View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4644-Insertion-7 (Length: 621)
Name: NF4644-Insertion-7
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644-Insertion-7 |
 | |
|
| [»] chr5 (29 HSPs) |
| |
|
| [»] scaffold0627 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 29)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Original strand, 9073773 - 9074384
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9073773 |
caaaatttggaaaagacttatttcagaaccacattttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
9073872 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctctca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9073873 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctctca |
9073972 |
T |
|
| Q |
208 |
gatcatttagggataaaagaagagagatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcggggaaaaacaatgagaacattgatag |
307 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9073973 |
tatcatttagggataaaagaagcgagatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcggggaaaaacaatgagaacattgatag |
9074072 |
T |
|
| Q |
308 |
ggatagaacaaacagttatagttatactgcttgcaacaaatattatgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaacca |
407 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9074073 |
ggatagaacaaaccgttatagttatactgcttgcaacaaatattatgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaacca |
9074172 |
T |
|
| Q |
408 |
actaccggaaaccctttagtgatctgcaacccagtcacacaggggagttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtagg |
507 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9074173 |
actaccggaaacccttcagtgatctgcaacccagt--cacaggggagttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtagg |
9074270 |
T |
|
| Q |
508 |
acaagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtggataagacatggtaaacgtgccaatgaccgtgtgatccttgag |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9074271 |
acaagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtggataagacatggtaaacgtgccaatgaccgtgtgatccttcag |
9074370 |
T |
|
| Q |
608 |
ataaacacacttgg |
621 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9074371 |
ataaacacacttgg |
9074384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 8 - 589
Target Start/End: Complemental strand, 8529996 - 8529429
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
|||| ||||||||| | ||||||||||| ||| |||||||||| ||| ||||||||| ||||| ||||| | |||||||| || | || || |
|
|
| T |
8529996 |
caaagtttggaaaacaattatttcagaatcacaatttgctaaatcgcactttgagcgatcaccaattagtctcatgattcgaacgcgacacc------ga |
8529903 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctctca |
207 |
Q |
| |
|
||||| |||||| |||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8529902 |
gtgtcaagaaccctgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctca |
8529803 |
T |
|
| Q |
208 |
gatcatttagggataaaagaagagagatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcggggaaaaacaatgagaacattgatag |
307 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||| ||| |||||| |||||||||| ||||||||||| ||||||||| | ||||||| |||||| |
|
|
| T |
8529802 |
gatcatttagggataaaagagaccagatcaataatgaatccaagcgcccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagtgatag |
8529703 |
T |
|
| Q |
308 |
ggatagaacaaacagttatagttatactgcttgcaacaaatattatgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaacca |
407 |
Q |
| |
|
|| |||| | ||| | |||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8529702 |
gggtagac---agagtctt---tatattgcttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaccca |
8529609 |
T |
|
| Q |
408 |
actaccggaaaccctttagtgatctgcaacccagtcacacaggggagttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtagg |
507 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| || ||||||||||| ||||||||| ||| |
|
|
| T |
8529608 |
tcttttggaaacccaatagtgatctgcaacccagtcacg--ggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaagg |
8529511 |
T |
|
| Q |
508 |
acaagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtggataagacatggtaaacgtgccaat |
589 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
8529510 |
tcaagctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaat |
8529429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 590
Target Start/End: Original strand, 1599341 - 1599915
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
|||||||||||||| | | ||||||||| ||| ||||||||||| ||| ||||||||| ||||||||||| | |||||||||||| |||| || || |
|
|
| T |
1599341 |
caaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccga |
1599440 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctctca |
207 |
Q |
| |
|
|| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
1599441 |
gtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtgtgaagcttgcgcctatgttcaagcttcctctca |
1599540 |
T |
|
| Q |
