View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4644_low_11 (Length: 407)

Name: NF4644_low_11
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4644_low_11
NF4644_low_11
[»] chr2 (17 HSPs)
chr2 (75-222)||(4755230-4755378)
chr2 (282-391)||(4755438-4755547)
chr2 (122-220)||(26312525-26312623)
chr2 (121-171)||(6710842-6710892)
chr2 (121-216)||(3668896-3668992)
chr2 (121-215)||(11922003-11922097)
chr2 (121-157)||(16117882-16117918)
chr2 (320-372)||(41464728-41464780)
chr2 (320-371)||(9373477-9373528)
chr2 (133-180)||(9583236-9583283)
chr2 (1-31)||(4755191-4755221)
chr2 (133-171)||(8798680-8798718)
chr2 (129-171)||(30465365-30465407)
chr2 (74-160)||(31050029-31050118)
chr2 (122-160)||(36267097-36267135)
chr2 (121-171)||(37347807-37347857)
chr2 (102-155)||(7868231-7868286)
[»] chr1 (19 HSPs)
chr1 (148-215)||(42915913-42915981)
chr1 (140-214)||(37073724-37073799)
chr1 (122-181)||(11120645-11120704)
chr1 (121-171)||(38902067-38902117)
chr1 (128-181)||(43822869-43822922)
chr1 (128-180)||(13984132-13984184)
chr1 (121-171)||(32451729-32451779)
chr1 (133-217)||(51504515-51504600)
chr1 (128-180)||(14775143-14775195)
chr1 (128-215)||(42831704-42831792)
chr1 (136-215)||(47364381-47364461)
chr1 (128-171)||(32851737-32851780)
chr1 (148-218)||(46591591-46591661)
chr1 (323-368)||(6793611-6793656)
chr1 (138-171)||(24555820-24555853)
chr1 (128-180)||(38600939-38600992)
chr1 (128-180)||(27544466-27544518)
chr1 (128-172)||(43675172-43675216)
chr1 (141-220)||(47783644-47783723)
[»] chr5 (17 HSPs)
chr5 (136-215)||(35463212-35463293)
chr5 (128-220)||(25324216-25324307)
chr5 (128-216)||(11200452-11200541)
chr5 (323-371)||(1138300-1138348)
chr5 (122-178)||(12593222-12593278)
chr5 (128-181)||(18396496-18396549)
chr5 (110-160)||(22579788-22579840)
chr5 (128-215)||(26675457-26675544)
chr5 (128-215)||(26947065-26947152)
chr5 (138-180)||(8228861-8228903)
chr5 (138-180)||(8234245-8234287)
chr5 (323-368)||(22731344-22731389)
chr5 (319-372)||(35318596-35318649)
chr5 (128-160)||(2970351-2970383)
chr5 (136-215)||(15468108-15468187)
chr5 (323-371)||(15968328-15968376)
chr5 (323-371)||(27488364-27488412)
[»] chr7 (15 HSPs)
chr7 (131-180)||(36656589-36656638)
chr7 (126-215)||(38360760-38360848)
chr7 (123-180)||(4958336-4958393)
chr7 (128-215)||(31330453-31330541)
chr7 (136-180)||(43302104-43302148)
chr7 (131-181)||(30859665-30859715)
chr7 (128-215)||(44441650-44441738)
chr7 (137-180)||(36657875-36657918)
chr7 (134-176)||(41015401-41015443)
chr7 (138-214)||(31067778-31067855)
chr7 (320-369)||(40599936-40599985)
chr7 (121-180)||(5513816-5513876)
chr7 (133-215)||(29914384-29914468)
chr7 (131-222)||(38989804-38989896)
chr7 (136-180)||(47841407-47841451)
[»] chr8 (22 HSPs)
chr8 (128-179)||(31226447-31226498)
chr8 (128-217)||(13629014-13629104)
chr8 (128-217)||(13729426-13729516)
chr8 (128-171)||(1155114-1155157)
chr8 (121-215)||(4797203-4797298)
chr8 (121-172)||(18806539-18806590)
chr8 (128-213)||(23036855-23036941)
chr8 (140-180)||(2603062-2603102)
chr8 (133-181)||(28557340-28557388)
chr8 (128-176)||(37673734-37673782)
chr8 (319-371)||(43932132-43932184)
chr8 (121-172)||(13079885-13079936)
chr8 (140-214)||(28540731-28540806)
chr8 (128-171)||(31128534-31128577)
chr8 (129-171)||(6519022-6519064)
chr8 (319-372)||(9550191-9550244)
chr8 (323-372)||(38298583-38298632)
chr8 (112-157)||(5535753-5535800)
chr8 (133-220)||(9604484-9604572)
chr8 (121-157)||(23982366-23982402)
chr8 (320-376)||(24599683-24599739)
chr8 (140-215)||(35973375-35973451)
[»] chr4 (20 HSPs)
chr4 (121-180)||(10180584-10180643)
chr4 (319-369)||(29686485-29686535)
chr4 (134-180)||(35308968-35309014)
chr4 (128-180)||(23359196-23359248)
chr4 (319-371)||(24100772-24100824)
chr4 (319-371)||(24100887-24100939)
chr4 (140-180)||(42426880-42426920)
chr4 (122-220)||(2396352-2396451)
chr4 (320-371)||(22210803-22210854)
chr4 (121-160)||(45833962-45834001)
chr4 (170-219)||(2574068-2574118)
chr4 (133-214)||(35034274-35034356)
chr4 (121-171)||(35144491-35144541)
chr4 (149-214)||(40446392-40446460)
chr4 (319-372)||(27587328-27587381)
chr4 (134-171)||(52199906-52199943)
chr4 (140-180)||(822369-822409)
chr4 (319-371)||(36196448-36196500)
chr4 (128-172)||(41115949-41115993)
chr4 (319-371)||(52136782-52136834)
[»] chr6 (7 HSPs)
chr6 (121-214)||(3543259-3543353)
chr6 (110-180)||(3435995-3436067)
chr6 (121-220)||(7693893-7693993)
chr6 (121-216)||(31743385-31743481)
chr6 (133-172)||(32658408-32658447)
chr6 (334-376)||(33128853-33128895)
chr6 (319-372)||(359627-359680)
[»] chr3 (18 HSPs)
chr3 (121-214)||(28197497-28197591)
chr3 (135-208)||(36277745-36277819)
chr3 (121-220)||(36619213-36619312)
chr3 (121-168)||(55222597-55222644)
chr3 (318-372)||(13356816-13356870)
chr3 (121-171)||(46006049-46006099)
chr3 (121-181)||(40242155-40242215)
chr3 (133-180)||(29950768-29950815)
chr3 (133-180)||(29999922-29999969)
chr3 (122-160)||(13755124-13755162)
chr3 (122-160)||(13768525-13768563)
chr3 (319-369)||(44118268-44118318)
chr3 (320-369)||(25313626-25313675)
chr3 (333-370)||(27108555-27108592)
chr3 (121-177)||(35539687-35539743)
chr3 (136-180)||(36902309-36902353)
chr3 (319-371)||(46220379-46220431)
chr3 (323-371)||(49885396-49885444)
[»] scaffold0036 (1 HSPs)
scaffold0036 (121-215)||(63609-63704)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 4755230 - 4755378
Alignment:
Q  75 ttagagaatttataatgggaaaattcattttgagcacttaaatgaatcacgtttacatatcactcatttataattttttaatagtattatctaataaata 174  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  4755230 ttagagaatttataatggaaaaattcattttgagcacttaaatgaatcacgtctacatatcactcatttataattttttaatattattatctaataaata 4755329  T
Q  175 ctcaa-ttttccaactcaacacctcacacaaatttcttaaatagaactc 222  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4755330 ctcaatttttccaactcaacacctcacacaaatttcttaaatagaactc 4755378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 282 - 391
