View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4644-Insertion-9 (Length: 542)

Name: NF4644-Insertion-9
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4644-Insertion-9
NF4644-Insertion-9
[»] chr1 (10 HSPs)
chr1 (7-523)||(42818953-42819466)
chr1 (333-375)||(17468320-17468362)
chr1 (333-375)||(52961558-52961600)
chr1 (340-376)||(7652301-7652337)
chr1 (335-374)||(33156947-33156986)
chr1 (333-375)||(7826097-7826139)
chr1 (333-375)||(20208592-20208634)
chr1 (333-375)||(25713369-25713411)
chr1 (333-375)||(26173522-26173564)
chr1 (333-375)||(35772240-35772282)
[»] chr2 (5 HSPs)
chr2 (232-316)||(4239789-4239872)
chr2 (333-376)||(10523229-10523272)
chr2 (48-106)||(4239665-4239723)
chr2 (343-376)||(25082602-25082635)
chr2 (333-375)||(16419478-16419520)
[»] chr8 (9 HSPs)
chr8 (335-375)||(34236714-34236754)
chr8 (333-375)||(29907792-29907834)
chr8 (326-375)||(38447493-38447542)
chr8 (328-375)||(422283-422330)
chr8 (333-436)||(24532426-24532529)
chr8 (333-375)||(5590434-5590476)
chr8 (326-375)||(8466554-8466603)
chr8 (333-373)||(5940034-5940074)
chr8 (343-375)||(28213169-28213201)
[»] chr6 (9 HSPs)
chr6 (335-375)||(6543009-6543049)
chr6 (345-405)||(6054157-6054217)
chr6 (333-375)||(3680222-3680264)
chr6 (333-375)||(8567024-8567066)
chr6 (333-375)||(12199871-12199913)
chr6 (333-375)||(12330356-12330398)
chr6 (323-369)||(19648305-19648351)
chr6 (331-436)||(19639118-19639223)
chr6 (335-375)||(4906784-4906824)
[»] chr5 (4 HSPs)
chr5 (331-375)||(18333531-18333575)
chr5 (333-375)||(1564633-1564675)
chr5 (333-375)||(15480298-15480340)
chr5 (343-375)||(18885447-18885479)
[»] chr3 (5 HSPs)
chr3 (340-375)||(46794037-46794072)
chr3 (333-375)||(45138868-45138910)
chr3 (333-430)||(38791461-38791558)
chr3 (333-375)||(22729076-22729118)
chr3 (333-375)||(34992526-34992568)
[»] chr7 (7 HSPs)
chr7 (333-375)||(32879681-32879723)
chr7 (331-385)||(14540797-14540851)
chr7 (333-375)||(32278951-32278993)
chr7 (344-385)||(10221658-10221699)
chr7 (326-375)||(23796250-23796299)
chr7 (340-376)||(28080648-28080684)
chr7 (340-376)||(36993139-36993175)
[»] chr4 (5 HSPs)
chr4 (333-375)||(44118925-44118967)
chr4 (331-373)||(42662437-42662479)
chr4 (340-374)||(44249096-44249130)
chr4 (333-374)||(28208401-28208442)
chr4 (343-375)||(400631-400663)
[»] scaffold0766 (1 HSPs)
scaffold0766 (333-375)||(6250-6292)
[»] scaffold0692 (1 HSPs)
scaffold0692 (333-375)||(5820-5862)
[»] scaffold0129 (2 HSPs)
scaffold0129 (333-375)||(14514-14556)
scaffold0129 (334-375)||(14280-14321)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 7 - 523
Target Start/End: Original strand, 42818953 - 42819466
Alignment:
Q  7 atatttgttctgttattctgtttgagtagcacatactcctgaacatgcatttctatttctagggccttattgcactaacttaaactacactagtttcctt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  42818953 atatttgttctgttattctgtttgagtagcacatactcctgaacatgcatttctatttatagggccatattgcactaacttaaactacactagtttcctt 42819052  T
Q  107 gtaaagacctctacttaaaggagtgtannnnnnnnnctttctggtattgattgatgattcatataaaaagacttgctacatatactgcaggcctttgatt 206  Q
    |||||||| ||||||||||||||||||         ||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  42819053 gtaaagacttctacttaaaggagtgtatttttttttctttctgatattgattgat---tcatataaaaagacttgctacatatactgcaggcctttgatt 42819149  T
Q  207 gattcgtataaaaagactttctacatatgttgcaggtgaagtttagaagctaagtggttcttgaagatgcaatcttggaaattgattagacacaatttgg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42819150 gattcgtataaaaagactttctacatatgttgcaggtgaagtttagaagctaagtggttcttgaagatgcaatcttggaaattgattagacacaatttgg 42819249  T
Q  307 ttcaatttttataagcttgtaaaaaatcccacttcggataagagatggtctgacaatgtgtttataagtaacgacaatcattaccccataaatcagttta 406  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||    
T  42819250 ttcaatttttataagcttgtaaaaattcccacttcggataagagatggtctgacaatgtgtttataagtgacgacaatcatcacctcataaatcggttta 42819349  T
Q  407 gctagggtgtgttaggcccaaccatgattttgatatcaacgcctcctccaaaattcatttaaccacccactatttactattagggtccgctatcacatgt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42819350 gctagggtgtgttaggcccaaccatgattttgatatcaacgcctcctccaaaattcatttaaccacccactatttactattagggtccgctatcacatgt 42819449  T
Q  507 taccattttcatctcat 523  Q
    |||||||||||||||||    
T  42819450 taccattttcatctcat 42819466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 17468320 - 17468362
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| |||||||||||||||||||||||| |||||||||||    
T  17468320 tcccacatcggataagagatggtctgacaatatgtttataagt 17468362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 52961558 - 52961600
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| ||||||||||||||||||||||||||||    
T  52961558 tcccacatcggataggagatggtctgacaatgtgtttataagt 52961600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 7652301 - 7652337