208 |
gatcatttagggataaaagaagagagatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcggggaaaaacaatgagaacattgatag |
307 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| ||| |||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
1599541 |
gatcatttagggataaaagtgacgagatcaataatgaatccaagcgcccttttcgtgctgcgagattagtttcggggaaaaaggatgagaacagtgatac |
1599640 |
T |
|
| Q |
308 |
ggatagaacaaacagttatagttatactgcttgcaacaaatattatgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaacca |
407 |
Q |
| |
|
|| ||| ||||| | ||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1599641 |
gggtag-acaaa-----gtctttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgaccca |
1599734 |
T |
|
| Q |
408 |
actaccggaaaccctttagtgatctgcaacccagtcacacaggggagttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtagg |
507 |
Q |
| |
|
| ||||||||| |||||||||||||||||| | ||| |||||||||||||||||||||||| ||||| |||||| |||||||||| ||| | ||| |
|
|
| T |
1599735 |
tatttcggaaacccattagtgatctgcaacccaat--cactggggagttcataagacttcctgaatctaccgcgaatcaaactcgggtaggaaggcaagg |
1599832 |
T |
|
| Q |
508 |
acaagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtggataagacatggtaaacgtgccaatg |
590 |
Q |
| |
|
|| || || |||||| ||||||||||| ||||||||||||||||| |||| ||| || | ||| ||| |||||||||||||| |
|
|
| T |
1599833 |
acgagctgcttttggtttccaacctaaaactaatgaatataaggtgataaacatgagggtgagatatgttaaacgtgccaatg |
1599915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 590
Target Start/End: Complemental strand, 8536566 - 8535992
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
|||||||||||||| | | ||||||||| ||| ||||||||||| || ||||||| | ||||||| ||| | |||||||||||| |||| ||| || |
|
|
| T |
8536566 |
caaaatttggaaaacattgatttcagaatcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccga |
8536467 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctctca |
207 |
Q |
| |
|
|| || ||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||| | ||||| || |||| |||||| |||||||||||||||| |
|
|
| T |
8536466 |
gtttcaagaacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacgatcatgtgaaacttgtgcctatgttcaagcttcctctca |
8536367 |
T |
|
| Q |
208 |
gatcatttagggataaaagaagagagatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcggggaaaaacaatgagaacattgatag |
307 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||| ||| || ||| |||||||||| ||||||||||| ||||||||| | ||||||| | ||| |
|
|
| T |
8536366 |
gatcatttagggataaaagagaccagatcaataatgaatccaagcgaccttttcgtgctgcgagattagtttcagggaaaaacgacgagaacagttatac |
8536267 |
T |
|
| Q |
308 |
ggatagaacaaacagttatagttatactgcttgcaacaaatattatgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaacca |
407 |
Q |
| |
|
|| |||| |||| || |||| ||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8536266 |
gggtaga-caaagtctt-----tatattgcttgcaaaagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaccca |
8536173 |
T |
|
| Q |
408 |
actaccggaaaccctttagtgatctgcaacccagtcacacaggggagttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtagg |
507 |
Q |
| |
|
|| |||||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||| ||| || ||| || ||||||||||| | |||| |
|
|
| T |
8536172 |
tcttttggaaacccattagtgatctgcaacccagt--cactggggagtttataagacttcctgaatctattgcggatcaaaatcgggtaagaaggctagg |
8536075 |
T |
|
| Q |
508 |
acaagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtggataagacatggtaaacgtgccaatg |
590 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||||||||||||||| |||| |||||| | ||||||| |||||||||||||| |
|
|
| T |
8536074 |
acaagctggttttggtttccaacctaaaactaatgaatataaggtgataaacatgtgggtgagacatgttaaacgtgccaatg |
8535992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 2844131 - 2844328
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
|||||||||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| | | ||| |||| || |
|
|
| T |
2844131 |
caaaatttggaatacacttatatcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatatagga |
2844230 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctct |
205 |
Q |
| |
|
||||| |||| | | |||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
2844231 |
gtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttgaccctatattcgagcttcctct |
2844328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 2855964 - 2856161
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
|||||||||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| | | ||| |||| || |
|
|
| T |
2855964 |
caaaatttggaatacacttatatcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatatagga |
2856063 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctct |
205 |
Q |
| |
|
||||| |||| | | |||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
2856064 |
gtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttgaccctatattcgagcttcctct |
