View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644-Insertion-12 (Length: 469)
Name: NF4644-Insertion-12
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644-Insertion-12 |
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| [»] chr5 (11 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 10 - 469
Target Start/End: Complemental strand, 10101907 - 10101448
Alignment:
| Q |
10 |
actaaagtgttaactgctgctaactaccacttaaagtgaaagatgaacaaggtgatcgatttaaatttctcagagaaaaatatatacagctccccgccag |
109 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10101907 |
actaaagtgttagctgctgctaactaccacttaaagtgaaagatgaacaaggtgatcgatttaactttctcagagaaaaatatatacagctccccgccag |
10101808 |
T |
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| Q |
110 |
aatgcttaagcatacagagtatacaaaatgagccactgccaaacatctcaagactttaaacagtttatccaatcatcagttttcacttaagagtataaaa |
209 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10101807 |
aatgcttaagcatatagagtatacaaaatgagccactgccaaacatctcaagattttaaacagtttatccaatcatcagttttcacttaagagtataaaa |
10101708 |
T |
|
| Q |
210 |
agcaacagtttcaagtggaaggagacaactgatagaatttaaaaacgaggcaaacaattcatgctaaggggaaaagtaatactttaaaaagcatgcaact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
10101707 |
agcaacagtttcaagtggaaggagacaactgatagaatttgaaaacgaggcgaacaattcattctaaggggaaaagcaatactttaaaaagcatgcaact |
10101608 |
T |
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| Q |
310 |
tttaatgaaaaccttcatacaataacatgaatacagtgaatttgacgaaataacgatggcaccatgatgttgttatgctacaaagtgtagcttttgccaa |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10101607 |
tttaatgaaaaccttcatacaataacatgaatacagtgaatttgacgaaataacgatggcaccgtgatgttgttatgctacaaagtgtagcttttgccaa |
10101508 |
T |
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| Q |
410 |
gatcacaatggcttgccgtgattttgcctaattcatcgttgattcaaacacacactaaag |
469 |
Q |
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| T |
10101507 |
gatcacaatggcttgccgtgattttgcctaattcatcgttgattcaaacacacactaaag |
10101448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 273 - 461
Target Start/End: Original strand, 10213950 - 10214140
Alignment:
| Q |
273 |
ctaaggggaaaagtaatactttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaataacgatggcac |
371 |
Q |
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|||||| |||||| |||| ||| ||||||||| |||||||||||||||||||||||| ||||| |||| |||||||||| ||| ||||||| |||||| |
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| T |
10213950 |
ctaaggtgaaaagcaatattttgaaaagcatgtaacttttaatgaaaaccttcatacgataacttgaaccacagtgaattcgacaaaataactgtggcac |
10214049 |
T |
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| Q |
372 |
catgatgttgtt-atgctacaaagtgtagcttttgccaagatcacaatggcttgccgtgattttgcctaattcatcgttgattcaaacaca |
461 |
Q |
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| T |
10214050 |
cgtgatgttgttgatgctacaaagtgtagcttttgccaaaatcacaatggcttgcggtgattttgcctagttcatcgtcgattcaaacaca |
10214140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 13855322 - 13855158
Alignment:
| Q |
55 |
aacaaggtgatcgatttaaatttctcagagaaaaatatatacagctccccgccagaatgcttaagcatacagagtatacaaaatgagccactgccaaaca |
154 |
Q |
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| T |
13855322 |
aacaaggttattgatttaacttttttaacgaaaaatatatacaacgccccgccagaatgcttaagcatacacagtatacaaattgagccactgccaaaca |
13855223 |
T |
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| Q |
155 |
tctcaagactttaaacagtttatccaatcatcagttttcacttaagagtataaaaagcaacagtt |
219 |
Q |
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| T |
13855222 |
tctcaagacttcgaatattttatccaatcatcagatttcagttaagagtataaaaagcaacagtt |
13855158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 106 - 255
Target Start/End: Complemental strand, 10108263 - 10108108
Alignment:
| Q |
106 |
ccagaatgcttaagcatacag-------agtatacaaaatgagccactgccaaacatctcaagactttaaacagtttatccaatcatcagttttcactta |
198 |
Q |
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| T |
10108263 |
ccagaatgcttaagcatacagtatacgaagtatacagactgagccactgccaaacatctcaagatttcaaacattgtatccaatcatcagatttcactt- |
10108165 |
T |
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| Q |
199 |
agagtataaaaagcaacagtttcaagtggaaggagacaactgatagaatttaaaaac |
255 |
Q |
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| T |
10108164 |
agggtataaaaagcaacagctttaggaggaaggagacaactaatagaatttaaaaac |
10108108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 433
Target Start/End: Complemental strand, 10102144 - 10101995
Alignment:
| Q |
286 |
taatactttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaataacgatggcaccatgatgttgtt- |
383 |
Q |
