View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4644_high_4 (Length: 531)

Name: NF4644_high_4
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4644_high_4
NF4644_high_4
[»] chr8 (26 HSPs)
chr8 (16-450)||(41847180-41847613)
chr8 (385-450)||(3483627-3483692)
chr8 (385-446)||(10717115-10717176)
chr8 (390-446)||(22534726-22534782)
chr8 (386-445)||(28997998-28998057)
chr8 (389-446)||(10718452-10718509)
chr8 (391-450)||(1420442-1420501)
chr8 (389-446)||(45517964-45518021)
chr8 (390-446)||(36588221-36588277)
chr8 (391-446)||(4183983-4184038)
chr8 (390-445)||(14197824-14197879)
chr8 (392-446)||(28996835-28996889)
chr8 (389-447)||(35115583-35115641)
chr8 (389-446)||(22270941-22270998)
chr8 (390-443)||(36589394-36589447)
chr8 (385-446)||(38658475-38658536)
chr8 (390-446)||(22272274-22272330)
chr8 (390-446)||(22533316-22533372)
chr8 (390-438)||(30123151-30123199)
chr8 (387-446)||(30124227-30124286)
chr8 (392-446)||(4182623-4182677)
chr8 (396-446)||(34904513-34904563)
chr8 (392-450)||(39440422-39440480)
chr8 (389-446)||(38456734-38456791)
chr8 (393-442)||(45516399-45516448)
chr8 (390-450)||(10292815-10292875)
[»] chr5 (15 HSPs)
chr5 (386-446)||(4565388-4565448)
chr5 (390-446)||(3936577-3936633)
chr5 (393-445)||(14809165-14809217)
chr5 (389-446)||(3938064-3938121)
chr5 (389-450)||(34910591-34910651)
chr5 (388-444)||(15599762-15599818)
chr5 (390-446)||(27571133-27571189)
chr5 (388-446)||(3954049-3954107)
chr5 (388-446)||(31540493-31540551)
chr5 (391-446)||(31541626-31541681)
chr5 (390-445)||(34911833-34911888)
chr5 (385-431)||(25252635-25252681)
chr5 (385-431)||(25316420-25316466)
chr5 (393-446)||(3205106-3205159)
chr5 (385-446)||(4777634-4777695)
[»] chr7 (26 HSPs)
chr7 (386-446)||(17066420-17066480)
chr7 (387-446)||(41694959-41695018)
chr7 (388-446)||(31848148-31848206)
chr7 (394-444)||(38742184-38742234)
chr7 (390-446)||(24195606-24195662)
chr7 (390-446)||(41693644-41693700)
chr7 (387-445)||(5611512-5611570)
chr7 (390-446)||(35212067-35212123)
chr7 (389-441)||(43065999-43066051)
chr7 (392-443)||(31489942-31489993)
chr7 (388-443)||(32197916-32197971)
chr7 (392-450)||(32196685-32196743)
chr7 (410-450)||(554264-554304)
chr7 (394-446)||(12385711-12385763)
chr7 (390-446)||(13418949-13419005)
chr7 (388-422)||(35665874-35665908)
chr7 (386-444)||(36748193-36748250)
chr7 (389-446)||(12933417-12933474)
chr7 (389-446)||(24197107-24197164)
chr7 (392-445)||(31853549-31853602)
chr7 (394-439)||(32543483-32543528)
chr7 (394-443)||(32544781-32544830)
chr7 (391-443)||(9454115-9454167)
chr7 (394-446)||(11217075-11217127)
chr7 (389-441)||(39619800-39619852)
chr7 (390-446)||(42254957-42255013)
[»] chr3 (37 HSPs)
chr3 (386-446)||(45268574-45268634)
chr3 (386-447)||(20585647-20585708)
chr3 (386-445)||(46026071-46026130)
chr3 (392-446)||(45267306-45267360)
chr3 (390-439)||(20802847-20802896)
chr3 (389-446)||(39820608-39820665)
chr3 (385-446)||(52403128-52403189)
chr3 (385-446)||(53121296-53121357)
chr3 (390-446)||(52401016-52401072)
chr3 (390-445)||(41780813-41780868)
chr3 (386-446)||(4705676-4705736)
chr3 (389-445)||(54437472-54437528)
chr3 (390-445)||(40477379-40477434)
chr3 (391-446)||(43641143-43641198)
chr3 (391-442)||(52708625-52708676)
chr3 (391-445)||(9855178-9855232)
chr3 (392-446)||(20489362-20489416)
chr3 (392-442)||(40476222-40476272)
chr3 (388-446)||(47433813-47433871)
chr3 (392-446)||(48035736-48035790)
chr3 (388-450)||(52707533-52707595)
chr3 (385-446)||(3416489-3416550)
chr3 (387-444)||(38505585-38505642)
chr3 (393-446)||(39819314-39819367)
chr3 (389-442)||(42446524-42446577)
chr3 (389-450)||(51004140-51004201)
chr3 (390-446)||(32635593-32635649)
chr3 (390-450)||(44506581-44506641)
chr3 (391-446)||(46104343-46104398)
chr3 (388-446)||(976777-976835)
chr3 (389-443)||(22508733-22508787)
chr3 (393-446)||(20488368-20488421)
chr3 (417-446)||(46106768-46106797)
chr3 (394-438)||(15782721-15782765)
chr3 (390-446)||(46027421-46027477)
chr3 (390-446)||(53122475-53122531)
chr3 (398-446)||(55346320-55346368)
[»] chr1 (33 HSPs)
chr1 (391-446)||(46075054-46075109)
chr1 (390-446)||(47038865-47038921)
chr1 (389-446)||(27264220-27264277)
chr1 (390-446)||(9774892-9774948)
chr1 (390-446)||(27262907-27262963)
chr1 (391-446)||(24427373-24427428)
chr1 (391-445)||(24609919-24609973)
chr1 (386-439)||(2604138-2604191)
chr1 (389-446)||(35721099-35721156)
chr1 (390-446)||(11710552-11710608)
chr1 (387-443)||(34934754-34934810)
chr1 (390-446)||(37395632-37395688)
chr1 (389-449)||(48334133-48334193)
chr1 (390-450)||(48588961-48589021)
chr1 (390-450)||(48594048-48594108)
chr1 (390-450)||(48598659-48598719)
chr1 (391-446)||(23469973-23470028)
chr1 (387-446)||(39163028-39163087)
chr1 (385-446)||(26863854-26863915)
chr1 (389-446)||(46073883-46073940)
chr1 (394-446)||(9774040-9774092)
chr1 (390-446)||(20723692-20723748)
chr1 (391-443)||(30722116-30722168)
chr1 (391-446)||(11711258-11711312)
chr1 (391-446)||(20722472-20722527)
chr1 (387-442)||(35722293-35722348)
chr1 (390-440)||(45979506-45979556)
chr1 (390-443)||(17977566-17977619)
chr1 (390-443)||(35911895-35911948)
chr1 (390-443)||(50164402-50164455)
chr1 (393-450)||(51240121-51240178)
chr1 (390-446)||(24611121-24611177)
chr1 (391-443)||(37396847-37396899)
[»] chr6 (19 HSPs)
chr6 (389-446)||(34998145-34998202)
chr6 (394-450)||(1171651-1171707)
chr6 (386-446)||(17517313-17517373)
chr6 (391-449)||(1974153-1974211)
chr6 (393-450)||(17516164-17516221)
chr6 (391-446)||(18810532-18810587)
chr6 (391-446)||(21165246-21165301)
chr6 (387-445)||(3276363-3276421)
chr6 (388-446)||(21953203-21953261)
chr6 (389-446)||(34995112-34995169)
chr6 (394-446)||(3279503-3279555)
chr6 (390-446)||(16995450-16995506)
chr6 (390-446)||(29291358-29291414)
chr6 (391-450)||(17000277-17000336)
chr6 (391-446)||(20393272-20393327)
chr6 (391-446)||(20897501-20897556)
chr6 (393-439)||(25439650-25439696)
chr6 (386-438)||(1972395-1972447)
chr6 (410-446)||(26419532-26419568)
[»] chr2 (14 HSPs)
chr2 (385-446)||(25977864-25977925)
chr2 (389-446)||(2412432-2412489)
chr2 (390-446)||(1777468-1777524)
chr2 (391-443)||(11087049-11087101)
chr2 (390-446)||(25979255-25979311)
chr2 (390-446)||(30843643-30843699)
chr2 (389-446)||(23861750-23861807)
chr2 (389-446)||(36837782-36837839)
chr2 (394-445)||(12067000-12067051)
chr2 (389-446)||(20245309-20245367)
chr2 (388-450)||(29794317-29794378)
chr2 (390-446)||(8809595-8809652)
chr2 (391-443)||(1778797-1778849)
chr2 (393-445)||(23863055-23863107)
[»] scaffold0562 (1 HSPs)
scaffold0562 (386-446)||(9917-9977)
[»] chr4 (28 HSPs)
chr4 (386-446)||(3879081-3879141)
chr4 (390-446)||(33137232-33137288)
chr4 (389-441)||(38166493-38166545)
chr4 (386-446)||(45619735-45619795)
chr4 (390-443)||(29060889-29060942)
chr4 (386-446)||(42359350-42359410)
chr4 (390-445)||(3880501-3880556)
chr4 (391-446)||(22204055-22204110)
chr4 (391-450)||(32699314-32699373)
chr4 (389-446)||(45618283-45618340)
chr4 (387-446)||(19674410-19674469)
chr4 (391-450)||(19675620-19675679)
chr4 (390-446)||(40198576-40198629)
chr4 (389-443)||(41933816-41933870)
chr4 (389-442)||(35054660-35054713)
chr4 (389-446)||(54121704-54121761)
chr4 (390-446)||(17281570-17281626)
chr4 (390-446)||(17370072-17370128)
chr4 (394-446)||(17371849-17371901)
chr4 (389-445)||(33134889-33134945)
chr4 (390-450)||(34659705-34659765)
chr4 (394-442)||(41935078-41935126)
chr4 (390-446)||(55542583-55542639)
chr4 (394-445)||(16574373-16574424)
chr4 (390-445)||(29415545-29415600)
chr4 (391-450)||(32697999-32698058)
chr4 (390-442)||(16573377-16573429)
chr4 (390-446)||(42358031-42358087)
[»] scaffold0002 (4 HSPs)
scaffold0002 (391-445)||(374335-374389)
scaffold0002 (388-445)||(345902-345959)
scaffold0002 (385-438)||(376381-376434)
scaffold0002 (388-446)||(344934-344992)
[»] scaffold0106 (2 HSPs)
scaffold0106 (389-446)||(30911-30968)
scaffold0106 (388-446)||(29726-29784)
[»] scaffold0517 (2 HSPs)
scaffold0517 (390-446)||(11526-11582)
scaffold0517 (391-443)||(10315-10367)
[»] scaffold0230 (1 HSPs)
scaffold0230 (391-446)||(435-490)
[»] scaffold0001 (2 HSPs)
scaffold0001 (391-446)||(120989-121044)
scaffold0001 (391-446)||(119593-119648)
[»] scaffold0095 (1 HSPs)
scaffold0095 (392-450)||(42755-42813)