Target Start/End: Original strand, 4755438 - 4755547
Alignment:
Q  282 gtaagacccgcaagtacagtaaatattttcttcagctcttattataagaaacaattaattttttaaattcaataaataattaatgtatctcattaacggt 381  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||    
T  4755438 gtaagacccgcaagtacagtaaatattttcttcggcccttattataagaaacaattaattttttagattcattaaataattaatgtatctcgttaacagt 4755537  T
Q  382 ggttgctaat 391  Q
    ||| ||||||    
T  4755538 ggtagctaat 4755547  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 26312623 - 26312525
Alignment:
Q  122 cacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaatt-ttccaactcaacacctcacacaaatttcttaaatagaac 220  Q
    ||||| |||| |||||||||||||||||||||||||||| || |||||||  ||||||||  |||||||| | | ||||||||||||| |||||||||||    
T  26312623 cacgtgtacacatcactcatttataattttttaatagtagtacctaataagcactcaattcctccaactc-agatctcacacaaatttattaaatagaac 26312525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 6710842 - 6710892
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataa 171  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  6710842 tcacgtgtacagatcactcatttataattttttaatagtagtatctaataa 6710892  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 3668992 - 3668896
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaata 216  Q
    |||||| || |||| ||| ||||||||||||||||||||| ||  |||||| ||||||||   |||||||||| |  ||||||||||||||||||||    
T  3668992 tcacgtgtatatattactaatttataattttttaatagtagtaattaataagtactcaatccgtccaactcaatatatcacacaaatttcttaaata 3668896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 11922097 - 11922003
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaatt-ttccaactcaacacctcacacaaatttcttaaat 215  Q
    |||||| |||| || ||||||||||||||||||||||||| || |||| ||  ||||||||  |||||| ||| | ||||||||||||||||||||    
T  11922097 tcacgtgtacacattactcatttataattttttaatagtagtacctaaaaagcactcaattcctccaacccaa-atctcacacaaatttcttaaat 11922003  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 16117882 - 16117918
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaata 157  Q
    |||||| ||||||||||||||||||||||||||||||    
T  16117882 tcacgtgtacatatcactcatttataattttttaata 16117918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 41464728 - 41464780
Alignment:
Q  320 ttattataagaaacaattaattttttaaattcaataaataattaatgtatctc 372  Q
    ||||||||| |||||||| ||||||||| |||| | |||||||||||||||||    
T  41464728 ttattataaaaaacaattgattttttaagttcattgaataattaatgtatctc 41464780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 9373528 - 9373477
Alignment:
Q  320 ttattataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    |||||||||||||||||| | |||||||||||| | ||||||||| ||||||    
T  9373528 ttattataagaaacaattgactttttaaattcattgaataattaacgtatct 9373477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 9583283 - 9583236
Alignment:
Q  133 atcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||||| ||||||||||||||||||||| ||||||||||  |||||||    
T  9583283 atcacttatttataattttttaatagtagtatctaataagcactcaat 9583236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 4755191 - 4755221
Alignment:
Q  1 atgcaacattttatcatatgaaaaatgaaag 31  Q
    |||||||||||||||||||||||||||||||    
T  4755191 atgcaacattttatcatatgaaaaatgaaag 4755221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 8798680 - 8798718
Alignment:
Q  133 atcactcatttataattttttaatagtattatctaataa 171  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  8798680 atcactcatttataattttttaataataatatctaataa 8798718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 30465407 - 30465365
Alignment:
Q  129 acatatcactcatttataattttttaatagtattatctaataa 171  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||    
T  30465407 acatataacttatttataattttttaatagtagtatctaataa 30465365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 31050029 - 31050118
Alignment:
Q  74 cttagagaatttataatgggaaaattcatttt-gagcacttaaatgaatc--acgtttacatatcactcatttataattttttaatagta 160  Q
    ||||||| |||||||||||  ||| ||||||| ||| |||||||||| ||  || | |||| |||||| |||||||||||||||||||||    
T  31050029 cttagagcatttataatggagaaactcatttttgagtacttaaatgagtctcacatgtacacatcacttatttataattttttaatagta 31050118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 36267135 - 36267097
Alignment:
Q  122 cacgtttacatatcactcatttataattttttaatagta 160  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  36267135 cacgtgtacacatcactcatttataattttttaatagta 36267097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 37347807 - 37347857
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataa 171  Q
    |||||| |||| |||| | ||||||||||||||||||||| ||||||||||    
T  37347807 tcacgtgtacacatcatttatttataattttttaatagtaatatctaataa 37347857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 7868231 - 7868286
Alignment:
Q  102 ttttgagcacttaaatgaat--cacgtttacatatcactcatttataattttttaa 155  Q
    |||| |||||||||||||||  ||| | |||| |||||||||||||||||||||||    
T  7868231 tttttagcacttaaatgaatttcacatgtacagatcactcatttataattttttaa 7868286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 42915913 - 42915981
Alignment:
Q  148 ttttttaatagtattatctaataaatactcaattt-tccaactcaacacctcacacaaatttcttaaat 215  Q
    ||||||||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||||||||||    
T  42915913 ttttttaatagtaatatctaataaacactcaattcctccaactcaacacatcacacaaatttcttaaat 42915981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 37073799 - 37073724
Alignment:
Q  140 atttataattttttaatagtattatctaataaatactcaattt-tccaactcaacacctcacacaaatttcttaaa 214  Q
    |||||||||||||||||| || ||||||||||| ||||||||| | |||| ||||||||||||||||| |||||||    
T  37073799 atttataattttttaatactagtatctaataaacactcaatttctgcaacccaacacctcacacaaatatcttaaa 37073724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 11120704 - 11120645
Alignment:
Q  122 cacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaatt 181  Q
