View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4644_low_1 (Length: 927)
Name: NF4644_low_1
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 326 - 759
Target Start/End: Complemental strand, 41705399 - 41704969
Alignment:
| Q |
326 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagtgtgttagaggt |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41705399 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagtgtgttagaggt |
41705300 |
T |
|
| Q |
426 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaacag--tatttgnnnnnn |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41705299 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggtatttgtttttt |
41705200 |
T |
|
| Q |
524 |
nngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgatgtgagtgagagaatgagagtgttttgttt |
623 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
41705199 |
t-gtgttggaacttgaatacagagag--gagaagagtttttgaatttgtagatggagtggtgtgtgatgatatgagtgaga--atgagagtgttttgttt |
41705105 |
T |
|
| Q |
624 |
gttgtttataaaggggaaaaagaagagtgaggcacaggttttgaagtttccagctggtgaatttgtaaccttgtgggcgcatcctcacacgtgtacacaa |
723 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705104 |
gttgtttataaaggggaaaaagaagagtgaggcacaggttttgaagtttccagctggtgaatttgtaaccttgtgggcgcatcctcacacgtgtacacaa |
41705005 |
T |
|
| Q |
724 |
tatccatacaaaattcagttggaaaatgcaatgcag |
759 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705004 |
tatccatacaaaattcagttggaaaatgcaatgcag |
41704969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 41705724 - 41705459
Alignment:
| Q |
1 |
ctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatgggagttgcatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705724 |
ctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatgggagttgcatga |
41705625 |
T |
|
| Q |
101 |
aatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705624 |
aatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaac |
41705525 |
T |
|
| Q |
201 |
caaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaag |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705524 |
caaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaag |
41705459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 797 - 850
Target Start/End: Complemental strand, 41704937 - 41704885
Alignment:
| Q |
797 |
aataccataagtttagattaaaagattgcataaataatttgtttgagatttttg |
850 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||| || ||||| |
|
|
| T |
41704937 |
aataccataagtttagattaaaagattacataaa-aatttgtttgggacttttg |
41704885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 881 - 910
Target Start/End: Complemental strand, 41704840 - 41704811
Alignment:
| Q |
881 |
tttgacctaatcaatatgtatgtctcaact |
910 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41704840 |
tttgacctaatcaatatgtatgtctcaact |
41704811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
164 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
244 |
Q |
| |
|
||||||||| ||||| | ||| |||| || ||||||||||||||||| || ||||||||||||||||| |||||| |||| |
|
|
| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University