[»] scaffold0009 (1 HSPs)
scaffold0009 (390-444)||(202578-202632)


Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 41847613 - 41847180
Alignment:
Q  16 gatgaaaaatattgtaaggagggtaaaaccacataagcactgctccgtccgttgtacaaaatttagtaaggatctcatctatatttactattgacaatta 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41847613 gatgaaaaatattgtaaggagggtaaaaccacataagcattgctccgtccgttgtacaaa-tttagtaaggatctcatctatatttactattgacaatta 41847515  T
Q  116 atgcgatcaagtactagcttgcgatccacctcacagatgacttgtgagaaaccaaaagaagctgtccattacttgaaggttccacaagcctctcctttca 215  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41847514 atgtgatcaagtactagcttgcgatccacctcacagatgacttgtgagaaaccaaaagaagctatccattacttgaaggttccacaagcctctcctttca 41847415  T
Q  216 ctggtttcacgtttccaagctctccaatctccgtcgtagctgccgtttgcttgaatgattcgttgttaaaatatcccaaatatctccatcgatcattgtc 315  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  41847414 ctggtttcacgtttccaagctctccaatctccgtcgtagctaccgtttgcttgaatgattcgttgttaaaatatcccaaatatctcc----atcattgtc 41847319  T
Q  316 ccctaagcatagttgatagaaataatacaatgtaacatggggttcaaattttagatcacctatgt----cttcattttaggctaaaatatgtttttaatc 411  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||     ||||||||||||||||||||| ||||| ||    
T  41847318 ccctaagcatagttgatagaaataatacaatgtaatatggggttcaatttttcgatcacctatgtattcattcattttaggctaaaatatgcttttagtc 41847219  T
Q  412 cctacaaatatagcgagtttgggttttggtccctgataa 450  Q
     || |||||||||||| |||| |||||||||||||||||    
T  41847218 tctgcaaatatagcgaatttgagttttggtccctgataa 41847180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 3483627 - 3483692
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||| |||||||||||||||  ||||| ||||||||||||||||| |||||||||||||||||    
T  3483627 attttagactaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctgataa 3483692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 10717115 - 10717176
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  10717115 attttaggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctg 10717176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 22534782 - 22534726
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  22534782 aggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctg 22534726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 28998057 - 28997998
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    |||| |||||||||||||||||  ||||| ||||||||||||||||||||||||||||||    
T  28998057 tttttggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccct 28997998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 10718509 - 10718452
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  10718509 taggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctg 10718452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 1420501 - 1420442
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    |||||||||||||||||  ||||| |||||||||||||||||| | ||||||||||||||    
T  1420501 ggctaaaatatgtttttggtccctgcaaatatagcgagtttggatattggtccctgataa 1420442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 45518021 - 45517964
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||  ||||| ||| |||||||||||||||||||||||||||    
T  45518021 taggctaaaatatgcttttggtccctgcaagtatagcgagtttgggttttggtccctg 45517964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 36588221 - 36588277
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||||||    
T  36588221 aggctaaaatatgcttttggtccctgcaaatatagcgagtttgcgttttggtccctg 36588277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 4184038 - 4183983
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| ||||| ||||| ||||||||| | |||||||||||||||||||    
T  4184038 ggctaaaatatgcttttagtccctgcaaatatagtgcgtttgggttttggtccctg 4183983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 445
Target Start/End: Original strand, 14197824 - 14197879
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||||||||  ||||| ||||||| |||||||||| |||||||||||    
T  14197824 aggctaaaatatgtttttggtccctgcaaatatggcgagtttggattttggtccct 14197879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 28996835 - 28996889
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||| ||||  ||||| ||||||||| |||||||||||||||||||||    
T  28996835 gctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctg 28996889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 35115641 - 35115583
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctga 447  Q
    |||||||||||||| ||||| |||||||||||||| |  |||| |||||||||||||||    
T  35115641 taggctaaaatatggttttagtccctacaaatatacctcgttttggttttggtccctga 35115583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 22270941 - 22270998
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| |||| |||||| |||||||||||| ||||| |||| |||||||    
T  22270941 taggctaaaatatgcttttgatccctgcaaatatagcgaatttggattttagtccctg 22270998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 36589447 - 36589394
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    ||||||||||||| ||||| | ||| |||||||||||||||| |||||||||||    
T  36589447 aggctaaaatatgattttagttcctgcaaatatagcgagtttaggttttggtcc 36589394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 38658475 - 38658536
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||| || |  ||| | |||||||||||| ||||||||||||||||||    
T  38658475 attttaggctaaaatatgcttctggtccatgcaaatatagcgaatttgggttttggtccctg 38658536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 22272330 - 22272274
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| ||||  ||||  |||||||||||| ||||||||||||||||||    
T  22272330 aggctaaaatatgcttttggtccccgcaaatatagcgaatttgggttttggtccctg 22272274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 22533316 - 22533372
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| ||||  |||||  | ||||||||||||||||||||||||||||    
T  22533316 aggctaaaatatgcttttggtccctgtatatatagcgagtttgggttttggtccctg 22533372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 30123151 - 30123199
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggtttt 438  Q
    ||||||||||||||||||  ||| |||||||||||||| ||||||||||    
T  30123151 aggctaaaatatgtttttggtccatacaaatatagcgaatttgggtttt 30123199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 30124286 - 30124227
Alignment:
Q  387 tttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||| ||||  ||||| |||||| ||| |||||| |||||||||||||    
T  30124286 tttaggctaaaatatgcttttggtccctgcaaataaagcaagtttgagttttggtccctg 30124227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 4182623 - 4182677
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||| ||||  |||||  ||||||||||| ||||||||||||||||||    
T  4182623 gctaaaatatgcttttggtccctgtaaatatagcgaatttgggttttggtccctg 4182677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 34904563 - 34904513
Alignment:
Q  396 aaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||| ||||| ||||| |||||||||||| ||||||||||||| ||||    
T  34904563 aaatatgattttagtcccttcaaatatagcgaatttgggttttggttcctg 34904513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 39440480 - 39440422
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||| ||||  ||| | ||||||| ||||||||| |||||||||||||||||    
T  39440480 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtccctgataa 39440422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 38456791 - 38456734
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||  ||||| |||||||||| | ||| ||||||||||||||    
T  38456791 taggctaaaatatgcttttggtccctgcaaatatagcaaatttaggttttggtccctg 38456734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 45516399 - 45516448
Alignment:
Q  393 ctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtc 442  Q
    |||||||||||||||| ||| |  ||||||||||| ||||||||||||||    
T  45516399 ctaaaatatgtttttagtccatgtaaatatagcgaatttgggttttggtc 45516448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 10292815 - 10292875
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||||| ||||  ||||| |||||||||||| |||| |||||| ||| ||||||    
T  10292815 aggctaaaatatgattttggtcccttcaaatatagcgaatttgcgttttgatccttgataa 10292875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 4565388 - 4565448