    ||||| |||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  11120704 cacgtatacacatcactcatttataattctttaatagtagtatctaataaacactcaatt 11120645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 38902117 - 38902067
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataa 171  Q
    |||||| ||||||||||||||||||||||||||||||||| || |||||||    
T  38902117 tcacgtgtacatatcactcatttataattttttaatagtagtacctaataa 38902067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 43822922 - 43822869
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaatt 181  Q
    |||| |||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  43822922 tacacatcactcatttataattttttaatagtagtatctaataagcactcaatt 43822869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 13984184 - 13984132
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||| ||||| |||||||||||||||||||||| |||||||||| ||||||||    
T  13984184 tacacatcacacatttataattttttaatagtagtatctaataagtactcaat 13984132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 32451729 - 32451779
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataa 171  Q
    ||||||||||| |||||| ||||||||||||||||||||| || |||||||    
T  32451729 tcacgtttacacatcactaatttataattttttaatagtaatacctaataa 32451779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 51504515 - 51504600
Alignment:
Q  133 atcactcatttataattttttaatagtattatctaataaatactcaatt-ttccaactcaacacctcacacaaatttcttaaatag 217  Q
    |||||||||||||||||||||||||||| ||  || ||| |||||||||  |||||| || || | ||||||| ||||||||||||    
T  51504515 atcactcatttataattttttaatagtagtacgtattaagtactcaattcctccaacccatcatcccacacaagtttcttaaatag 51504600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 14775143 - 14775195
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    ||||||| ||| |||||||||||| |||||||| || ||||||||||||||||    
T  14775143 tacatataacttatttataattttctaatagtagtaactaataaatactcaat 14775195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 42831792 - 42831704
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaatt-ttccaactcaacacctcacacaaatttcttaaat 215  Q
    ||||||| ||||||||||||||||||||||||| || |||||||  ||| ||||  ||||||  | || |||||| |||||||||||||    
T  42831792 tacatattactcatttataattttttaatagtagtacctaataagaactaaattcctccaacctagcatctcacaaaaatttcttaaat 42831704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 47364461 - 47364381
Alignment:
Q  136 actcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaat 215  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| |||   | ||||| | || ||||||||||||||||||||    
T  47364461 actcatttataatttttaaatagtagtatataataaatacttaatcacttcaactgagcatctcacacaaatttcttaaat 47364381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 32851737 - 32851780
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataa 171  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||    
T  32851737 tacacatcactcatttacaattttttaatagtagtatctaataa 32851780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 46591661 - 46591591
Alignment:
Q  148 ttttttaatagtattatctaataaatactcaattttccaactcaacacctcacacaaatttcttaaataga 218  Q
    |||||||||| || ||||||||||||| | ||||||||||| ||  | |||||||| ||||||||| ||||    
T  46591661 ttttttaataataatatctaataaatatttaattttccaacgcagtatctcacacatatttcttaagtaga 46591591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 6793611 - 6793656
Alignment:
Q  323 ttataagaaacaattaattttttaaattcaataaataattaatgta 368  Q
    |||||||||| | ||||||||||||||||| | |||||||||||||    
T  6793611 ttataagaaaaagttaattttttaaattcattgaataattaatgta 6793656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 24555820 - 24555853
Alignment:
Q  138 tcatttataattttttaatagtattatctaataa 171  Q
    ||||||||||||||||||||||| ||||||||||    
T  24555820 tcatttataattttttaatagtagtatctaataa 24555853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 38600939 - 38600992
Alignment:
Q  128 tacatatcactcatttataat-tttttaatagtattatctaataaatactcaat 180  Q
    |||| |||||||||||||||  |||||||||||| |||||||||| ||||||||    
T  38600939 tacacatcactcatttataaaatttttaatagtaatatctaataagtactcaat 38600992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 27544518 - 27544466
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||| ||||||||||||||||||||||||| ||  |||||||||  |||||||    
T  27544518 tacacatcactcatttataattttttaataatagcatctaataagcactcaat 27544466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 43675172 - 43675216
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaa 172  Q
    |||| |||||||||||||||||||||||| ||| ||| |||||||    
T  43675172 tacacatcactcatttataattttttaattgtagtatttaataaa 43675216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 47783644 - 47783723
Alignment:
Q  141 tttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaatagaac 220  Q
    ||||||||||||||||| || ||| ||||||| |||||||   |||||||||| | |||||||||| ||||||||| ||||    
T  47783644 tttataattttttaataatagtatttaataaacactcaatcactccaactcaa-atctcacacaaagttcttaaatggaac 47783723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 35463212 - 35463293
Alignment:
Q  136 actcatttataattttttaatagtattatctaataaatactcaat--tttccaactcaacacctcacacaaatttcttaaat 215  Q
    |||| |||||||||||||||||||| || ||||||| ||||||||  |||| ||| ||||| ||||||||||||||||||||    
T  35463212 actcgtttataattttttaatagtagtacctaataagtactcaatcctttcaaacccaacatctcacacaaatttcttaaat 35463293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 25324307 - 25324216
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaattt-tccaactcaacacctcacacaaatttcttaaatagaac 220  Q
    |||| |||| ||||||||||||||||||||||| ||||||||| | ||||||||| |||||| ||| || |  |||||||||||||||| ||||    
T  25324307 tacaaatcattcatttataattttttaatagtaatatctaatatacactcaatttctccaacccaaaactt--cacaaatttcttaaatggaac 25324216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 11200541 - 11200452
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaattt-tccaactcaacacctcacacaaatttcttaaata 216  Q