Alignment:
Q  340 tcggataagagatggtctgacaatgtgtttataagta 376  Q
    |||||||| ||||||||||||||||||||||||||||    
T  7652301 tcggataaaagatggtctgacaatgtgtttataagta 7652337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Original strand, 33156947 - 33156986
Alignment:
Q  335 ccacttcggataagagatggtctgacaatgtgtttataag 374  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  33156947 ccacatcggataggagatggtctgacaatgtgtttataag 33156986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 7826139 - 7826097
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||| |||| |||||||||||||||||||||||||||    
T  7826139 tcccacatcgaataaaagatggtctgacaatgtgtttataagt 7826097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 20208634 - 20208592
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| || |||||||||||||||||||||||||    
T  20208634 tcccacatcggataggacatggtctgacaatgtgtttataagt 20208592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 25713369 - 25713411
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| | ||||||||||||||||||||||||||    
T  25713369 tcccacatcggataggtgatggtctgacaatgtgtttataagt 25713411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 26173564 - 26173522
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| || |||| ||||||||||||||||||||||||||||    
T  26173564 tcccacatcagatatgagatggtctgacaatgtgtttataagt 26173522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 35772240 - 35772282
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||    
T  35772240 tcccacatcggataggagatggcctgacaatgtgtttataagt 35772282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 4239789 - 4239872
Alignment:
Q  232 tatgttgcaggtgaagtttagaagctaagtggttcttgaagatgcaatcttggaaattgattagacacaatttggttcaattttt 316  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||| ||| ||||  |||| |||||||||||    
T  4239789 tatgttgcaggtaaagcttagaagctaagtggttcttgaagatgcaaacttagaaattaattggaca-gattttgttcaattttt 4239872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 10523229 - 10523272
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagta 376  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  10523229 tcccacatcggataagagatggtctgacaatgtgtttttaagta 10523272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 4239665 - 4239723
Alignment:
Q  48 aacatgcatttctatttctagggccttattgcactaacttaaactacactagtttcctt 106  Q
    ||||||||||| |||||||||| | | |||||||||||| |||||||||||||| ||||    
T  4239665 aacatgcatttttatttctaggacttgattgcactaactgaaactacactagttacctt 4239723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 25082635 - 25082602
Alignment:
Q  343 gataagagatggtctgacaatgtgtttataagta 376  Q
    ||||||||||||||||||||||||||||||||||    
T  25082635 gataagagatggtctgacaatgtgtttataagta 25082602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 16419478 - 16419520
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| || |||||||||||||||||||||||||    
T  16419478 tcccacatcggataggacatggtctgacaatgtgtttataagt 16419520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 34236754 - 34236714
Alignment:
Q  335 ccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  34236754 ccacatcggataagagatggtctgacaatgtgtttataagt 34236714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 29907834 - 29907792
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||||||||| ||||||||||||||||||||||    
T  29907834 tcccacatcggataagagatagtctgacaatgtgtttataagt 29907792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 38447542 - 38447493
Alignment:
Q  326 taaaaaatcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||| ||||||||  |||||||||||||| ||||||||||||||||||||    
T  38447542 taaagaatcccacaacggataagagatggcctgacaatgtgtttataagt 38447493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 422330 - 422283
Alignment:
Q  328 aaaaatcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||| |||||| ||||||| ||||||||||||||||||||||| ||||    
T  422330 aaaagtcccacatcggataggagatggtctgacaatgtgtttaaaagt 422283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 436
Target Start/End: Complemental strand, 24532529 - 24532426
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagtaacgacaatcattaccccataaatcagtttagctagggtgtgttaggcccaaccatg 432  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||   | ||||||| ||| || ||  | |||| |   || |||||||||||||||||||    
T  24532529 tcccacatcggataggagatggcctgacaatgtgtttataagtgggggcaatcatcacctcacaagccggttttgtggggttgtgttaggcccaaccatg 24532430  T
Q  433 attt 436  Q
    ||||    
T  24532429 attt 24532426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 5590476 - 5590434
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||    
T  5590476 tcccacatcggataggagatggtctgacaatgtgtttacaagt 5590434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 8466603 - 8466554