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4565388 ttttaggctaaaatatgtttttagtccctacaaatatagcgagtttgggttttggtccctg 4565448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 3936577 - 3936633
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  3936577 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctg 3936633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 445
Target Start/End: Original strand, 14809165 - 14809217
Alignment:
Q  393 ctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  14809165 ctaaaatatgtttttgatccctacaaatatagcgaatttggattttggtccct 14809217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 3938121 - 3938064
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||| ||||| |||||||||| ||||| ||||||||||||||    
T  3938121 taggctaaaatatgcttttagtccctgcaaatatagcaagtttaggttttggtccctg 3938064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 34910591 - 34910651
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||||||||||| |||||| |||||||||| |||||| ||||||||| |||||||    
T  34910591 taggctaaaatatgttttt-atccctgcaaatatagcaagtttgagttttggtctctgataa 34910651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 15599762 - 15599818
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccc 444  Q
    ||||||||||||||| ||||  ||||||||||||| |||| ||||||||||||||||    
T  15599762 ttaggctaaaatatgcttttggtccctacaaatatggcgaatttgggttttggtccc 15599818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 27571189 - 27571133
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| ||||  ||||| |||||||||||||||||||||||| ||||||    
T  27571189 aggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttgatccctg 27571133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 3954049 - 3954107
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||||  ||| | |||||||| ||| ||||||||||||||||||    
T  3954049 ttaggctaaaatatgtttttggtccttgcaaatatatcgaatttgggttttggtccctg 3954107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 31540493 - 31540551
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||||  ||||| |||||||| ||| ||||||||||||| ||||    
T  31540493 ttaggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtacctg 31540551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 31541681 - 31541626
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||| |||||| |||||||| ||| ||| |||||| |||||||    
T  31541681 ggctaaaatatgtttttgatccctgcaaatataacgaattttggtttttgtccctg 31541626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 34911888 - 34911833
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||| ||||  ||||| |||||||||||||||||| ||||| |||||    
T  34911888 aggctaaaatatgattttggtccctgcaaatatagcgagtttggattttgatccct 34911833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 25252635 - 25252681
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagttt 431  Q
    ||||| ||||||||||||||||| ||| || ||||||||||||||||    
T  25252635 atttttggctaaaatatgtttttgatctctgcaaatatagcgagttt 25252681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 25316420 - 25316466
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagttt 431  Q
    ||||| ||||||||||||||||| ||| || ||||||||||||||||    
T  25316420 atttttggctaaaatatgtttttgatctctgcaaatatagcgagttt 25316466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 3205159 - 3205106
Alignment:
Q  393 ctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||| |||| |||||| |||||||   |||||||||||||||||||||    
T  3205159 ctaaaatatgcttttgatccctgcaaatatgatgagtttgggttttggtccctg 3205106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 4777634 - 4777695
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||| ||||||| ||||| ||| | |||||||||  ||||||| ||||||||||||    
T  4777634 attttaggcttaaatatgcttttagtccttgcaaatatagtaagtttggattttggtccctg 4777695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 17066420 - 17066480
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  17066420 ttttaggctaaaatatgcttttaatccctgcaaatatagcgagtttgggttttggtccctg 17066480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 41695018 - 41694959
Alignment:
Q  387 tttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  41695018 tttaggctaaaatatgtttttcatccctgcaaatatagcgagtttgagttttggtccctg 41694959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 446
Target Start/End: Complemental strand, 31848206 - 31848148
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  31848206 ttaggctaaaatatgtttttagtccctgcaaatatagcgaatttgggttttggtccctg 31848148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 38742184 - 38742234
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccc 444  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  38742184 taaaatatgtttttagtccctgcaaatatagcgagtttgggttttggtccc 38742234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 24195606 - 24195662
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||||| ||||||    
T  24195606 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttgctccctg 24195662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 41693644 - 41693700
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||    
T  41693644 aggctaaaatatgtttttgatccctgcaaatatggcgaatttgggttttggtccctg 41693700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 5611570 - 5611512
Alignment:
Q  387 tttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||||||||||| ||||||    
T  5611570 tttaggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttcgtccct 5611512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 35212067 - 35212123
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| |||||||  ||||||||||||||||||||||    
T  35212067 aggctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctg 35212123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 441
Target Start/End: Original strand, 43065999 - 43066051
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggt 441  Q
    |||| |||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  43065999 taggttaaaatatgttttttatccctgcaaatatagcgagtttgagttttggt 43066051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 31489993 - 31489942
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    ||||||||||||||||  ||||| |||||||| |||||||||||||||||||    
T  31489993 gctaaaatatgtttttggtccctgcaaatataacgagtttgggttttggtcc 31489942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 32197971 - 32197916
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    ||||||||||||||| ||||  ||||| |||||||||||| |||||||||||||||    
T  32197971 ttaggctaaaatatgcttttggtccctgcaaatatagcgaatttgggttttggtcc 32197916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 450
Target Start/End: Original strand, 32196685 - 32196743
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||||||||  ||||| |||||||||||  ||||| ||||||||||||||||    
T  32196685 gctaaaatatgtttttggtccctgcaaatatagcgtatttggattttggtccctgataa 32196743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 554264 - 554304
Alignment:
Q  410 tccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  554264 tccctgcaaatatagcgagtttgggttttggtccccgataa 554304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 12385763 - 12385711
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||| ||||  ||||| |||||||||||||||||| ||||||||||||    
T  12385763 taaaatatgattttggtccctgcaaatatagcgagtttggattttggtccctg 12385711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 13418949 - 13419005
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| ||||||| |||| ||||||| ||||||||||    
T  13418949 aggctaaaatatgtttttggtccctgcaaatattgcgaatttgggtattggtccctg 13419005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 35665874 - 35665908
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatat 422  Q
    ||||||||||||||| |||||||||||||||||||    
T  35665874 ttaggctaaaatatggttttaatccctacaaatat 35665908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 36748193 - 36748250
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccc 444  Q
    |||| |||||||||||||||||  ||||| ||||||| | |||||||||||||||||||    
T  36748193 tttttggctaaaatatgtttttggtccctgcaaatat-gagagtttgggttttggtccc 36748250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 12933417 - 12933474