    |||| ||||||||||||||||||||||||| || || ||||||| || | ||||| |||||| || ||  ||||||||||||||||||||    
T  11200541 tacacatcactcatttataattttttaataataatacctaataagtattaaatttctccaacccagcatttcacacaaatttcttaaata 11200452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 1138348 - 1138300
Alignment:
Q  323 ttataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    |||||||||| |||| |||||||||||||| ||||||||||||||||||    
T  1138348 ttataagaaaaaattgattttttaaattcattaaataattaatgtatct 1138300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 12593278 - 12593222
Alignment:
Q  122 cacgtttacatatcactcatttataattttttaatagtattatctaataaatactca 178  Q
    ||||| |||| ||||||||||||||| |||||||||||| |||||||||| ||||||    
T  12593278 cacgtgtacacatcactcatttataactttttaatagtagtatctaataagtactca 12593222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 18396496 - 18396549
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaatt 181  Q
    |||| ||| ||||||||||||||||||||| || || |||||||||||||||||    
T  18396496 tacacatccctcatttataattttttaataatagtacctaataaatactcaatt 18396549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 22579840 - 22579788
Alignment:
Q  110 acttaaatgaatc--acgtttacatatcactcatttataattttttaatagta 160  Q
    |||||||||||||  ||||  ||||||||||||||||||||||||||||||||    
T  22579840 acttaaatgaatctcacgtacacatatcactcatttataattttttaatagta 22579788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 26675457 - 26675544
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaat 215  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||  ||| |||  ||||||||| | | |||||| |||||||||||||    
T  26675457 tacacatcactcatttataattttttaatagtagtatcttataagcacttaatccttccaactc-agatctcacataaatttcttaaat 26675544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 26947065 - 26947152
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaat 215  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||  ||| |||  ||||||||| | | |||||| |||||||||||||    
T  26947065 tacacatcactcatttataattttttaatagtagtatcttataagcacttaatccttccaactc-agatctcacataaatttcttaaat 26947152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 8228903 - 8228861
Alignment:
Q  138 tcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||||||||||||||||| | || |||||||||||||||||||    
T  8228903 tcatttataattttttaacaatagtatctaataaatactcaat 8228861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 8234287 - 8234245
Alignment:
Q  138 tcatttataattttttaatagtattatctaataaatactcaat 180  Q
    ||||||||||||||||||||||| |||||||||| | ||||||    
T  8234287 tcatttataattttttaatagtaatatctaataagttctcaat 8234245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 22731389 - 22731344
Alignment:
Q  323 ttataagaaacaattaattttttaaattcaataaataattaatgta 368  Q
    |||||||||| | ||||||||||| ||||| |||||||||||||||    
T  22731389 ttataagaaaaagttaattttttagattcattaaataattaatgta 22731344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 35318649 - 35318596
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtatctc 372  Q
    ||||||| ||||||||||| ||||||||| || | | |||||||||||||||||    
T  35318649 cttattacaagaaacaattgattttttaagtttattgaataattaatgtatctc 35318596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 2970351 - 2970383
Alignment:
Q  128 tacatatcactcatttataattttttaatagta 160  Q
    |||| ||||||||||||||||||||||||||||    
T  2970351 tacacatcactcatttataattttttaatagta 2970383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 15468108 - 15468187
Alignment:
Q  136 actcatttataattttttaatagtattatctaataaatact-caattttccaactcaacacctcacacaaatttcttaaat 215  Q
    ||||||| ||||||||| || |||| |||||||||| |||| |  ||||||||| || || ||||||||||||||||||||    
T  15468108 actcattgataattttt-aacagtaatatctaataagtacttcgtttttccaacgcagcatctcacacaaatttcttaaat 15468187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 15968328 - 15968376
Alignment:
Q  323 ttataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    |||||||||| | ||||||||||| ||||| | ||||||||||||||||    
T  15968328 ttataagaaaaagttaattttttagattcattcaataattaatgtatct 15968376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 27488364 - 27488412
Alignment:
Q  323 ttataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    |||||||||| ||||||||||||| ||||| | ||||||| ||||||||    
T  27488364 ttataagaaaaaattaattttttagattcattcaataattgatgtatct 27488412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 36656589 - 36656638
Alignment:
Q  131 atatcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  36656589 atatcactcatttataattttttaatagtggtatctaataaatactcaat 36656638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 38360760 - 38360848
Alignment:
Q  126 tttacatatcactcatttataattttttaatagtattatctaataaatactcaattttccaactcaacacctcacacaaatttcttaaat 215  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||  |||||| | |||||  ||||| ||||||||||||| ||||||    
T  38360760 tttacatatcactgattcataattttttaatagtagtatctaataagcactcaa-tctccaatccaacatctcacacaaattttttaaat 38360848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 4958393 - 4958336
Alignment:
Q  123 acgtttacatatcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||| |||| |||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  4958393 acgtgtacacatcattcatttataattttttaatagtagtatctaataaacactcaat 4958336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 31330541 - 31330453
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaat 215  Q
    |||| |||||||||||||||||||||||| ||| || |||||||  |||||||   |||||| |||||  |||||||||||||||||||    
T  31330541 tacacatcactcatttataattttttaatggtagtacctaataagcactcaatccctccaacccaacatttcacacaaatttcttaaat 31330453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 43302104 - 43302148
Alignment:
Q  136 actcatttataattttttaatagtattatctaataaatactcaat 180  Q
    ||||||||||||||||||||||||| || ||||||||||||||||    
T  43302104 actcatttataattttttaatagtagtacctaataaatactcaat 43302148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 30859715 - 30859665
