View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644_low_19 (Length: 256)
Name: NF4644_low_19
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 2680733 - 2680958
Alignment:
| Q |
20 |
aatggtgatgttacatctaaatgatataggagtcagtttcttccacaagctattgccacaatcattctgacagtattgagtcttgccacaagtacttaaa |
119 |
Q |
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| T |
2680733 |
aatggtgatgttacatctaaatgatataggagtcagtttcttccacaagctattgccacaatcattctgacagtattgagtcttgccacaagtacttaaa |
2680832 |
T |
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| Q |
120 |
cttctgagtaatcaaacccatgctttttataaaacctctagcaactaatcttgtttgatgcttagatatctatccatttggtttcaatttcaatttgaaa |
219 |
Q |
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| T |
2680833 |
cttctgagtaatcaaacccatgctttttataaaacctctagcaactaatcttgtttgaagcttagatatctctccatttggtttcaatttcaacttgaaa |
2680932 |
T |
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| Q |
220 |
gtccattttacatctatagctttctt |
245 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2680933 |
gtccattttacatctatagctttctt |
2680958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 9816508 - 9816411
Alignment:
| Q |
148 |
ataaaacctctagcaactaatcttgtttgatgcttagatatctatccatttggtttcaatttcaatttgaaagtccattttacatctatagctttctt |
245 |
Q |
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| T |
9816508 |
ataaaacctctcgcaactatccttgctttatgcttagatatgtcaccatttggttttaatttcagcttgaaaatccatttcacatctatagctttctt |
9816411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 11753912 - 11754009
Alignment:
| Q |
148 |
ataaaacctctagcaactaatcttgtttgatgcttagatatctatccatttggtttcaatttcaatttgaaagtccattttacatctatagctttctt |
245 |
Q |
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| T |
11753912 |
ataaaacctctagcaactaacctttctttatgcttagatatttctccatttggtttcaacttcaatttgaaaacaaattttacatctataactttctt |
11754009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 31357773 - 31357721
Alignment:
| Q |
193 |
ccatttggtttcaatttcaatttgaaagtccattttacatctatagctttctt |
245 |
Q |
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|||||||| |||||||||||||||||| |||| || |||||||| | |||||| |
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| T |
31357773 |
ccatttggcttcaatttcaatttgaaaatccacttcacatctattggtttctt |
31357721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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