View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644-Insertion-3 (Length: 678)
Name: NF4644-Insertion-3
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Complemental strand, 53414992 - 53414473
Alignment:
| Q |
8 |
tctttgtcaaaatgcatctcaataaatcttcacgaaacccacacaccacactattctcaccatactttttaggatataccctactctatcacccttgcca |
107 |
Q |
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| T |
53414992 |
tctttgtcaaaatgcatctcaataaatcttcacgaaacccacacaccacactattctcaccatactttttaggatataccctactctatcacccttgcca |
53414893 |
T |
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| Q |
108 |
atgatgatcctaactaccgattgatgaacaaggattgtgacata--gttgttggttaatacaatggattggtatgctttctcattgttttctatcaaaac |
205 |
Q |
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| T |
53414892 |
atgatgatcctaactaccgattgatgaacaaggattgtgacatatagttgttggttaatacaatggattggtatgctttctcattgttttctatcaaaac |
53414793 |
T |
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| Q |
206 |
tgagtaacaagagttctacctttgtttatcgaacccagcgacgaggtcattgtcaatatctcccttaacttgaggacggttttgatgaagtgatgctata |
305 |
Q |
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| T |
53414792 |
tgagtaacaagagttctacctttgtttatcgaacccagcgacgaggtcattgtcaatatctcccttaacttgaggacggttttgatgaagtgatgctata |
53414693 |
T |
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| Q |
306 |
gtatgagtcttagaaaaagactcggtaataaaacgcagtatcataatgaaaaacaaaccatcggatgaacgaaacttttagctaagaaacaatacttgtt |
405 |
Q |
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| T |
53414692 |
gtatgagtcttagaaaaagactcggtaataaaaggcagtatcataatgaaaaacaaaccatcggatgaacgaaacttttagctaagaaacaatacctgtt |
53414593 |
T |
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| Q |
406 |
taaaccctttcttttcttgttcgatttagcagtggaagtggacgacggactggaatagaaaatgctgtagaacatggtgggacgcggcgacactgtgaaa |
505 |
Q |
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| T |
53414592 |
taaaccctttcttttcttgttcgatttagcagtggaagtggacgacggactggaatagaaaatgctgtagaacatggtgggacgcggcgacactgtgaaa |
53414493 |
T |
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| Q |
506 |
agacgagttagggttttcaa |
525 |
Q |
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| T |
53414492 |
agatgagttagggttttcaa |
53414473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 542 - 583
Target Start/End: Complemental strand, 53414319 - 53414278
Alignment:
| Q |
542 |
ttccaaaataaattgtcctaataacaattttttatttctgga |
583 |
Q |
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| T |
53414319 |
ttccaaaataaattgtcctaataacaattttttatttctgga |
53414278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 649 - 678
Target Start/End: Complemental strand, 53414214 - 53414185
Alignment:
| Q |
649 |
gaaaacttataattctttctttggctgtaa |
678 |
Q |
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| T |
53414214 |
gaaaacttataattctttctttggctgtaa |
53414185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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