2856161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 2873577 - 2873774
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| | | ||| |||| || |
|
|
| T |
2873577 |
caaaacttggaatacacttatttcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatatagga |
2873676 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctct |
205 |
Q |
| |
|
||||| |||| | | |||||||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
2873677 |
gtgtcaagaaacctataccttcttgagtgcgaagctgaaaagtttgagattggaagcaacaatcatgtgaagcttgaccctatattcgagcttcctct |
2873774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 8637946 - 8637753
Alignment:
| Q |
12 |
atttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattagagtgt |
111 |
Q |
| |
|
|||||||||| | | ||||| ||||||| ||||||||||||||||||||||||||| || |||||| | ||||||||||| ||| | || ||||| |
|
|
| T |
8637946 |
atttggaaaacaatgatttcggaaccacattttgctaaattgcaatttgagcgagcgccccttagtctcatgattcggacaaatgatggtagactagtgt |
8637847 |
T |
|
| Q |
112 |
cgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctct |
205 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
8637846 |
caagaaccatgtaccttcttgagtgtgatcatgaaaagtttgagattggaagcaacaatcatgtgaagcttgcgcctatatttaagcttcctct |
8637753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 329 - 482
Target Start/End: Original strand, 8547439 - 8547590
Alignment:
| Q |
329 |
ttatactgcttgcaacaaatattatgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaaccctttagtg |
428 |
Q |
| |
|
||||| ||||||||||| | || |||| | |||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8547439 |
ttatattgcttgcaacagagatcgtgatcattttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtg |
8547538 |
T |
|
| Q |
429 |
atctgcaacccagtcacacaggggagttcataagacttcctgaagctaccacga |
482 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
8547539 |
atctgcaatccaat--cacaggggagttcataagacttcttgaagctactacga |
8547590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 8547182 - 8547375
Alignment:
| Q |
12 |
atttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattagagtgt |
111 |
Q |
| |
|
|||||||||| | |||||||||||| || ||||||||||||||| |||||| || ||| | || || | |||||| |||| |||||||| ||||| |
|
|
| T |
8547182 |
atttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgatagactagtgt |
8547281 |
T |
|
| Q |
112 |
cgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctct |
205 |
Q |
| |
|
| ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
8547282 |
caagaaccatgtaccatcttgagtgtgagcctgaaaagttcaagattggaagcaacaatcatgtgaagcttgatcctatattcaagcttcctct |
8547375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 8645291 - 8645098
Alignment:
| Q |
12 |
atttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattagagtgt |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||| | ||||||||| ||| | || || | |||||||||| |||| || ||||| |
|
|
| T |
8645291 |
atttggaaaacacttatttcagaaccacattttgctaaattgaactttgagcgatcacaagtttgtctcatgattcggatagatgactgtagactagtgt |
8645192 |
T |
|
| Q |
112 |
cgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctct |
205 |
Q |
| |
|
| ||||| |||||||||||||||||||| |||||||||||| | ||||||||||||| | ||||||||||| |||||||| ||||||||||| |
|
|
| T |
8645191 |
caagaactatgtaccttcttgagtgtgatcctgaaaagtttcaaattggaagcaacagtcgtgtcaagcttgcacctatatttaagcttcctct |
8645098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 2904083 - 2904280
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
|||||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||| | ||||| |||||| | | | || |||| | |
|
|
| T |
2904083 |
caaaatttggaatacacttatttcagaacctaaattcgctaaattgcaatttgagcgagcaccaatcagtttcatgattagaaaattagataatatagaa |
2904182 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctct |
205 |
Q |
| |
|
||||| |||| | | |||||||||||||| ||||||||| |||| ||| |||||| |||||| | ||| |||||| ||||||||||| | |||||||| |
|
|
| T |
2904183 |
gtgtcaagaaacctataccttcttgagtgcgaacctgaatagttcgagtttggaaccaacaatcttgtgaagcttaagcctatattcgaacttcctct |
2904280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 9004432 - 9004353
Alignment:
| Q |
12 |
atttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggac |
91 |
Q |
| |
|
|||||||||| | |||||||| |||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
9004432 |
atttggaaaacaattatttcataaccacattttgctaaattgcaatttgagcgagcaccaattagtctcatgattcggac |
9004353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 2844435 - 2844520
Alignment:
| Q |
357 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaacccagt |
442 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| |||||| || ||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
2844435 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagt |
2844520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 2856268 - 2856353
Alignment:
| Q |