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||  ||||| ||||||||| |||||||  ||||||||||||    
T  12933417 taggctaaaatatgcttttggtccctgcaaatatagtgagtttgaattttggtccctg 12933474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 24197164 - 24197107
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||  ||||| |||||||||||| |||| |||||||| ||||    
T  24197164 taggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggttcctg 24197107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 31853549 - 31853602
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||||||  ||||| ||||||| | |||||||| |||||||||||    
T  31853549 gctaaaatatgtttttggtccctgcaaatattgtgagtttggattttggtccct 31853602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 32543483 - 32543528
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttg 439  Q
    ||||||||| ||||  |||||||||||||||| |||||||||||||    
T  32543483 taaaatatgcttttggtccctacaaatatagcaagtttgggttttg 32543528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 32544830 - 32544781
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    ||||||||| ||||  ||||| |||||||||||| |||||||||||||||    
T  32544830 taaaatatgattttggtccctgcaaatatagcgaatttgggttttggtcc 32544781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 9454115 - 9454167
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    |||||||||||| |||  |||||| |||| ||||| |||||||||||||||||    
T  9454115 ggctaaaatatgctttgcatccctgcaaacatagcaagtttgggttttggtcc 9454167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 11217127 - 11217075
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||| ||||  ||||| |||||||||||||||||  ||||||||||||    
T  11217127 taaaatatgcttttggtccctgcaaatatagcgagtttgaattttggtccctg 11217075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 39619852 - 39619800
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggt 441  Q
    |||||||||||||| ||||  ||| | ||||||| ||||||||||||||||||    
T  39619852 taggctaaaatatgcttttggtccatgcaaatatggcgagtttgggttttggt 39619800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 42254957 - 42255013
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| ||||  |||||  |||||| ||||||||| |||||||||||||    
T  42254957 aggctaaaatatgcttttggtccctgtaaatatggcgagtttgagttttggtccctg 42255013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 45268634 - 45268574
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  45268634 ttttaggctaaaatatgtttttaatccctgcaaatatagcaagtttgggttttggtccctg 45268574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 447
Target Start/End: Complemental strand, 20585708 - 20585647
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctga 447  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  20585708 ttttaggctaaaatatgtttttgatccctgcaaatatagcgagtttggattttggtccctga 20585647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 46026071 - 46026130
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||| |||||||||||    
T  46026071 ttttaggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccct 46026130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 45267306 - 45267360
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  45267306 gctaaaatatgtttttgatccctgcaaatatagcgagtttgagttttggtccctg 45267360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 439
Target Start/End: Original strand, 20802847 - 20802896
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttg 439  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||    
T  20802847 aggctaaaatatgtttctagtccctacaaatatagcgagtttgggttttg 20802896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 39820665 - 39820608
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  39820665 taggctaaaatatggttttggtccctgcaaatatagcgagtttgggttttggtccctg 39820608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 52403189 - 52403128
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||| ||||  ||||| ||||||| |||||||||||||||||||||||    
T  52403189 attttaggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtccctg 52403128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 53121296 - 53121357
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||| ||||||||||||||||||  ||||| ||||||||||||||||||||||| |||||||    
T  53121296 atttaaggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctg 53121357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 52401016 - 52401072
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| ||||||| |||||||||||||||||||||||    
T  52401016 aggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctg 52401072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 41780868 - 41780813
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  41780868 aggctaaaatatgtttttgatccctaaaaatatagcaagtttgggtttcggtccct 41780813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 4705676 - 4705736
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||| |||||||||||| |||| |||||| ||||||| |||||||| ||||||||||||||    
T  4705676 tttttggctaaaatatgcttttgatccctgcaaatatggcgagtttaggttttggtccctg 4705736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 54437528 - 54437472
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    |||||||||||||||||||  ||||| |||||||||||| |||| ||||||||||||    
T  54437528 taggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttggtccct 54437472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 40477434 - 40477379
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||| ||||  ||||| |||||||| |||||||||||||||||||||    
T  40477434 aggctaaaatatgattttggtccctgcaaatataacgagtttgggttttggtccct 40477379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 43641143 - 43641198
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| ||||| ||||| |||||||||||||||||| || |||||||||    
T  43641143 ggctaaaatatgcttttagtccctgcaaatatagcgagtttggattatggtccctg 43641198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 52708676 - 52708625
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtc 442  Q
    |||||||||||| ||||  ||||| |||||||||||||||||||||||||||    
T  52708676 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtc 52708625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 9855178 - 9855232
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    |||||||||||| |||| ||||||  ||||||||||||||||| |||||||||||    
T  9855178 ggctaaaatatgattttgatccctgtaaatatagcgagtttggattttggtccct 9855232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 20489416 - 20489362
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||  ||||| |||||||  ||||||||||||||||||||||    
T  20489416 gctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctg 20489362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 442
Target Start/End: Original strand, 40476222 - 40476272
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtc 442  Q
    ||||||||||||||||  ||||| |||||||||||||||||| ||||||||    
T  40476222 gctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtc 40476272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 446
Target Start/End: Complemental strand, 47433871 - 47433813
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||| ||||  ||||| |||||||||||| |||| |||||||||||||    
T  47433871 ttaggctaaaatatggttttggtccctgcaaatatagcgaatttgagttttggtccctg 47433813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 48035790 - 48035736
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||| |||||| |||||||  ||||||||| ||||||||||||    
T  48035790 gctaaaatatgtttttgatccctgcaaatatgacgagtttggattttggtccctg 48035736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 450
Target Start/End: Original strand, 52707533 - 52707595
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||| ||||||||||||||  ||| | |||||||||||| |||| |||||||||||||||||    
T  52707533 ttaggttaaaatatgtttttggtccttgcaaatatagcgaatttgagttttggtccctgataa 52707595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 3416489 - 3416550
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||| ||||||||||||| |||| ||||||  ||||||||| ||||||| ||||||||||||    
T  3416489 atttaaggctaaaatatgattttgatccctgtaaatatagcaagtttggtttttggtccctg 3416550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 38505642 - 38505585
