View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644_high_26 (Length: 216)
Name: NF4644_high_26
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_high_26 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 23152117 - 23152318
Alignment:
| Q |
15 |
gttgttgcttactgttgttgttgtaactgcaaacagagtcaggagtatcagcaaagtgcaaagcagaagaccaaggatagataaatctaacatgatctgc |
114 |
Q |
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| T |
23152117 |
gttgctgcttacttttgttattgtaactgcaaacagagtcaggagtatcagcaaagtgcaaagcagacgaccaaggatagataaacctcacatgatctgc |
23152216 |
T |
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| Q |
115 |
ccatgaacacttgctagataaatcattatttgcagattctggcaacaattttttcacagcctttgcagctgcgtcgctaagtcgagcctgttatcacaaa |
214 |
Q |
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| T |
23152217 |
ccatgaacacttgctagataaatcattatttgcagattctggcagcaattttttcacagcctttgcagctgcgtcgctaagtcgagcctgttatcacaaa |
23152316 |
T |
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| Q |
215 |
at |
216 |
Q |
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|| |
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| T |
23152317 |
at |
23152318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 35 - 185
Target Start/End: Original strand, 23135661 - 23135811
Alignment:
| Q |
35 |
ttgtaactgcaaacagagtcaggagtatcagcaaagtgcaaagcagaagaccaaggatagataaatctaacatgatctgcccatgaacacttgctagata |
134 |
Q |
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|||||| |||||||| |||||| |||||||||||||| | || |||||||| || ||||||| || ||||||||||||||||||||||||||||||| |
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| T |
23135661 |
ttgtaagtgcaaacattgtcaggtgtatcagcaaagtgtagaggggaagaccactgaaagataaacctcacatgatctgcccatgaacacttgctagata |
23135760 |
T |
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| Q |
135 |
aatcattatttgcagattctggcaacaattttttcacagcctttgcagctg |
185 |
Q |
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| T |
23135761 |
aatcattgtttgcagattctggcaacaattttttcacagccttagcagctg |
23135811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 49866626 - 49866654
Alignment:
| Q |
59 |
gtatcagcaaagtgcaaagcagaagacca |
87 |
Q |
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| T |
49866626 |
gtatcagcaaagtgcaaagcagaagacca |
49866654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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