View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4644_high_17 (Length: 271)

Name: NF4644_high_17
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4644_high_17
NF4644_high_17
[»] scaffold0003 (2 HSPs)
scaffold0003 (1-174)||(14990-15163)
scaffold0003 (1-174)||(29136-29309)
[»] chr7 (3 HSPs)
chr7 (1-174)||(16426277-16426450)
chr7 (8-164)||(11564700-11564856)
chr7 (34-101)||(23015848-23015915)
[»] chr1 (3 HSPs)
chr1 (19-109)||(17617463-17617553)
chr1 (72-102)||(15929898-15929928)
chr1 (72-101)||(15182949-15182978)
[»] chr6 (1 HSPs)
chr6 (9-101)||(12878074-12878167)
[»] chr4 (1 HSPs)
chr4 (72-106)||(12880917-12880951)
[»] chr3 (2 HSPs)
chr3 (9-115)||(3830028-3830134)
chr3 (9-114)||(3792223-3792327)
[»] chr2 (1 HSPs)
chr2 (81-150)||(29529373-29529442)


Alignment Details
Target: scaffold0003 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 14990 - 15163
Alignment:
Q  1 ttcttctataaactagataattttataggtattttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagaca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14990 ttcttctataaactagataatttcataggtattttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagaca 15089  T
Q  101 tgaaataaatattagtaagtttcaataaatatttaaagacattacaaattagaaatattttgtctgaagtccct 174  Q
    || |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  15090 tggaataaatattaggaagtttcaataaatatttaaagacattacaagttagaaatattttgtctcaagtccct 15163  T

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Target: scaffold0003; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 29136 - 29309
Alignment:
Q  1 ttcttctataaactagataattttataggtattttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagaca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136 ttcttctataaactagataatttcataggtattttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagaca 29235  T
Q  101 tgaaataaatattagtaagtttcaataaatatttaaagacattacaaattagaaatattttgtctgaagtccct 174  Q
    || |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  29236 tggaataaatattaggaagtttcaataaatatttaaagacattacaagttagaaatattttgtctcaagtccct 29309  T

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Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 16426277 - 16426450
Alignment:
Q  1 ttcttctataaactagataattttataggtattttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagaca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16426277 ttcttctataaactagataatttcataggtattttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagaca 16426376  T
Q  101 tgaaataaatattagtaagtttcaataaatatttaaagacattacaaattagaaatattttgtctgaagtccct 174  Q
    || |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  16426377 tggaataaatattaggaagtttcaataaatatttaaagacattacaagttagaaatattttgtctcaagtccct 16426450  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 11564856 - 11564700
Alignment:
Q  8 ataaactagataattttataggtattttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagacatgaaata 107  Q
    |||||||||| ||||| |||||| |||||| ||||| |||||||||||||||||| ||| |||||||||||||||| || |||||||| || ||| |||     
T  11564856 ataaactagacaatttcataggtgttttgagtcttttattggcaaatgatgtaatacggctaggaagacacctcatagaggttttggacgatatggaatg 11564757  T
Q  108 aatattagtaagtttcaataaatatttaaagacattacaaattagaaatattttgtc 164  Q
    ||||||||||| |||||||||| |||| |||||||||||| |||||||| |||||||    
T  11564756 aatattagtaaatttcaataaagatttgaagacattacaagttagaaattttttgtc 11564700  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 23015848 - 23015915
Alignment:
Q  34 ttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagacat 101  Q
    |||| ||||| |||| ||||| |||||||||||  || ||||| |||||||||||||||| |||||||    
T  23015848 ttgagtcttttattgacaaattatgtaattcggcaagcaagacgcctcatggaagttttgcaagacat 23015915  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 17617463 - 17617553
Alignment:
Q  19 aattttataggtattttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagacatgaaataaa 109  Q
    ||||| |||||| |||||| ||||| ||||  |||  |||||||||||  || |||||  |||||||||||||||||||||||||||||||    
T  17617463 aatttcataggttttttgagtcttttattgataaaccatgtaattcggcaagcaagacgtctcatggaagttttggaagacatgaaataaa 17617553  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 15929898 - 15929928
Alignment:
Q  72 aagacacctcatggaagttttggaagacatg 102  Q
    |||||||||||||||||||||||||||||||    
T  15929898 aagacacctcatggaagttttggaagacatg 15929928  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 101
Target Start/End: Original strand, 15182949 - 15182978
Alignment:
Q  72 aagacacctcatggaagttttggaagacat 101  Q
    ||||||||||||||||||||||||||||||    
T  15182949 aagacacctcatggaagttttggaagacat 15182978  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 12878074 - 12878167
Alignment:
Q  9 taaactagataattttataggtattttgaatc-tttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagacat 101  Q
    ||||||||| |||||||||||| ||||||||| ||| ||||  |||| ||||||||| |  || |||| | |||||||||||||| ||||||||    
T  12878074 taaactagacaattttataggtgttttgaatctttttattgctaaattatgtaattccgcaagcaagatatctcatggaagtttttgaagacat 12878167  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 12880951 - 12880917
Alignment:
Q  72 aagacacctcatggaagttttggaagacatgaaat 106  Q
    |||||||||||||||| ||||||||||||||||||    
T  12880951 aagacacctcatggaaattttggaagacatgaaat 12880917  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 3830028 - 3830134
Alignment:
Q  9 taaactagataattttataggtattttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagacatgaaataa 108  Q
    ||||||| ||||||||||||||  ||||| ||||| |||| ||||| ||| |  || |  || ||||||| || | |||| ||||||||| |||||||||    
T  3830028 taaactatataattttataggtggtttgagtcttttattgacaaatcatgcacctcagcaagaaagacacttcttagaagatttggaagatatgaaataa 3830127  T
Q  109 atattag 115  Q
    |||||||    
T  3830128 atattag 3830134  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 3792223 - 3792327
Alignment:
Q  9 taaactagataattttataggtattttgaatctttaattggcaaatgatgtaattcggttaggaagacacctcatggaagttttggaagacatgaaataa 108  Q
    ||||||| ||||||| ||||||  ||||| ||||| |||| ||||| ||| | ||| |  || |||||||||| | ||||||||| |||| |||||||||    
T  3792223 taaactatataatttcataggtggtttgagtcttttattgacaaatcatgcacttcagcaagaaagacacctcttagaagttttg-aagatatgaaataa 3792321  T
Q  109 atatta 114  Q
    ||||||    
T  3792322 atatta 3792327  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 29529442 - 29529373
Alignment:
Q  81 catggaagttttggaagacatgaaataaatattagtaagtttcaataaatatttaaagacattacaaatt 150  Q
    |||| ||||||||||||||||||||| || ||||  ||| ||||||||   ||| |||||||||||||||    
T  29529442 catgaaagttttggaagacatgaaatgaagattatcaaggttcaataaggctttgaagacattacaaatt 29529373  T

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