357 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaacccagt |
442 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| |||||| || ||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
2856268 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagt |
2856353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 2873878 - 2873963
Alignment:
| Q |
357 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaacccagt |
442 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| |||||| || ||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
2873878 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagt |
2873963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 2904384 - 2904469
Alignment:
| Q |
357 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaacccagt |
442 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| |||||| || ||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
2904384 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctaccggaagccctttagcgatttgcaacccagt |
2904469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 505 - 561
Target Start/End: Complemental strand, 8637449 - 8637393
Alignment:
| Q |
505 |
aggacaagttggttttggattccaacctaatactaatgaatataaggtaataagaat |
561 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
8637449 |
aggacaagttggttttggtttccaacctaaaactaatgaatataaggtgataagaat |
8637393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 8678799 - 8678721
Alignment:
| Q |
12 |
atttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcgga |
90 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||| | ||||||||| ||| | || || | |||||||||| |
|
|
| T |
8678799 |
atttggaaaacacttatttcagaaccacattttgctaaattgaactttgagcgatcacaagtttgtctcatgattcgga |
8678721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 347 - 398
Target Start/End: Complemental strand, 8644962 - 8644911
Alignment:
| Q |
347 |
atattatgataagtttgatattgtgaattcttgcaatggtttactttgtttg |
398 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| || ||||||||| |
|
|
| T |
8644962 |
atattatgataagtttggtgttgtgaattcttgcaatggcttgctttgtttg |
8644911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 519 - 566
Target Start/End: Original strand, 11354043 - 11354090
Alignment:
| Q |
519 |
ttggattccaacctaatactaatgaatataaggtaataagaatgtgga |
566 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
11354043 |
ttggcttccaacctaaaactaatgaatataaggtgataagaatgtgga |
11354090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 519 - 566
Target Start/End: Complemental strand, 11373350 - 11373303
Alignment:
| Q |
519 |
ttggattccaacctaatactaatgaatataaggtaataagaatgtgga |
566 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
11373350 |
ttggcttccaacctaaaactaatgaatataaggtgataagaatgtgga |
11373303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 566
Target Start/End: Complemental strand, 8678401 - 8678339
Alignment:
| Q |
504 |
taggacaagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtgga |
566 |
Q |
| |
|
||||||||||||| || || ||||||||||| ||||||||||| ||||| |||||||| |||| |
|
|
| T |
8678401 |
taggacaagttggcttaggtttccaacctaaaactaatgaatacaaggtgataagaatatgga |
8678339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 566
Target Start/End: Original strand, 2904537 - 2904594
Alignment:
| Q |
509 |
caagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtgga |
566 |
Q |
| |
|
|||| ||||||||| |||||||| || ||||||||||||||||| |||| |||||||| |
|
|
| T |
2904537 |
caagctggttttggtttccaacccaaaactaatgaatataaggtgataataatgtgga |
2904594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 479
Target Start/End: Complemental strand, 8637617 - 8637487
Alignment:
| Q |
347 |
atattatgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaacccagtcaca |
446 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||| || |||||||||| | ||| || || | |||||||| ||| |||||||| || || |
|
|
| T |
8637617 |
atattatgataagtttggtgttgcgaattcttgcaatggcttgctttgtttgtgttgcccatctgacgaacaccctttatcgatttgcaacccggt--ca |
8637520 |
T |
|
| Q |
447 |
caggggagttcataagacttcctgaagctacca |
479 |
Q |
| |
|
| |||||||| || | ||||||||||||||||| |
|
|
| T |
8637519 |
ctggggagtttattaaacttcctgaagctacca |
8637487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 566
Target Start/End: Original strand, 2844593 - 2844651
Alignment:
| Q |
508 |
acaagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtgga |
566 |
Q |
| |
|
||||| ||||||||| |||||||| || ||||||||||||||||| || | |||||||| |
|
|
| T |
2844593 |
acaagctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtgga |
2844651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 566
Target Start/End: Original strand, 2856420 - 2856478
Alignment:
| Q |
508 |
acaagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtgga |
566 |
Q |
| |
|
||||| ||||||||| |||||||| || ||||||||||||||||| || | |||||||| |