Alignment:
Q  387 tttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccc 444  Q
    |||||||||||||||| ||||  ||||| ||||||| ||||||||| |||||||||||    
T  38505642 tttaggctaaaatatgcttttgctccctgcaaatatggcgagtttgagttttggtccc 38505585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 39819314 - 39819367
Alignment:
Q  393 ctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||| ||||| ||||| |||||||||||||||||  ||||||||||||    
T  39819314 ctaaaatatggttttagtccctgcaaatatagcgagtttgaattttggtccctg 39819367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 42446524 - 42446577
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtc 442  Q
    |||||||||||||| ||||  ||||| ||||||| |||||||||||||||||||    
T  42446524 taggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtc 42446577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 51004140 - 51004201
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||||||||||||  ||||  |||||| |||| |||||||||||||||| |||||    
T  51004140 taggctaaaatatgtttttagaccctgtaaatatggcgaatttgggttttggtcccggataa 51004201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 32635593 - 32635649
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| |||||  ||| |  ||||||||||||||||||||||||||||||    
T  32635593 aggctaaaatatattttttgtccttgtaaatatagcgagtttgggttttggtccctg 32635649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 44506581 - 44506641
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||| |||||| ||| |||||||    
T  44506581 aggctaaaatatggttttagtccctgcaaatataacgagttttggtttttgtctctgataa 44506641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 46104343 - 46104398
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| ||||  ||||| ||||||||||||||||| ||||| |||||||    
T  46104343 ggctaaaatatgattttggtccctgcaaatatagcgagtttgagtttttgtccctg 46104398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 976777 - 976835
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||| |||| |||||| |||||||||||| |||  ||||| |||||||    
T  976777 ttaggctaaaatatgcttttgatccctgcaaatatagcgaatttaagttttagtccctg 976835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 22508733 - 22508787
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    |||| ||||||||| ||||  ||||| ||||||||||||||||| ||||||||||    
T  22508733 taggttaaaatatgattttggtccctgcaaatatagcgagtttgagttttggtcc 22508787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 20488368 - 20488421
Alignment:
Q  393 ctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||  ||||| ||||||| | || ||||||||||||||||||    
T  20488368 ctaaaatatgtttttggtccctgcaaatatggtgaatttgggttttggtccctg 20488421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 446
Target Start/End: Complemental strand, 46106797 - 46106768
Alignment:
Q  417 aaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||||||||||||||    
T  46106797 aaatatagcgagtttgggttttggtccctg 46106768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 15782765 - 15782721
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggtttt 438  Q
    ||||||||||||||  |||||||||||||||||| |||| |||||    
T  15782765 taaaatatgtttttggtccctacaaatatagcgaatttgagtttt 15782721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 46027477 - 46027421
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||  ||||  ||||| |||||||||||||||||  ||||||||||||    
T  46027477 aggctaaaatatacttttggtccctgcaaatatagcgagtttgaattttggtccctg 46027421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 53122531 - 53122475
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| ||||| ||||| ||||||||| |||| |  |||||||||||||    
T  53122531 aggctaaaatatgcttttagtccctgcaaatatagagagtgtaagttttggtccctg 53122475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 55346368 - 55346320
Alignment:
Q  398 atatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||| ||||| || ||||||||||||||||||||  ||||||||||||    
T  55346368 atatgcttttagtctctacaaatatagcgagtttgaattttggtccctg 55346320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 46075109 - 46075054
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  46075109 ggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttggtccctg 46075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 47038865 - 47038921
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||    
T  47038865 aggctaaaatatgtttttagtccctgcaaatatagctagtttgggttttggtccctg 47038921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 27264277 - 27264220
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  27264277 taggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttggtccctg 27264220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 9774948 - 9774892
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  9774948 aggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctg 9774892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 27262907 - 27262963
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| ||||||||||||||||| |||||||||||||    
T  27262907 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgtgttttggtccctg 27262963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 24427428 - 24427373
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||| |||||||    
T  24427428 ggctaaaatatgtttttggtccctacaaatatagcgagtttgagttttagtccctg 24427373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 24609919 - 24609973
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    |||||||||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  24609919 ggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccct 24609973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 2604191 - 2604138
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttg 439  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||    
T  2604191 ttttaggctaaaatatgtttttagtccctgcaaatatggggagtttgggttttg 2604138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 35721099 - 35721156
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||||  ||||| |||||||| ||| ||||||||||||||||||    
T  35721099 taggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtccctg 35721156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 11710552 - 11710608
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||| ||||||  ||||||| |||| |||||||||||||||||    
T  11710552 aggctaaaatatgtttttgatccctgtaaatataacgaggttgggttttggtccctg 11710608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 34934810 - 34934754
Alignment:
Q  387 tttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    |||||||||||||||| ||||  ||||| |||||||||||| |||||||||||||||    
T  34934810 tttaggctaaaatatgctttttgtccctgcaaatatagcgaatttgggttttggtcc 34934754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 37395632 - 37395688
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| |||||||||||  ||||||||||||||||||    
T  37395632 aggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctg 37395688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 449
Target Start/End: Complemental strand, 48334193 - 48334133
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgata 449  Q
    |||||||||||||| ||||  |||||||||||||||||| |||| |||||||| |||||||    
T  48334193 taggctaaaatatgcttttggtccctacaaatatagcgaatttgagttttggttcctgata 48334133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 48589021 - 48588961
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||||||||||  |||||  |||||| | |||||||||||||||||||||||||    
T  48589021 aggctaaaatatgtttttggtccctgtaaatatggtgagtttgggttttggtccctgataa 48588961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 48594108 - 48594048
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||||||||||  |||||  |||||| |||||||||||||||| ||||||||||    
T  48594108 aggctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttgatccctgataa 48594048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 48598719 - 48598659
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||||||||||  |||||  |||||| |||||||||||||||| ||||||||||    
T  48598719 aggctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttgatccctgataa 48598659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 23470028 - 23469973