Alignment:
Q  326 taaaaaatcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||| |||||||| ||||||||||||||||||||  | ||||||||||||    
T  8466603 taaagaatcccacatcggataagagatggtctgaacaagtgtttataagt 8466554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 5940034 - 5940074
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataa 373  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  5940034 tcccacatcggatgagagatggtttgacaatgtgtttataa 5940074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 28213201 - 28213169
Alignment:
Q  343 gataagagatggtctgacaatgtgtttataagt 375  Q
    |||| ||||||||||||||||||||||||||||    
T  28213201 gatatgagatggtctgacaatgtgtttataagt 28213169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 6543049 - 6543009
Alignment:
Q  335 ccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6543049 ccacatcggataagagatggtctgacaatgtgtttataagt 6543009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 6054157 - 6054217
Alignment:
Q  345 taagagatggtctgacaatgtgtttataagtaacgacaatcattaccccataaatcagttt 405  Q
    ||||| ||||||||||||| ||||||||||| | ||||||||| ||| ||||| |||||||    
T  6054157 taagatatggtctgacaatctgtttataagtgaggacaatcatcacctcataagtcagttt 6054217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 3680222 - 3680264
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| | ||||||||||||||||||||||||||    
T  3680222 tcccacatcggatatgtgatggtctgacaatgtgtttataagt 3680264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 8567066 - 8567024
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| | ||||||||||||||||||||||||||    
T  8567066 tcccacctcggataggtgatggtctgacaatgtgtttataagt 8567024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 12199913 - 12199871
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| |||||||||| ||||||||||||| |||||||||||    
T  12199913 tcccacatcggataagatatggtctgacaatatgtttataagt 12199871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 12330398 - 12330356
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| || |||||||||||||||||||||||||    
T  12330398 tcccacatcggataggacatggtctgacaatgtgtttataagt 12330356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 19648305 - 19648351
Alignment:
Q  323 ttgtaaaaaatcccacttcggataagagatggtctgacaatgtgttt 369  Q
    |||| |||| |||||| ||||||| ||||||||||||||||||||||    
T  19648305 ttgttaaaagtcccacatcggatatgagatggtctgacaatgtgttt 19648351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 436
Target Start/End: Complemental strand, 19639223 - 19639118
Alignment:
Q  331 aatcccacttcggataagagatggtctgacaatgtgtttataagtaacgacaatcattaccccataaatcagtttagctagggtgtgttaggcccaacca 430  Q
    |||||||| | |||||||| |||| ||||||||||||||||||||   ||||||| | ||| || ||| | ||||||   || ||||||||| |||||||    
T  19639223 aatcccacataggataagatatggcctgacaatgtgtttataagtggggacaatcctcacctcacaaaccggtttagtggggctgtgttaggtccaacca 19639124  T
Q  431 tgattt 436  Q
     |||||    
T  19639123 cgattt 19639118  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 4906784 - 4906824
Alignment:
Q  335 ccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||| ||||||||||||| ||| ||||||||||||||||||    
T  4906784 ccacatcggataagagattgtcggacaatgtgtttataagt 4906824  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 18333575 - 18333531
Alignment:
Q  331 aatcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||    
T  18333575 aatcccacatcggataggagatggtctgacaatgtgtttataagt 18333531  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 1564675 - 1564633
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  1564675 tcccacatcggataagagatggtctgacaatgtgattataagt 1564633  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 15480298 - 15480340
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| | ||||||||||||||||||||||||||    
T  15480298 tcccacatcggataggtgatggtctgacaatgtgtttataagt 15480340  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 375
Target Start/End: Original strand, 18885447 - 18885479
Alignment:
Q  343 gataagagatggtctgacaatgtgtttataagt 375  Q
    ||||| |||||||||||||||||||||||||||    
T  18885447 gataaaagatggtctgacaatgtgtttataagt 18885479  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 375
Target Start/End: Original strand, 46794037 - 46794072
Alignment:
Q  340 tcggataagagatggtctgacaatgtgtttataagt 375  Q
    ||||||||||||||||||||||||||||||||||||    
T  46794037 tcggataagagatggtctgacaatgtgtttataagt 46794072  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 45138910 - 45138868
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||||||||||||||| ||||||||||||||||    
T  45138910 tcccacatcggataagagatggtctggcaatgtgtttataagt 45138868  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 38791558 - 38791461