|
|
| T |
2856420 |
acaagctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtgga |
2856478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 621
Target Start/End: Complemental strand, 8529413 - 8529385
Alignment:
| Q |
593 |
cgtgtgatccttgagataaacacacttgg |
621 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8529413 |
cgtgtgatccttgagataaacacacttgg |
8529385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 621
Target Start/End: Complemental strand, 8641856 - 8641828
Alignment:
| Q |
593 |
cgtgtgatccttgagataaacacacttgg |
621 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8641856 |
cgtgtgatccttgagataaacacacttgg |
8641828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 590
Target Start/End: Original strand, 48360894 - 48361467
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||| |||||||||| ||| ||||||||| ||||||||||| | |||||||||||||| ||| ||| || |
|
|
| T |
48360894 |
caaaatttggaaaacactgatttcagaatcacaatttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccct-gactatagagga |
48360992 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctctca |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
48360993 |
gtgtcaagaaccatgtaccttcttgagtgtgatcctgaaaagtttgagattggaagcaacaaccatgtgaagcttacacctatattcaagcttcctctca |
48361092 |
T |
|
| Q |
208 |
gatcatttagggataaaagaagagagatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcggggaaaaacaatgagaacattgatag |
307 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||||| ||| | |||| ||||||||||||||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
48361093 |
gatcatttagggataaaagagacgatatcaataatgaatccaagcacccttttcgtgctgcaagattagtttcgggaaaaaatgatgagaacagtgatag |
48361192 |
T |
|
| Q |
308 |
ggatagaacaaacagttatagttatactgcttgcaacaaatattatgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaacca |
407 |
Q |
| |
|
|| ||| ||||| | ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48361193 |
gggtag-acaaa-----gtctttatattgcttgcaacagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgatcca |
48361286 |
T |
|
| Q |
408 |
actaccggaaaccctttagtgatctgcaacccagtcacacaggggagttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtagg |
507 |
Q |
| |
|
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| || |||||||||||||||||||| ||| |
|
|
| T |
48361287 |
tctttgggaaacccgttagtgatctgcaacccagt--cacaggggagttcataagacttcctgaatctactgcgtatcgaactcgggtaagaatgcaagg |
48361384 |
T |
|
| Q |
508 |
acaagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtggataagacatggtaaacgtgccaatg |
590 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||||||||||||||| |||| |||||| | ||||||| |||||||||||||| |
|
|
| T |
48361385 |
acaagctggttttggtttccaacctaaaactaatgaatataaggtgataaacatgtgggtgagacatgttaaacgtgccaatg |
48361467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 364 - 591
Target Start/End: Complemental strand, 35780544 - 35780303
Alignment:
| Q |
364 |
atattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaa-ccctttagtgatctgcaacccagtcacacaggggagttcataag |
462 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| | ||| ||||| ||| |||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
35780544 |
atattgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacg--ggggagttcataag |
35780447 |
T |
|
| Q |
463 |
acttcctgaagctaccacgaatc------ga------ac---tcgggtaagaatggtaggacaagttggttttggattccaacctaatactaatgaatat |
547 |
Q |
| |
|
||||||||||||||| |||| || || || ||| ||||||||| |||||||| ||||||||| ||||||||||| |||||||||||| |
|
|
| T |
35780446 |
acttcctgaagctactacgactcctttaagattaaatacggatcgagtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaatat |
35780347 |
T |
|
| Q |
548 |
aaggtaataagaatgtggataagacatggtaaacgtgccaatga |
591 |
Q |
| |
|
||||| |||| ||| ||||||||||||| | ||||||||||||| |
|
|
| T |
35780346 |
aaggtgataaaaatatggataagacatgttcaacgtgccaatga |
35780303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 35780806 - 35780709
Alignment:
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctct |
205 |
Q |
| |
|
||||| |||||| || |||||||||||||||| ||||||||||||||| ||||||| ||||| | ||| |||||||| || ||||| ||||||||||| |
|
|
| T |
35780806 |
gtgtcaagaaccctgcaccttcttgagtgtgagcctgaaaagtttgagtttggaaggaacaatcttgtgaagcttgaccccatatttaagcttcctct |
35780709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 621
Target Start/End: Original strand, 48361482 - 48361510
Alignment:
| Q |
593 |
cgtgtgatccttgagataaacacacttgg |
621 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48361482 |
cgtgtgatccttgagataaacacacttgg |
48361510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 581
Target Start/End: Complemental strand, 9444157 - 9443598
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
|||| ||||||||| | | ||||||||| ||| |||||||||||||| ||||||||| ||||| ||||| | |||||||| || |||| | || |
