View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4644-Insertion-4 (Length: 666)
Name: NF4644-Insertion-4
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644-Insertion-4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 32861767 - 32861372
Alignment:
| Q |
8 |
aaaacacgccttcaacttaaagtgtccgttgccggtgcaatacataagttataagtgccaagtaatgttctnnnnnnnnnnngtaccaagtcttgaaagc |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| |
|
|
| T |
32861767 |
aaaacacgccttcgacttaaagtgtccgttgccggtgcaatacataagttataagtaccaagtaatgttctaaaaaaaaaaagtaccaagtcatgaaagc |
32861668 |
T |
|
| Q |
108 |
attattacctgaggaatgactccagtttcaacaaggataggtcgataagtcaatctttttctaccatcacaacgaagatcatgagcaatgccaccttcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32861667 |
attattacctgaggaatgactccagtttcaacaaggataggtcgataagtcaatctttttctaccatcacaacgaagatcatgagcaatgccaccttcta |
32861568 |
T |
|
| Q |
208 |
tgaaacattgttctcctaaagataaccctaccattcgtgcagttgcacaagtgtaaacaaactgaaaactaatgtgtgttaactgttaagcatagtaatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32861567 |
tgaaacattgttctcctaaagataaccctaccattcctgcagctgcacaagtgtaaacaaactgaaaactaatgtgtgttaactgttaagcatagtaatc |
32861468 |
T |
|
| Q |
308 |
aaatcaaacctagataatcacgaaataccagtggttcacggaggaagttggcggtgccggaaacagtggcgatatgggaaagaggcggcggcgctt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32861467 |
aaatcaaacctagataatcacgaaataccagtggttcacggaggaagttggcggtgccggaaacagtggcgatatgggaaagaggcggcggcgctt |
32861372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 459 - 620
Target Start/End: Complemental strand, 32861316 - 32861155
Alignment:
| Q |
459 |
tgtgtgattagctgaggtgtggtctacgatgggttaacggtgatgaatggtcgtgatatctttttcaatgtagatttgatcttaatcttttaaattaaag |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32861316 |
tgtgtgattagctgaggtgtggtctacgatgggttaacggtgatgaatggtcgtgatatctttttcaatgtagatttgatcttaatcttttaaattaaag |
32861217 |
T |
|
| Q |
559 |
ttaattattgggataagtggctaggattatttaaaaatttagattgaatccaataactcatt |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32861216 |
ttaattattgggataagtggctaggattatttaaaaatttagattgaatccaataactcatt |
32861155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 11169551 - 11169419
Alignment:
| Q |
111 |
attacctgaggaatgactccagtttcaacaaggataggtcgataagtcaatctttttctaccatcacaacgaagatcatgagcaatgccaccttctatga |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| ||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
11169551 |
attacctgaggaataactccagtttcaacatggattggtcgataagttaatctctttctaccatcacagcgaagatcctgagcaatgccaccttggatga |
11169452 |
T |
|
| Q |
211 |
aacattgttctcctaaagataaccctaccattc |
243 |
Q |
| |
|
|| ||||||||||| |||||| || ||||||| |
|
|
| T |
11169451 |
aatgttgttctcctagagataaacccaccattc |
11169419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University