View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644-Insertion-5 (Length: 639)
Name: NF4644-Insertion-5
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 395 - 639
Target Start/End: Original strand, 8022184 - 8022428
Alignment:
| Q |
395 |
tgttgagtatagcttagttctgattttgtacaagtacaaacttcctaaacttttctcaaccaacttctactatacacaccccaccaccaccaattttgaa |
494 |
Q |
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| T |
8022184 |
tgttgagtatagcttagttctgattttgtacaagtacaaacttcctaaacttttctcaaccaacttctactatacacaccccaccaccaccaattttgaa |
8022283 |
T |
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| Q |
495 |
cctaattaattaagctcaggaatactttgtaaaacaggcttccatagcctatgatggacatcatggttgacatgatctctagcatttaacaaaccaacca |
594 |
Q |
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| T |
8022284 |
cctaattaattaagctcaggaatactttgtaaaacaggcttccatagcctatgatggacatcatggttgacatgatctctagcatttagcaaaccaacca |
8022383 |
T |
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| Q |
595 |
aaacatgttcagcagaagcatgttttgtgcttccaacaccctgtt |
639 |
Q |
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| T |
8022384 |
aaacatgttcagcagaagcatgttttgtgcttccaacaccctgtt |
8022428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 184 - 341
Target Start/End: Original strand, 8021974 - 8022131
Alignment:
| Q |
184 |
gaaggtggcagagttcaaacctattaccacatgcttaaaagatttacaccccttaccactttgacaaaatattgttggtaacttaacctaaattttaacc |
283 |
Q |
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| T |
8021974 |
gaaggtggcagagttcaaacctattaccacatgcttaaaagatttacaccccttaccactttgacaaaatattgttggtaacttaacctaaattttaacc |
8022073 |
T |
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| Q |
284 |
tatatacaatcataaaaatatagaaataacacattctcaacctctatatatatcttac |
341 |
Q |
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| T |
8022074 |
tatatacaatcataaaaatatagaaataacacattctcaacctctatatatatcttac |
8022131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 8021765 - 8021928
Alignment:
| Q |
15 |
cgttgcattcaagttgttccctgcttttctttatccttcaatattttatttattgctcggacatacgttcctcattaataaattcatttagctgttcaaa |
114 |
Q |
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| T |
8021765 |
cgttgcattcaatttgttccctgcttttctttatccttcaatattttatttattgctcggacatacgttcctcattaataaattcatttagctgttcaaa |
8021864 |
T |
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| Q |
115 |
acaattgacaagttatagatacaaagttttagcggtaattaatctaattaagagaacctatgaa |
178 |
Q |
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| T |
8021865 |
acaattgacaagttataaatacaaagttttagcgataattaatctaagtaagagaacctatgaa |
8021928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 20029 - 20094
Alignment:
| Q |
15 |
cgttgcattcaagttgttccctgcttttctttatccttcaatattttatttattgctcggacatac |
80 |
Q |
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| T |
20029 |
cgttgcattctagcagttccctgattttctttatccttgaatattttatttattgctcgaacatac |
20094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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