View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644-Insertion-8 (Length: 579)
Name: NF4644-Insertion-8
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 139 - 310
Target Start/End: Complemental strand, 40406447 - 40406276
Alignment:
| Q |
139 |
attcaaccttaaccaagtactttccacaccccacatctctgaataccactccctcctctccttcaaatcctccataacaaacgacctacaaaacatcctc |
238 |
Q |
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| T |
40406447 |
attcaaccttaaccaagtactttccacaccccacatctctgaataccactccctcctctccttcaaatcctccataacaaacgacccacaaaacatcctc |
40406348 |
T |
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| Q |
239 |
acctcatggaacccaaaaaccccttactgttcctggtacggcatcaaatgttcccaacatcgccacgtcatt |
310 |
Q |
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| T |
40406347 |
acctcatggaacccaaaaaccccttactgttcctggtacggcattaaatgttcccaacatcgccacgtcatt |
40406276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 463 - 579
Target Start/End: Complemental strand, 40406123 - 40406007
Alignment:
| Q |
463 |
caacaacatgttcaatggcaccctccctcaagaactctctaacctcttcaatcttcaagttcttgacctctacaacaacaacatgaccggttcacttcct |
562 |
Q |
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| T |
40406123 |
caacaacatcttcaatggcaccctccctcaagaactctctaacctcttcaatcttcaagttcttgacctctacaacaacaacatgaccggttcacttcct |
40406024 |
T |
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| Q |
563 |
gtttcggtcacccatct |
579 |
Q |
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| T |
40406023 |
gtttcggtcacccatct |
40406007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 40406550 - 40406510
Alignment:
| Q |
36 |
caatacttacttattccttcactctcactttcactcattca |
76 |
Q |
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| T |
40406550 |
caatacttacttattccttcactctcactttcactcattca |
40406510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 417
Target Start/End: Complemental strand, 40406197 - 40406169
Alignment:
| Q |
389 |
gccgacaacaaattctccggcccaatacc |
417 |
Q |
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| T |
40406197 |
gccgacaacaaattctccggcccaatacc |
40406169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 552
Target Start/End: Original strand, 4977241 - 4977274
Alignment:
| Q |
519 |
aagttcttgacctctacaacaacaacatgaccgg |
552 |
Q |
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| T |
4977241 |
aagttcttgatctctacaacaacaacatgaccgg |
4977274 |
T |
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