaagaagaattggaagttattgaattcacaagccatgttgatttatctaatgagcctggaaactatgtaatattctgggaaattagtg |
112 |
Q |
| |
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|||||||||| |||||| ||||||||||| |||| ||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||| | | |
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| T |
48369632 |
aaattattagtagaagagaaattggaagttgttgagttcacaagccatgttgatttatccaaagagccagggaactatgtaatcttctgggaaatcaacg |
48369731 |
T |
|
| Q |
113 |
gtgaagcaagtgaagaattgttgagtaaatgttgcaattgtttggataagtctttcactgacccatcctacagtttttcgcgcaaggccaacactattgg |
212 |
Q |
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| T |
48369732 |
gggaagcaagtgaagaagtgcttcatgaatgttgcaactgtttggacaagtcttttgtcgatgcaggctacactagttctcgtaaagtcaacgctattgg |
48369831 |
T |
|
| Q |
213 |
ggccttagaactccgagttgttgggaaaggaacataccaaaagattcttgatcattacttgggattaggaacatctattagtcagtataa |
302 |
Q |
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||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||| || ||||||||||||| |
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| T |
48369832 |
agccttagaacttcgagttgttaggaaaggaacatttcaaaagattcttgatcattaccttggattaggaacagctgttagtcagtataa |
48369921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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