Alignment:
Q  131 atatcactcatttataattttttaatagtattatctaataaatactcaatt 181  Q
    |||||||||||||||||||||||||||||| || | ||||| |||||||||    
T  30859715 atatcactcatttataattttttaatagtagtacccaataagtactcaatt 30859665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 44441738 - 44441650
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaat 215  Q
    |||| |||||||||||||||||||||||  ||| || |||||||  ||||||| | |||||| || || |||||| |||||||||||||    
T  44441738 tacacatcactcatttataattttttaacggtagtacctaataagaactcaatatctccaacccagcatctcacaaaaatttcttaaat 44441650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 36657875 - 36657918
Alignment:
Q  137 ctcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||||||||||||||||||||||| ||||||||||  |||||||    
T  36657875 ctcatttataattttttaatagtactatctaataagcactcaat 36657918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 41015443 - 41015401
Alignment:
Q  134 tcactcatttataattttttaatagtattatctaataaatact 176  Q
    |||||||||||||||||||||||| || |||||||||| ||||    
T  41015443 tcactcatttataattttttaataataatatctaataagtact 41015401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 31067778 - 31067855
Alignment:
Q  138 tcatttataattttttaatagtattatctaataaatactcaattt-tccaactcaacacctcacacaaatttcttaaa 214  Q
    |||||||||||||| ||| |||  ||||||||||||||||| ||| | ||| ||||||| | ||||||||||| ||||    
T  31067778 tcatttataattttctaacagttgtatctaataaatactcattttcttcaattcaacactttacacaaatttcgtaaa 31067855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 40599936 - 40599985
Alignment:
Q  320 ttattataagaaacaattaattttttaaattcaataaataattaatgtat 369  Q
    |||||||||  ||||||| | |||||| ||||||||||||||||||||||    
T  40599936 ttattataaacaacaattgactttttagattcaataaataattaatgtat 40599985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 5513816 - 5513876
Alignment:
Q  121 tcacgtttacatatcactcatttataa-ttttttaatagtattatctaataaatactcaat 180  Q
    |||||| |||| |||||| |||||||| ||||||||||||| |||||||||| | ||||||    
T  5513816 tcacgtgtacacatcacttatttataatttttttaatagtaatatctaataagttctcaat 5513876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 29914384 - 29914468
Alignment:
Q  133 atcactcatttataattttt-taatagtattatctaataaatactcaattt-tccaactcaacacctcacacaaatttcttaaat 215  Q
    |||||| ||||||||||||| |||||||| || |||||||| ||| |||   ||||||| |||| |||||||||||||| |||||    
T  29914384 atcacttatttataatttttataatagtaatacctaataaacacttaatccctccaacttaacatctcacacaaatttcataaat 29914468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 38989896 - 38989804
Alignment:
Q  131 atatcactcatttataattttttaatagtattatctaataaatactcaattttccaa-ctcaacacctcacacaaatttcttaaatagaactc 222  Q
    |||||| | ||||||| |||||||||| || | ||||||||  | |||||||| ||| ||||| | |||||||| ||||||||||| ||||||    
T  38989896 atatcatttatttatatttttttaataataatgtctaataagcattcaatttttcaaactcaatatctcacacatatttcttaaatggaactc 38989804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 47841407 - 47841451
Alignment:
Q  136 actcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||||||||||||||| |||||||| ||| |||||| ||||||||    
T  47841407 actcatttataattttgtaatagtagtatttaataagtactcaat 47841451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 31226447 - 31226498
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaa 179  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||||    
T  31226447 tacacatcactcatttataattttttaatagtagtacctaataaatactcaa 31226498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 13629014 - 13629104
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaatag 217  Q
    |||| |||| ||||||||||||||||||||||| |||||||||| || |||||   |||||| ||||| |||| ||||| |||||||||||    
T  13629014 tacacatcattcatttataattttttaatagtagtatctaataagtagtcaatccctccaacccaacatctcatacaaaattcttaaatag 13629104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 13729426 - 13729516
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaatag 217  Q
    |||| |||| ||||||||||||||||||||||| |||||||||| || |||||   |||||| ||||| |||| ||||| |||||||||||    
T  13729426 tacacatcattcatttataattttttaatagtagtatctaataagtagtcaatccctccaacccaacatctcatacaaaattcttaaatag 13729516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 1155114 - 1155157
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataa 171  Q
    |||| |||||||||||||||||||||||||||| ||||||||||    
T  1155114 tacacatcactcatttataattttttaatagtagtatctaataa 1155157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 4797203 - 4797298
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaata-ctcaattttccaactcaacacctcacacaaatttcttaaat 215  Q
    |||||| ||| ||||||| |||||||||||||||||||||  || ||||||||| || |    ||||||||| || ||||||||||||||||||||    
T  4797203 tcacgtgtacgtatcactaatttataattttttaatagtagcatttaataaatatctaatccctccaactcagcatctcacacaaatttcttaaat 4797298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 18806539 - 18806590
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaa 172  Q
    |||||| |||| |||||| ||||||||||||||||||||| |||||||||||    
T  18806539 tcacgtgtacacatcacttatttataattttttaatagtagtatctaataaa 18806590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 23036941 - 23036855
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaa 213  Q
    |||| |||||||| ||||||||||| ||||||| ||||||||||  ||||||| | | |||| || || ||||||||||||||||||    
T  23036941 tacacatcactcaattataatttttcaatagtagtatctaataagaactcaatctcttcaacccagcatctcacacaaatttcttaa 23036855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 2603062 - 2603102
Alignment:
Q  140 atttataattttttaatagtattatctaataaatactcaat 180  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  2603062 atttataattttttaatagtagtatctaataagtactcaat 2603102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 28557388 - 28557340
Alignment:
Q  133 atcactcatttataattttttaatagtattatctaataaatactcaatt 181  Q