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagtaacgacaatcattaccccataaatcagtttagctagggtgtgttaggcccaacca 430  Q
    |||||| ||||||| |||||||||||||||||| ||||||||| | ||||||| | ||| || |||||  ||| |   || |||||||||||||||||    
T  38791558 tcccacatcggataggagatggtctgacaatgtatttataagtgaggacaatcctcacctcacaaatcgattttgtggggttgtgttaggcccaacca 38791461  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 22729076 - 22729118
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||    
T  22729076 tcccacatcggataggagatggtctgacaatgtgtttacaagt 22729118  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 34992526 - 34992568
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| | ||||||||||||||||||||||||||    
T  34992526 tcccacatcggataggtgatggtctgacaatgtgtttataagt 34992568  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 32879723 - 32879681
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  32879723 tcccacttcggttaagagatggcctgacaatgtgtttataagt 32879681  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 14540851 - 14540797
Alignment:
Q  331 aatcccacttcggataagagatggtctgacaatgtgtttataagtaacgacaatc 385  Q
    |||| ||| ||||||| ||||||  |||||||||||||||||||||| |||||||    
T  14540851 aatcacacatcggataggagatgacctgacaatgtgtttataagtaaggacaatc 14540797  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 32278993 - 32278951
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| | ||||||||||||||||||||||||||    
T  32278993 tcccacatcggatatgtgatggtctgacaatgtgtttataagt 32278951  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 10221699 - 10221658
Alignment:
Q  344 ataagagatggtctgacaatgtgtttataagtaacgacaatc 385  Q
    |||||||||||||||| ||||||||||||||| | |||||||    
T  10221699 ataagagatggtctgaaaatgtgtttataagtgaggacaatc 10221658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 23796299 - 23796250
Alignment:
Q  326 taaaaaatcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||| || |||||||| ||||||||| |||||||||||||||||    
T  23796299 taaaaagtccaacatcggataaaagatggtctaacaatgtgtttataagt 23796250  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 28080648 - 28080684
Alignment:
Q  340 tcggataagagatggtctgacaatgtgtttataagta 376  Q
    ||||||||||||||  |||||||||||||||||||||    
T  28080648 tcggataagagatgacctgacaatgtgtttataagta 28080684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 36993175 - 36993139
Alignment:
Q  340 tcggataagagatggtctgacaatgtgtttataagta 376  Q
    ||||||| || ||||||||||||||||||||||||||    
T  36993175 tcggatatgacatggtctgacaatgtgtttataagta 36993139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 44118967 - 44118925
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  44118967 tcccacatcggataagagatggcctgacaatgtgtttataagt 44118925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 42662437 - 42662479
Alignment:
Q  331 aatcccacttcggataagagatggtctgacaatgtgtttataa 373  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||    
T  42662437 aatcccacatcgaataggagatggtctgacaatgtgtttataa 42662479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 374
Target Start/End: Original strand, 44249096 - 44249130
Alignment:
Q  340 tcggataagagatggtctgacaatgtgtttataag 374  Q
    |||||||| ||||||||||||||||||||||||||    
T  44249096 tcggataaaagatggtctgacaatgtgtttataag 44249130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 28208442 - 28208401
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataag 374  Q
    |||||| | |||||||||||||||| ||||||||||||||||    
T  28208442 tcccacattggataagagatggtctaacaatgtgtttataag 28208401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 400663 - 400631
Alignment:
Q  343 gataagagatggtctgacaatgtgtttataagt 375  Q
    |||| ||||||||||||||||||||||||||||    
T  400663 gatatgagatggtctgacaatgtgtttataagt 400631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 6250 - 6292
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| || |||||||||| ||||||||||||||||||||||    
T  6250 tcccacatcagataagagatagtctgacaatgtgtttataagt 6292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 5862 - 5820
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| |||||||||| || ||||||||||||||||||||||    
T  5862 tcccacatcggataagacatagtctgacaatgtgtttataagt 5820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 14514 - 14556
Alignment:
Q  333 tcccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    |||||| ||||||| | ||||||||||||||||||||||||||    
T  14514 tcccacatcggataggtgatggtctgacaatgtgtttataagt 14556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 14280 - 14321
Alignment:
Q  334 cccacttcggataagagatggtctgacaatgtgtttataagt 375  Q
    ||||| ||||||| | ||||||||||||||||||||||||||    
T  14280 cccacatcggataggtgatggtctgacaatgtgtttataagt 14321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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