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||  ||||| |||||||||||||||| ||||||| ||||||    
T  23470028 ggctaaaatatgtttttggtccctgcaaatatagcgagtttcggttttgatccctg 23469973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 39163087 - 39163028
Alignment:
Q  387 tttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||| ||||  ||||| ||||||| ||||| |||||||||||||||||    
T  39163087 tttaggctaaaatatgcttttggtccctgcaaatatggcgaggttgggttttggtccctg 39163028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 26863854 - 26863915
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||| |||||||||| |||||||  ||||| |||||||||||| |||| |||||||||||||    
T  26863854 atttaaggctaaaatgtgtttttggtccctgcaaatatagcgaatttgagttttggtccctg 26863915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 46073883 - 46073940
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| |||| |||||| |||||||||| | |||||||||| |||||||    
T  46073883 taggctaaaatatgcttttgatccctgcaaatatagcaaatttgggttttagtccctg 46073940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 9774040 - 9774092
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||  ||||| |||||||| |||||||| |||||||||||||    
T  9774040 taaaatatgtttttggtccctgcaaatataacgagtttgagttttggtccctg 9774092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 20723748 - 20723692
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| |||||||||||| |||| ||||| |||||||    
T  20723748 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttagtccctg 20723692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 30722116 - 30722168
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    |||||||||||| ||||||||||| | |||||||| ||||||| |||||||||    
T  30722116 ggctaaaatatgcttttaatccctgcgaatatagcaagtttggattttggtcc 30722168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 11711312 - 11711258
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||  ||||| |||||||||||| |||||| |||||||||||    
T  11711312 ggctaaaatatgtttttggtccctgcaaatatagcgaatttggg-tttggtccctg 11711258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 20722472 - 20722527
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||| || ||||  ||||| |||||||||||| ||||||||||||||||||    
T  20722472 ggctaaaatgtgcttttggtccctgcaaatatagcgaatttgggttttggtccctg 20722527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 442
Target Start/End: Complemental strand, 35722348 - 35722293
Alignment:
Q  387 tttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtc 442  Q
    |||||||||||||||||||||  |||||  ||||||||||| ||||| ||||||||    
T  35722348 tttaggctaaaatatgtttttggtccctgtaaatatagcgaatttggattttggtc 35722293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 45979556 - 45979506
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttgg 440  Q
    ||||||||||||||||||  ||||| |||||||||||| |||| |||||||    
T  45979556 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttgg 45979506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 17977619 - 17977566
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    ||||| ||||||| ||||  ||||| |||||||||||| |||||||||||||||    
T  17977619 aggcttaaatatggttttggtccctgcaaatatagcgaatttgggttttggtcc 17977566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 35911948 - 35911895
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    ||||||||||||| ||||  ||||| |||||||||||| ||||| |||||||||    
T  35911948 aggctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtcc 35911895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 50164402 - 50164455
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    ||||||||||||| ||||  ||||| ||||||| ||||||||| ||||||||||    
T  50164402 aggctaaaatatgcttttggtccctgcaaatatggcgagtttgagttttggtcc 50164455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 51240121 - 51240178
Alignment:
Q  393 ctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    |||||||||||||||  || || |||||||||||| ||||| ||||| ||||||||||    
T  51240121 ctaaaatatgtttttggtctctgcaaatatagcgaatttggattttgatccctgataa 51240178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 24611177 - 24611121
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  |||||  ||||||  |||||||| |||||||||||||    
T  24611177 aggctaaaatatgtttttggtccctgtaaatatgacgagtttgagttttggtccctg 24611121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 37396899 - 37396847
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    |||||||||||| ||||  ||||| |||||||||||| |||| ||||||||||    
T  37396899 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtcc 37396847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 34998202 - 34998145
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  34998202 taggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctg 34998145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 1171707 - 1171651
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    |||||||||||||| |||||| |||||||| ||||||||| ||||||||||||||||    
T  1171707 taaaatatgtttttgatccctgcaaatataacgagtttggtttttggtccctgataa 1171651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 17517373 - 17517313
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||    
T  17517373 ttttaggctaaaatatgtttttggtccctgcaaatatggcgagtttgagttttggtccctg 17517313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 449
Target Start/End: Complemental strand, 1974211 - 1974153
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgata 449  Q
    ||||||||||||||||| |||| | |||||||||||| |||| ||||||||||||||||    
T  1974211 ggctaaaatatgtttttgatccttgcaaatatagcgaatttgagttttggtccctgata 1974153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 17516164 - 17516221
Alignment:
Q  393 ctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    |||||||||||||||  ||||| ||||||| | |||||||||||||||||||||||||    
T  17516164 ctaaaatatgtttttggtccctgcaaatatggtgagtttgggttttggtccctgataa 17516221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 18810532 - 18810587
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| ||||  ||||| ||||||||| |||||||||||||||||||||    
T  18810532 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctg 18810587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 21165246 - 21165301
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| ||||  ||||| ||||||||||||||||| |||||||||||||    
T  21165246 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgtgttttggtccctg 21165301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 3276363 - 3276421
Alignment:
Q  387 tttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    |||||||||||||||||||||  ||||| |||||||||||| ||||| |||| ||||||    
T  3276363 tttaggctaaaatatgtttttggtccctgcaaatatagcgaatttggattttagtccct 3276421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 21953203 - 21953261
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||| ||||  ||||| |||||||||||| ||||| ||||||||||||    
T  21953203 ttaggctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccctg 21953261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 34995112 - 34995169
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| |||| |||||| |||||||||||| |||| |||||||| ||||    
T  34995112 taggctaaaatatgcttttgatccctgcaaatatagcgaatttgagttttggttcctg 34995169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 3279555 - 3279503
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| |||||| |||||||||||||||||  ||||||| ||||    
T  3279555 taaaatatgtttttgatccctgcaaatatagcgagtttgaattttggttcctg 3279503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 16995450 - 16995506
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| ||||||||  || ||||||||||||||||||    
T  16995450 aggctaaaatatgtttttggtccctgcaaatataaagaatttgggttttggtccctg 16995506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 29291358 - 29291414
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| ||||  ||| | ||||||| |||||||||||||||||||||||    
T  29291358 aggctaaaatatgcttttggtccttgcaaatatggcgagtttgggttttggtccctg 29291414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 17000336 - 17000277
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    |||||||||||  ||||  ||||| ||||| ||| |||||||||||||||||||||||||    