    |||||| ||||||||||||||||||||| || ||||||| |||||||||    
T  28557388 atcactaatttataattttttaatagtagtacctaataactactcaatt 28557340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 37673734 - 37673782
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatact 176  Q
    |||| |||||||||||||||||||||||||||| || ||||||| ||||    
T  37673734 tacacatcactcatttataattttttaatagtagtacctaataagtact 37673782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 43932184 - 43932132
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    ||||||||||||||||||| | |||||| ||||| | ||||||||||||||||    
T  43932184 cttattataagaaacaattgactttttagattcattgaataattaatgtatct 43932132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 13079936 - 13079885
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaa 172  Q
    |||||| ||||| ||||||||||||||||||| ||||||| || ||||||||    
T  13079936 tcacgtgtacatttcactcatttataatttttgaatagtagtacctaataaa 13079885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 28540806 - 28540731
Alignment:
Q  140 atttataattttttaatagtattatctaataaatactcaatt-ttccaactcaacacctcacacaaatttcttaaa 214  Q
    ||||||||||||||||||||| ||  |||||| || ||||||  |||||| || || |||||||||||||||||||    
T  28540806 atttataattttttaatagtagtacttaataagtattcaattactccaacccagcatctcacacaaatttcttaaa 28540731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 31128534 - 31128577
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataa 171  Q
    |||| |||||||||||||||||||||||||||| || |||||||    
T  31128534 tacacatcactcatttataattttttaatagtagtacctaataa 31128577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 6519022 - 6519064
Alignment:
Q  129 acatatcactcatttataattttttaatagtattatctaataa 171  Q
    |||||||||| ||||||||||||||||||||| || |||||||    
T  6519022 acatatcacttatttataattttttaatagtagtacctaataa 6519064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 9550244 - 9550191
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtatctc 372  Q
    ||||||||||||||||||| | |||||||||| | | ||||| |||||||||||    
T  9550244 cttattataagaaacaattgactttttaaatttattgaataactaatgtatctc 9550191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 38298632 - 38298583
Alignment:
Q  323 ttataagaaacaattaattttttaaattcaataaataattaatgtatctc 372  Q
    ||||||||||||||| ||||||||  |||| | |||||||||||||||||    
T  38298632 ttataagaaacaattgattttttaggttcattgaataattaatgtatctc 38298583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 5535753 - 5535800
Alignment:
Q  112 ttaaatgaat--cacgtttacatatcactcatttataattttttaata 157  Q
    ||||||||||  ||||| |||| |||||||||||||||||||||||||    
T  5535753 ttaaatgaattccacgtgtacacatcactcatttataattttttaata 5535800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 9604484 - 9604572
Alignment:
Q  133 atcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaatagaac 220  Q
    |||||| |||||||||||||||||| || ||||||||||  |||||||   |||||| || || |||| | ||||||||||||| ||||    
T  9604484 atcactaatttataattttttaataatagtatctaataagaactcaatccatccaacccagcatctcataaaaatttcttaaatggaac 9604572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 23982402 - 23982366
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaata 157  Q
    |||||| |||| |||||||||||||||||||||||||    
T  23982402 tcacgtgtacacatcactcatttataattttttaata 23982366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 24599683 - 24599739
Alignment:
Q  320 ttattataagaaacaattaattttttaaattcaataaataattaatgtatctcatta 376  Q
    ||||||||||||| |||| | |||||||||||| | ||||| |||||||| ||||||    
T  24599683 ttattataagaaataattgactttttaaattcattgaataaataatgtatttcatta 24599739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 35973375 - 35973451
Alignment:
Q  140 atttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaat 215  Q
    ||||||||||||||||||||  || |||||||| ||| |||   |||||||||| | |||||||| |||||||||||    
T  35973375 atttataattttttaatagttgtacctaataaacacttaatccatccaactcaatatctcacacacatttcttaaat 35973451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 10180584 - 10180643
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||||| ||||||||||||||||||||||||||||||||| || |||||||  |||||||    
T  10180584 tcacgtgtacatatcactcatttataattttttaatagtagtacctaataagaactcaat 10180643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 29686535 - 29686485
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtat 369  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||||||    
T  29686535 cttattataagaaacaattaattttttaaattcattgtataattaatgtat 29686485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 35308968 - 35309014
Alignment:
Q  134 tcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  35308968 tcacttatttataattttttaatagtaatatctaataagtactcaat 35309014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 23359248 - 23359196
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||| |||| ||||||||||||||||||||||| ||||||||||  |||||||    
T  23359248 tacacatcattcatttataattttttaatagtagtatctaataagcactcaat 23359196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 24100772 - 24100824
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    |||||||||||||| |||||| |||||| ||||| | ||||||||||||||||    
T  24100772 cttattataagaaataattaactttttagattcattgaataattaatgtatct 24100824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 24100939 - 24100887
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    |||||||||||||| |||||| |||||| ||||| | ||||||||||||||||    
T  24100939 cttattataagaaataattaactttttagattcattgaataattaatgtatct 24100887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 42426880 - 42426920
Alignment:
Q  140 atttataattttttaatagtattatctaataaatactcaat 180  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  42426880 atttataattttttaatagtagtatctaataaaaactcaat 42426920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 2396451 - 2396352
Alignment:
Q  122 cacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaatagaac 220  Q
