View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4644_high_20 (Length: 251)
Name: NF4644_high_20
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 4604811 - 4604984
Alignment:
| Q |
11 |
cacagacaatgttacaaaacgtacctggtaattggaggagccagtaccaaaaacaaaaccttccggaaaactgctccggcttagctcagaactgtcatca |
110 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
4604811 |
cacacacaatgttacaaaatgtacctggtaattggaggagccagtaccaaaaacaaaaccttccgggaaactgctccgacttagctcagaactgtcatca |
4604910 |
T |
|
| Q |
111 |
taattagaactaaaaacagccgcggcctttataggaacagcgaagcgagaaccggcccaaaccttattgatgcc |
184 |
Q |
| |
|
|| | | ||||| |||||| ||||||||||| ||||||| | |||||||||||||||| |||||||||||| |
|
|
| T |
4604911 |
tatgtcgtactaataacagctgcggcctttattggaacagaaaggcgagaaccggcccaacacttattgatgcc |
4604984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 4627293 - 4627389
Alignment:
| Q |
16 |
acaatgttacaaaacgtacctggtaattggaggagccagtaccaaaaacaaaaccttccggaaaactgctccggcttagctcagaactgtcatcata |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||| |
|
|
| T |
4627293 |
acaatgttacaaaacgtacctggtaattggaggagccagtaccaaaaacaaaaccttccggaaaactgctccgatttagctcaaaactatcagcata |
4627389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 18793039 - 18792973
Alignment:
| Q |
45 |
gaggagccagtaccaaaaacaaaaccttccggaaaactgctccggcttagctcagaactgtcatcat |
111 |
Q |
| |
|
|||||| ||||||| ||||| ||||||| ||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
18793039 |
gaggaggcagtaccgaaaacgaaacctttcggaaaactactccgacttagatcagaactgtcatcat |
18792973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University