T  17000336 ggctaaaatatacttttggtccctgcaaatgtagtgagtttgggttttggtccctgataa 17000277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 20393327 - 20393272
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| |||| |||||| |||||||||||| |||||||||  |||||||    
T  20393327 ggctaaaatatgcttttgatccctgcaaatatagcgaatttgggtttcagtccctg 20393272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 20897556 - 20897501
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| ||||  ||||| ||||||||| || ||||||||||||||||||    
T  20897556 ggctaaaatatggttttggtccctgcaaatatagtgaatttgggttttggtccctg 20897501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 25439650 - 25439696
Alignment:
Q  393 ctaaaatatgtttttaatccctacaaatatagcgagtttgggttttg 439  Q
    |||||||||||||||| ||||| |||||||| ||| |||||||||||    
T  25439650 ctaaaatatgtttttagtccctgcaaatataacgattttgggttttg 25439696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 1972395 - 1972447
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggtttt 438  Q
    |||| |||||||||||||||||  ||||| |||||| ||||| ||||||||||    
T  1972395 tttttggctaaaatatgtttttggtccctgcaaataaagcgaatttgggtttt 1972447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 446
Target Start/End: Original strand, 26419532 - 26419568
Alignment:
Q  410 tccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| | ||||||||||||||||||||    
T  26419532 tccctacaaatataacaagtttgggttttggtccctg 26419568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 25977864 - 25977925
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||||||||    
T  25977864 attttaggctaaaatatgtttttggtccctgcaaatatagtgagtttgggttttggtccctg 25977925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 2412489 - 2412432
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||| |||||||    
T  2412489 taggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctg 2412432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 1777468 - 1777524
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| ||||||||||||||||| |||||||||||||    
T  1777468 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctg 1777524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 11087049 - 11087101
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    |||||||||||| ||||||||||| |||||||||||||||||| |||||||||    
T  11087049 ggctaaaatatgattttaatccctgcaaatatagcgagtttggcttttggtcc 11087101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 25979311 - 25979255
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||    
T  25979311 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctg 25979255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 30843643 - 30843699
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||    
T  30843643 aggctaaaatatgcttttaatcactgcaaatataacgagtttgggttttggtccctg 30843699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 23861750 - 23861807
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||||  ||||| ||||||| | |||||||| ||||||||||||    
T  23861750 taggctaaaatatgtttttggtccctgcaaatatggagagtttggattttggtccctg 23861807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 36837839 - 36837782
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||| |||||||| |||||  || || |||||||||||||||||||||||||||||||    
T  36837839 taggttaaaatatatttttggtctctgcaaatatagcgagtttgggttttggtccctg 36837782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 445
Target Start/End: Original strand, 12067000 - 12067051
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||||  |||||||||||||| ||| |||| ||||||||||||    
T  12067000 taaaatatgtttttggtccctacaaatataacgaatttgagttttggtccct 12067051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 20245367 - 20245309
Alignment:
Q  389 taggctaaaatatg-tttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||| || ||| |||||||||||| |||||||||| |||||||    
T  20245367 taggctaaaatatggtttttgattcctgcaaatatagcgaatttgggttttagtccctg 20245309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 450
Target Start/End: Complemental strand, 29794378 - 29794317
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    |||||||||||||||||||   ||||| |||||||||||| |||| |||||||| ||||||||    
T  29794378 ttaggctaaaatatgttttgg-tccctgcaaatatagcgaatttgagttttggttcctgataa 29794317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 8809595 - 8809652
Alignment:
Q  390 aggctaaaatatgtttttaatcccta-caaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  |||||  |||||||| ||| ||||||||||||||||||    
T  8809595 aggctaaaatatgtttttggtcccttgcaaatataacgaatttgggttttggtccctg 8809652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 1778849 - 1778797
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    |||||||||||| ||||  | ||| |||||||||||| |||||||||||||||    
T  1778849 ggctaaaatatgcttttggttcctgcaaatatagcgactttgggttttggtcc 1778797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 23863107 - 23863055
Alignment:
Q  393 ctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    |||||||||||||||  || || ||||||| |||||||||||||||| |||||    
T  23863107 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttgatccct 23863055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 9917 - 9977
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||    
T  9917 ttttaggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctg 9977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 3879081 - 3879141
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||    
T  3879081 ttttaggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctg 3879141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 33137288 - 33137232
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||    
T  33137288 aggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttagtccctg 33137232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 441
Target Start/End: Original strand, 38166493 - 38166545
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggt 441  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  38166493 taggctaaaatatgtttttaatccctgcaaatatagcgagtttggattttggt 38166545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 45619795 - 45619735
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||||    
T  45619795 ttttaggctaaaatatgtttttagtccctgcaaatatagcgagtttaggttttgttccctg 45619735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 29060942 - 29060889
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||||||||    
T  29060942 aggctaaaatatgtttttaatccctgcaaatatagcgagtttgaattttggtcc 29060889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 42359410 - 42359350
Alignment:
Q  386 ttttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||| |||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||    
T  42359410 tttttggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctg 42359350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 3880556 - 3880501
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||    
T  3880556 aggctaaaatatgtttttggttcctgcaaatatagcgagtttgggttttggtccct 3880501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 22204055 - 22204110
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||||| |||||||    
T  22204055 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctg 22204110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 32699373 - 32699314
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    |||||||||||||||||  |||||  ||||||||||||||||||||||||||||| ||||    
T  32699373 ggctaaaatatgtttttggtccctgtaaatatagcgagtttgggttttggtccctcataa 32699314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 45618283 - 45618340
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||| ||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  45618283 taggctaatatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctg 45618340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 19674410 - 19674469
Alignment:
Q  387 tttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||||| ||||  ||| | ||||||||||||||||| |||||||||||||    
T  19674410 tttaggctaaaatatgcttttggtccttgcaaatatagcgagtttgagttttggtccctg 19674469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 19675679 - 19675620