    ||||| |||| |||||| ||||||||||| ||||||||| || |||||||  |||||||   || |||||| || |||||| ||||||||||||| ||||    
T  2396451 cacgtgtacacatcacttatttataatttgttaatagtagtacctaataagaactcaatcgctcaaactcagcatctcacaaaaatttcttaaatggaac 2396352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 22210803 - 22210854
Alignment:
Q  320 ttattataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    |||||||||||||||||| | |||||||||||| | |||||||||| |||||    
T  22210803 ttattataagaaacaattgactttttaaattcattgaataattaatatatct 22210854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 45834001 - 45833962
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagta 160  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  45834001 tcacgtgtacacatcactcatttataattttttaatagta 45833962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 2574068 - 2574118
Alignment:
Q  170 aaatactcaattt-tccaactcaacacctcacacaaatttcttaaatagaa 219  Q
    ||||||||||||| |||||||||| | |||| |||||||||||||||||||    
T  2574068 aaatactcaatttctccaactcaatatctcatacaaatttcttaaatagaa 2574118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 35034274 - 35034356
Alignment:
Q  133 atcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaa 214  Q
    |||| |||||||||| |||||| ||||| ||||||||||| | |||||  || ||||||||||| ||||||||| || |||||    
T  35034274 atcaatcatttataactttttattagtaatatctaataaacattcaatcctttcaactcaacacttcacacaaagtttttaaa 35034356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 35144541 - 35144491
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataa 171  Q
    |||||| ||||||||| | ||||||||||||||| ||||| ||||||||||    
T  35144541 tcacgtgtacatatcaattatttataattttttagtagtagtatctaataa 35144491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 40446392 - 40446460
Alignment:
Q  149 tttttaatagtattatctaataaatactcaattt---tccaactcaacacctcacacaaatttcttaaa 214  Q
    |||||||||||| ||||||||||| |||| ||||   | ||||||||||| |||||| |||||||||||    
T  40446392 tttttaatagtagtatctaataaacactcgatttttatgcaactcaacacttcacacgaatttcttaaa 40446460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 27587381 - 27587328
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtatctc 372  Q
    |||||||||||||| |||| ||||||||  |||| | |||||||||||||||||    
T  27587381 cttattataagaaataatttattttttaggttcattgaataattaatgtatctc 27587328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 52199943 - 52199906
Alignment:
Q  134 tcactcatttataattttttaatagtattatctaataa 171  Q
    ||||||||||||||||||||||||||| || |||||||    
T  52199943 tcactcatttataattttttaatagtagtacctaataa 52199906  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 822369 - 822409
Alignment:
Q  140 atttataattttttaatagtattatctaataaatactcaat 180  Q
    ||||||| ||||||||||||| |||||||||| ||||||||    
T  822369 atttatagttttttaatagtagtatctaataagtactcaat 822409  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 36196500 - 36196448
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    |||||||||||||| |||| |||||||| |||||   ||||||||||||||||    
T  36196500 cttattataagaaaaaattgattttttagattcatagaataattaatgtatct 36196448  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 41115993 - 41115949
Alignment:
Q  128 tacatatcactcatttataattttttaatagtattatctaataaa 172  Q
    ||||||||||| ||||||| ||||| ||||||| |||||||||||    
T  41115993 tacatatcacttatttatagtttttaaatagtagtatctaataaa 41115949  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 52136834 - 52136782
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    ||||||||||||||||||| ||||||| | ||||   ||||||||||||||||    
T  52136834 cttattataagaaacaattgatttttttagttcatagaataattaatgtatct 52136782  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 3543353 - 3543259
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaa 214  Q
    |||||| |||| || |||||||||||| |||||||||||||||||||| || |||| |||   ||||| ||| || |||||||||||||||||||    
T  3543353 tcacgtgtacacattactcatttataaatttttaatagtattatctaacaagtacttaatccctccaattcagcatctcacacaaatttcttaaa 3543259  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 3435995 - 3436067
Alignment:
Q  110 acttaaatgaatcac--gtttacatatcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||||||||||||||  || |||| |||| |||||| |||||||||||||||| |||||||||| || |||||    
T  3435995 acttaaatgaatcacatgtatacacatcattcatttgtaattttttaatagtaatatctaataagtattcaat 3436067  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 7693893 - 7693993
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaatagaa 219  Q
    |||||| |||| |||||||||||||||||||||| || || || ||||||| ||||||||   |||||| ||  | ||||||||||||| |||||| |||    
T  7693893 tcacgtatacacatcactcatttataattttttagtaatagtacctaataagtactcaatccctccaacccataatctcacacaaattttttaaatggaa 7693992  T
Q  220 c 220  Q
    |    
T  7693993 c 7693993  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 31743481 - 31743385
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaatt-ttccaactcaacacctcacacaaatttcttaaata 216  Q
    ||||||||| | |||||| |||||||||| |||||| | | ||| ||||||| |||||| | || ||||||| ||  ||||||||||||||||||||    
T  31743481 tcacgtttatacatcacttatttataattatttaatggcagtatataataaacactcaactctttcaactcagcatttcacacaaatttcttaaata 31743385  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 32658408 - 32658447
Alignment:
Q  133 atcactcatttataattttttaatagtattatctaataaa 172  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  32658408 atcactcatttataattttttaatagtagtacctaataaa 32658447  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 33128853 - 33128895
Alignment:
Q  334 aattaattttttaaattcaataaataattaatgtatctcatta 376  Q
    ||||||||||||| ||||| | |||||||||||||||||||||    
T  33128853 aattaattttttagattcatttaataattaatgtatctcatta 33128895  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 359680 - 359627
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtatctc 372  Q