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||||| ||| ||||||||| ||||||||||||||| |||||||| ||||| | ||| || ||||||||| |||||||||| ||| || |||||||||| |
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| T |
10102144 |
taatatttttaaaagcatgtaacttttaatgaaaaacttcatacgataacttaaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttg |
10102045 |
T |
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| Q |
384 |
atgctacaaagtgtagcttttgccaagatcacaatggcttgccgtgattt |
433 |
Q |
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||||||| |||||||||||||||||| |||||||||||| |||||||||| |
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| T |
10102044 |
atgctacgaagtgtagcttttgccaaaatcacaatggctcgccgtgattt |
10101995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 273 - 415
Target Start/End: Original strand, 9661646 - 9661790
Alignment:
| Q |
273 |
ctaaggggaaaagtaatactttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaataacgatggcac |
371 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||| || ||||||||||||||| || | |||||| |
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| T |
9661646 |
ctaaggtgaaaagtaatattttaaaaagcatgcaacttttattgaaaaccttcatacgataacttgaatcacggtgaatttgacgaaacaaaggtggcac |
9661745 |
T |
|
| Q |
372 |
catgatgttgtt-atgctacaaagtgtagcttttgccaagatcac |
415 |
Q |
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| T |
9661746 |
cgtgatgttgttgattctataaagtgtggtttttgccaaaatcac |
9661790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 10211541 - 10211643
Alignment:
| Q |
58 |
aaggtgatcgatttaaatttctcagagaaaaatatatacagctccccgccagaatgcttaagcatacagagtatacaaaatgagccactgccaaacatct |
157 |
Q |
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|||||||||||||||| || ||| ||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |
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| T |
10211541 |
aaggtgatcgatttaaccttttcaaagaaaaatatatacaacgccccgccagaatgcttaagcataccaagtatacaaactgagccactgccaaatatct |
10211640 |
T |
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| Q |
158 |
caa |
160 |
Q |
| |
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||| |
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| T |
10211641 |
caa |
10211643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 9684411 - 9684540
Alignment:
| Q |
58 |
aaggtgatcgatttaaatttctcagagaaaaatatatacagctccccgccagaatgcttaagcatacagagtatacaaaatgagccactgccaaacatct |
157 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||||||||| | |||| ||||| || |||||||||||| | ||||||| |||||||| |||||||||| |
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| T |
9684411 |
aaggtgatcgatttaactttttcaaagaaaaatatatacaacaccccaccagattgtttaagcatacagcgcatacaaactgagccaccaccaaacatct |
9684510 |
T |
|
| Q |
158 |
caagactttaaacagtttatccaatcatca |
187 |
Q |
| |
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|||| ||| |||| |||||| |||||||| |
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| T |
9684511 |
caagtcttcaaacgttttatctaatcatca |
9684540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 448
Target Start/End: Original strand, 12110134 - 12110297
Alignment:
| Q |
286 |
taatactttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaataacgatggcaccatgatgttgtt- |
383 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||| || |||||||| |||||| || | |||||| |||||||||| |
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| T |
12110134 |
taatattttaaaaagcatgcaacttttattgaaaaccttcatacagtaacttgaatcacggtgaatttaacgaaacaaaggtggcactgtgatgttgttg |
12110233 |
T |
|
| Q |
384 |
atgctacaaagtgtagcttttgccaagatcacaatggcttgccgtgattttgcctaattcatcgt |
448 |
Q |
| |
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|| |||||||||| || ||||| ||| ||||| ||||| ||| ||||||||||| ||| |||| |
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| T |
12110234 |
attctacaaagtgaagtttttgtcaaaatcaccttggctccccg-gattttgcctagttcgtcgt |
12110297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 9659844 - 9659893
Alignment:
| Q |
291 |
ctttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaa |
340 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||| |||| |
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| T |
9659844 |
ctttaaaaagcatgcaacttttaatgaaaatcttcatacgataacttgaa |
9659893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 10101963 - 10101927
Alignment:
| Q |
8 |
gcactaaagtgttaactgctgctaactaccacttaaa |
44 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
10101963 |
gcactaaagtgttaactgctgctaactaccacttaaa |
10101927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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