View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644_high_5 (Length: 526)
Name: NF4644_high_5
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 5 - 508
Target Start/End: Original strand, 23152529 - 23153031
Alignment:
| Q |
5 |
ggtagattatacttcaaaatattgaaagataacaaggtaaaggcaggatcctgacctgagcaatcttacaaacaatgacatgcccatcttctccccattc |
104 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23152529 |
ggtaaattctacttcaaaatattgaaagataacaaggtaaaggcaggatcctgacctgagcaatcttacaaacaatgacatgcccatcttctccccattc |
23152628 |
T |
|
| Q |
105 |
tttggtattttgaaccaaaagcataaatgaaactatggtcactagtacaattttgtaacaatccatagtactttactctattagtgcacaaacgtgtgga |
204 |
Q |
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| T |
23152629 |
tttggtattttgaaccaaaagcataaatgaaactatggtcactagtacaattttgtaacaatccatagtactttactctattagtgcacaaacgtgtgga |
23152728 |
T |
|
| Q |
205 |
taatatttttgtaatttaagtcaacaagttgttgtcgatagtgtgataaattgctacccgatccataaacgtggcagatattttatgcactcggggtatt |
304 |
Q |
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|||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| | | | ||||||| |
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| T |
23152729 |
taatatttttgtgatt-aagtcaacaagttgttgtcaatagtgtgataaattgctacccgttccataaaagtggcagatattttattctcgcagggtatt |
23152827 |
T |
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| Q |
305 |
atcttctctaccaaaaaccaataatttaattgatgatgatgaactcataatgtgaaatgacaatgacatgtgaattggttaatttactcatttaagtaca |
404 |
Q |
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| T |
23152828 |
atcttctctaccaaaaaccaataatttaattgatgatgatgaactcataatgtgaaatgacaatgacatgtgaattggttaatttaatcatttaagtaca |
23152927 |
T |
|
| Q |
405 |
tgattatattagtttgatatataattaattagtattgtttgtgaaaatcaaatttttcttcttatgtgttggaaatcataagtggcatctcagaaagatg |
504 |
Q |
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| T |
23152928 |
tgattatattagtttgatatataattaattggtattgtttgtgaaaatcaaatttttcttcttatgtgttggaaatcataagtggcatctcagaaagatg |
23153027 |
T |
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| Q |
505 |
ggat |
508 |
Q |
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|||| |
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| T |
23153028 |
ggat |
23153031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 23136062 - 23136183
Alignment:
| Q |
58 |
acctgagcaatcttacaaacaatgacatgcccatcttctccccattctttggtattttgaaccaaaagcataaatgaaactatggtcactagtacaattt |
157 |
Q |
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|||||||||||||||||||||||| |||| ||||| |||||||| ||| |||||||| | |||||| | ||||||||||||| || ||| ||||| |
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| T |
23136062 |
acctgagcaatcttacaaacaatggcatgtccatcatctccccacccttgtgtattttggatcaaaagaaggaatgaaactatggctacaagtgcaattc |
23136161 |
T |
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| Q |
158 |
tgtaacaatccatagtacttta |
179 |
Q |
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| T |
23136162 |
tataacaacccattgcacttta |
23136183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 23292681 - 23292597
Alignment:
| Q |
58 |
acctgagcaatcttacaaacaatgacatgcccatcttctccccattctttggtattttgaaccaaaagcataaatgaaactatgg |
142 |
Q |
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||||||||||||||||||||| ||| ||| || || ||||||||| ||| || ||| ||| ||||||||| || |||||||||| |
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| T |
23292681 |
acctgagcaatcttacaaacagtgaaatgtccttcctctccccatccttgtgtgtttggaagcaaaagcatgaaagaaactatgg |
23292597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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