    ||||||||||||||||||| | ||||||  |||||| ||||| |||||||||||    
T  359680 cttattataagaaacaattgactttttaggttcaatgaataactaatgtatctc 359627  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 28197591 - 28197497
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaattt-tccaactcaacacctcacacaaatttcttaaa 214  Q
    |||||| |||| |||||||||| |||||||||||||||||  |||||||||| | | | ||| |||||| || || |||||||||||||||||||    
T  28197591 tcacgtgtacacatcactcattcataattttttaatagtaacatctaataaacaataagtttctccaacccagcatctcacacaaatttcttaaa 28197497  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 36277745 - 36277819
Alignment:
Q  135 cactcatttataattttttaatagtattatctaataaatactcaatt-ttccaactcaacacctcacacaaattt 208  Q
    |||| ||||||||||||||||||||| |||||||||| || ||||||  ||||||||| || |||||||||||||    
T  36277745 cactaatttataattttttaatagtaatatctaataagtattcaattcctccaactcagcatctcacacaaattt 36277819  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 36619312 - 36619213
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaatagaa 219  Q
    |||||| |||| |||||| ||||||||||||||||||||| |||||||||| || |||||    ||||| ||||| ||||  ||||||||||||||||||    
T  36619312 tcacgtgtacacatcactgatttataattttttaatagta-tatctaataagtattcaatccccccaacccaacatctcatgcaaatttcttaaatagaa 36619214  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 55222644 - 55222597
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaa 168  Q
    |||||| ||||||||| ||||||||||||||||||||||| |||||||    
T  55222644 tcacgtgtacatatcagtcatttataattttttaatagtagtatctaa 55222597  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 13356870 - 13356816
Alignment:
Q  318 tcttattataagaaacaattaattttttaaattcaataaataattaatgtatctc 372  Q
    |||||||||||||||| ||| | |||||||||||| ||||||| |||||||||||    
T  13356870 tcttattataagaaactattgactttttaaattcattaaataagtaatgtatctc 13356816  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 46006049 - 46006099
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataa 171  Q
    |||||| |||| |||||||||||||||||||||||||||| || |||||||    
T  46006049 tcacgtgtacacatcactcatttataattttttaatagtagtacctaataa 46006099  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 40242155 - 40242215
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaatt 181  Q
    |||||| || |||||||| ||||||||||||||||||||| || |||||||  ||||||||    
T  40242155 tcacgtgtatatatcacttatttataattttttaatagtaatacctaataagcactcaatt 40242215  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 29950768 - 29950815
Alignment:
Q  133 atcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||||||||||||| ||||||||||||| ||||||||||  |||||||    
T  29950768 atcactcatttatatttttttaatagtagtatctaataagcactcaat 29950815  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 29999922 - 29999969
Alignment:
Q  133 atcactcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||||||||||||| ||||||||||||| ||||||||||  |||||||    
T  29999922 atcactcatttatatttttttaatagtagtatctaataagcactcaat 29999969  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 13755124 - 13755162
Alignment:
Q  122 cacgtttacatatcactcatttataattttttaatagta 160  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  13755124 cacgtgtacacatcactcatttataattttttaatagta 13755162  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 13768525 - 13768563
Alignment:
Q  122 cacgtttacatatcactcatttataattttttaatagta 160  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  13768525 cacgtgtacacatcactcatttataattttttaatagta 13768563  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 44118318 - 44118268
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtat 369  Q
    ||||||||||||||||||| | |||||| ||||| || |||||||||||||    
T  44118318 cttattataagaaacaattgactttttagattcattatataattaatgtat 44118268  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 25313675 - 25313626
Alignment:
Q  320 ttattataagaaacaattaattttttaaattcaataaataattaatgtat 369  Q
    |||||||||||||||||| | ||||||| |||| |||| |||||||||||    
T  25313675 ttattataagaaacaattgactttttaagttcattaaacaattaatgtat 25313626  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 27108592 - 27108555
Alignment:
Q  333 caattaattttttaaattcaataaataattaatgtatc 370  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  27108592 caattaattttttaaattcattaaataatttatgtatc 27108555  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 35539743 - 35539687
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactc 177  Q
    |||||| |||| |||| | ||||||||||||||||||||| || |||||||| ||||    
T  35539743 tcacgtgtacacatcatttatttataattttttaatagtagtacctaataaacactc 35539687  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 36902309 - 36902353
Alignment:
Q  136 actcatttataattttttaatagtattatctaataaatactcaat 180  Q
    |||| ||| ||||||||||| |||| |||||||||||||||||||    
T  36902309 actcttttttaattttttaacagtaatatctaataaatactcaat 36902353  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 46220379 - 46220431
Alignment:
Q  319 cttattataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    |||||||||||||| |||| |||||||| |||||   ||||||||||||||||    
T  46220379 cttattataagaaaaaattgattttttatattcatagaataattaatgtatct 46220431  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 49885396 - 49885444
Alignment:
Q  323 ttataagaaacaattaattttttaaattcaataaataattaatgtatct 371  Q
    |||||||||| ||||||||||||| ||||| | ||||||| ||||||||    
T  49885396 ttataagaaaaaattaattttttagattcattcaataattgatgtatct 49885444  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 63704 - 63609
Alignment:
Q  121 tcacgtttacatatcactcatttataattttttaatagtattatctaataaatactcaat-tttccaactcaacacctcacacaaatttcttaaat 215  Q
    |||||| ||||| ||||| ||||||||||||||||||||| || |||||||  ||||||| | || ||| || || |||||||| |||||||||||    
T  63704 tcacgtgtacatgtcactaatttataattttttaatagtagtacctaataaggactcaatctctctaacccatcatctcacacatatttcttaaat 63609  T

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