|
|
| T |
9444157 |
caaagtttggaaaacaatgatttcagaatcacaatttgctaaattgcactttgagcgatcaccaattagtctcatgattcgaac-----acgacacc-ga |
9444064 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctctca |
207 |
Q |
| |
|
||||| |||||| | |||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9444063 |
gtgtcaagaaccctataccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctca |
9443964 |
T |
|
| Q |
208 |
gatcatttagggataaaagaagagagatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcggggaaaaacaatgagaacattgatag |
307 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||| ||| |||||| |||||||||| ||||||||||| ||||||||||| || |||| |||||| |
|
|
| T |
9443963 |
gatcatttagggataaaagagaccagatcaatattgaatccaagcgcccttttcgtgctgccagattagtttcagggaaaaacaacgacaacagtgatag |
9443864 |
T |
|
| Q |
308 |
ggatagaacaaacagttatagttatactgcttgcaacaaatattatgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaacca |
407 |
Q |
| |
|
|| |||| | ||| | |||| || |||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9443863 |
gggtagac---agagtctt---tatattgattgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaccca |
9443770 |
T |
|
| Q |
408 |
actaccggaaaccctttagtgatctgcaacccagtcacacaggggagttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtagg |
507 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| || ||||||||||| ||||||||| ||| |
|
|
| T |
9443769 |
tcttttggaaacccaatagtgatctgcaacccagtcacg--ggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaagg |
9443672 |
T |
|
| Q |
508 |
acaagttggttttggattccaacctaatactaatgaatataaggtaataagaatgtggataagacatggtaaac |
581 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
9443671 |
tcaagctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaac |
9443598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 621
Target Start/End: Complemental strand, 9443574 - 9443546
Alignment:
| Q |
593 |
cgtgtgatccttgagataaacacacttgg |
621 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9443574 |
cgtgtgatccttgagataaacacacttgg |
9443546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 5680 - 5483
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
||||||||||||| | | ||||||||||||| |||||||||||| || ||||||||| |||| ||||| | |||||||| || || ||| || |
|
|
| T |
5680 |
caaaatttggaaagcaatgatttcagaaccacattttgctaaattacactttgagcgatcaccgattagtctcatgattcgaacaagatactatagacga |
5581 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctct |
205 |
Q |
| |
|
||||| |||||| | ||||||||||| || || ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
5580 |
gtgtcaagaaccctataccttcttgaatgcgatcctaaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttactct |
5483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 365 - 476
Target Start/End: Complemental strand, 5398 - 5289
Alignment:
| Q |
365 |
tattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaacccagtcacacaggggagttcataagac |
464 |
Q |
| |
|
|||||||||||| || ||||| || || ||||||||| |||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
5398 |
tattgtgaattcctgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccatt--catgggggagttcataagac |
5301 |
T |
|
| Q |
465 |
ttcctgaagcta |
476 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5300 |
ttcctgaagcta |
5289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 353 - 477
Target Start/End: Complemental strand, 16717108 - 16716986
Alignment:
| Q |
353 |
tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaacccagtcacacagggg |
452 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||| || || |||||||||||||||||||| ||||||||| ||||||||||||||||| | || |||| |
|
|
| T |
16717108 |
tgataagtttaatattgtgaattcatgtaatggcttgctatgtttgtctgaaccaactactggaaaccctatagtgatctgcaacccatt--catggggg |
16717011 |
T |
|
| Q |
453 |
agttcataagacttcctgaagctac |
477 |
Q |
| |
|
| |||||||||||||||||| |||| |
|
|
| T |
16717010 |
aattcataagacttcctgaaactac |
16716986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 16717393 - 16717196
Alignment:
| Q |
8 |
caaaatttggaaaagacttatttcagaaccacgttttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattaga |
107 |
Q |
| |
|
|||||||||||||||| | ||||||||| | | |||||||||||| || ||||||| | ||||| ||||| | |||||||| || || ||| || |
|
|
| T |
16717393 |
caaaatttggaaaagaatgatttcagaatcgcattttgctaaattacactttgagcaatcaccaattagtctcatgattcgaacaagatactataaacga |
16717294 |
T |
|
| Q |
108 |
gtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctct |
205 |
Q |
| |
|
||||| |||||| | |||||||| ||||| || || |||||||||||||||||||||||||| ||||| || |||||||||||||||| |||||||| |
|
|
| T |
16717293 |
gtgtcaagaaccctctaccttctagagtgcgatccagaaaagtttgagattggaagcaacaatcatgtgaatcttgagcctatattcagacttcctct |
16717196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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