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    |||||||||||| ||||  ||||| |||||||| ||||||||| ||||||||||||||||    
T  19675679 ggctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtccctgataa 19675620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 40198576 - 40198629
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||| ||||   |||| |||||||||||||||||||||||||||||||    
T  40198576 aggctaaaatatgctttt---ccctgcaaatatagcgagtttgggttttggtccctg 40198629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 41933816 - 41933870
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    |||||||||||||| ||||  || || ||||||||||||||||||||||||||||    
T  41933816 taggctaaaatatgattttggtctctgcaaatatagcgagtttgggttttggtcc 41933870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 35054660 - 35054713
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtc 442  Q
    |||| ||||||||| ||||| ||||| |||||||||||| ||||||||||||||    
T  35054660 taggttaaaatatgattttagtccctgcaaatatagcgaatttgggttttggtc 35054713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 54121761 - 54121704
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||  ||||| ||||||  |||||||||||||||||||||||    
T  54121761 taggctaaaatatgattttgctccctgcaaatacggcgagtttgggttttggtccctg 54121704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 17281570 - 17281626
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||| || ||||| ||||| |||||||||||| ||||| ||||||||||||    
T  17281570 aggctaaaatgtgcttttagtccctgcaaatatagcgaatttggattttggtccctg 17281626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 17370072 - 17370128
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||| || ||||| ||||| |||||||||||| ||||| ||||||||||||    
T  17370072 aggctaaaatgtgcttttagtccctgcaaatatagcgaatttggattttggtccctg 17370128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 17371901 - 17371849
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||| |||| |||||| |||||||| ||| ||||||||||||||||||    
T  17371901 taaaatatgcttttgatccctgcaaatataacgaatttgggttttggtccctg 17371849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 33134889 - 33134945
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||||||||| |||||| |||||||  ||||||||| | |||||||||    
T  33134889 taggctaaaatatgtttttgatccctgcaaatatgacgagtttggatattggtccct 33134945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 34659705 - 34659765
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||||| ||||  ||||| ||||||| |||||||  ||||||||||||||||||    
T  34659705 aggctaaaatatgcttttggtccctgcaaatatggcgagttaaggttttggtccctgataa 34659765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 41935126 - 41935078
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtc 442  Q
    ||||||||||||||  ||||| |||||||| ||||||||||||||||||    
T  41935126 taaaatatgtttttggtccctgcaaatataacgagtttgggttttggtc 41935078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 55542639 - 55542583
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||| ||||||| |||||| ||||||||||  ||||||| |||||||||||    
T  55542639 aggctaaaatctgtttttgatccctgcaaatatagcatgtttgggatttggtccctg 55542583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 445
Target Start/End: Complemental strand, 16574424 - 16574373
Alignment:
Q  394 taaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||||| ||||| |||||||||||| |||  ||||||||||||    
T  16574424 taaaatatgtttttagtccctgcaaatatagcgaatttaagttttggtccct 16574373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 445
Target Start/End: Original strand, 29415545 - 29415600
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    |||||||||||| |||||||| || ||||||||  |||||||| ||||||||||||    
T  29415545 aggctaaaatatatttttaattccaacaaatatgacgagtttgagttttggtccct 29415600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 450
Target Start/End: Original strand, 32697999 - 32698058
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    |||||||||||| |||| |||||| |||||||||||| ||| |||||| || ||||||||    
T  32697999 ggctaaaatatgattttgatccctgcaaatatagcgaatttaggttttagttcctgataa 32698058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 16573377 - 16573429
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtc 442  Q
    ||||||||||||| ||||  || |||||||||| |||| ||||||||||||||    
T  16573377 aggctaaaatatgcttttggtctctacaaatatggcgaatttgggttttggtc 16573429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 42358031 - 42358087
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| |||||||||  |||||| |||||| ||||||    
T  42358031 aggctaaaatatgtttttggtccctgcaaatataggaagtttgagttttgatccctg 42358087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 374335 - 374389
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||||||||||||    
T  374335 ggctaaaatatgattttgatccctgcaaatatagcgagtttgggttttggtccct 374389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 345959 - 345902
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccct 445  Q
    ||||||||||||||||||||  ||||| |||||||||||| |||||||||||||||||    
T  345959 ttaggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccct 345902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 376434 - 376381
Alignment:
Q  385 attttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggtttt 438  Q
    |||||||||||||||||| ||||  ||||| |||||||||||||||||||||||    
T  376434 attttaggctaaaatatgcttttggtccctgcaaatatagcgagtttgggtttt 376381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 344934 - 344992
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||| ||||||| ||||  ||||| ||||||| |||||||||||||||||||||||    
T  344934 ttaggctcaaatatgattttggtccctgcaaatatggcgagtttgggttttggtccctg 344992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 30968 - 30911
Alignment:
Q  389 taggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||||| ||||  ||||| ||||||||| |||||||||||||||||||||    
T  30968 taggctaaaatatggttttggtccctgcaaatatagtgagtttgggttttggtccctg 30911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 29726 - 29784
Alignment:
Q  388 ttaggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||| ||||  ||||| |||||| | ||||||||| ||||||||||||    
T  29726 ttaggctaaaatatgcttttggtccctgcaaataaaacgagtttggattttggtccctg 29784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 11582 - 11526
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    ||||||||||||||||||  ||||| |||||||||||  ||||||||||||||||||    
T  11582 aggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctg 11526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 10315 - 10367
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtcc 443  Q
    |||||||||||| ||||  ||||| |||||||||||| |||| ||||||||||    
T  10315 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtcc 10367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 490 - 435
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| ||||  ||||| ||||||||| |||||||||||||||||||||    
T  490 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctg 435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 121044 - 120989
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| ||||  ||||| |||||||| ||||||||||||||||||||||    
T  121044 ggctaaaatatgcttttggtccctgcaaatataacgagtttgggttttggtccctg 120989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 119593 - 119648
Alignment:
Q  391 ggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctg 446  Q
    |||||||||||| ||||  ||||| |||||||||||| |||| |||||||||||||    
T  119593 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccctg 119648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 42813 - 42755
Alignment:
Q  392 gctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccctgataa 450  Q
    ||||||||||| ||||  ||| | ||||||| ||||||||| |||||||||||||||||    
T  42813 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtccctgataa 42755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 202578 - 202632
Alignment:
Q  390 aggctaaaatatgtttttaatccctacaaatatagcgagtttgggttttggtccc 444  Q
    ||||||||||||| ||||  ||||| |||||||| ||||||||| ||||||||||    
T  202578 aggctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtccc 202632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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