View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4643_low_1 (Length: 251)

Name: NF4643_low_1

Description: NF4643

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4643_low_1

[»] chr2 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 121; E-Value: 4e-62

Query Start/End: Original strand, 42 - 197

Target Start/End: Complemental strand, 1189440 - 1189289

Alignment:

Q	42	gaagcataggtccaatgaaaatgtgtgttggtctgatggaatctaaattatagagttttata-atcaccgttatttgtcacaagcaatgattatattgac	140	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	1189440	gaagcacaggtccaatgaaaatgtgtgttggtctgatggaatctaaattatagagttttatagatcaccgttatttgtcacaagcaatgatt-----gac	1189346	T

Q	141	taatactctggagtaaattttgtgaaattttttagttaaaaatgtgattacagtact	197	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1189345	taatactatggagtaaattttgtgaaattttttagttaaaaatgtgattacagtact	1189289	T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 157 - 187

Target Start/End: Original strand, 41762223 - 41762253

Alignment:

Q	157	attttgtgaaattttttagttaaaaatgtga	187	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41762223	attttgtgaaattttttagttaaaaatgtga	41762253	T

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