View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644_low_2 (Length: 621)
Name: NF4644_low_2
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Complemental strand, 41392343 - 41391802
Alignment:
| Q |
18 |
ctaatcagaagacttttgtctgtttgttttgtgaagtggtctccttctaagggcaataccaaagaaccattaatgtagatgacaatttctttgggaaact |
117 |
Q |
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| T |
41392343 |
ctaatcagaagacttttgtctgtttgttttgtgaagtggtctccttctaagggcaataccaaataaccattaatgtagatgacaatttctttgggaaact |
41392244 |
T |
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| Q |
118 |
tgataaggctgactttgaaagattaataagaaattagtttgaagagtgggtaggcttctcaagctcttgcgagattgtttctaatatgtaggcataactt |
217 |
Q |
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| T |
41392243 |
tgataaggctgactttgaaagtttaataagaaattagtttgaagagtgggtaggcttctcaagctcttgcgagattgtttctaatatgtaggcataactt |
41392144 |
T |
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| Q |
218 |
gctattctttataatatcactttggtttggaaaagaaaagggtacaagaaagttataattgaattagactctccaatgtctataaatttatttatttata |
317 |
Q |
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| T |
41392143 |
gctattctttataatatcactttggtttggaaaagaaaagggtacaagaaagttataattgaattagactcttcaatgtctataaatttatttatttata |
41392044 |
T |
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| Q |
318 |
ttgcaacaagtactcaaacttatcacagtgttgaacaaaaaatctaatatacagaaatatgttgctgagactgagagattaagaattctaatttggtcca |
417 |
Q |
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| T |
41392043 |
ttgcaacaagtcctcaaacttatcacagtgttgaacaaaaaatctaatatacagaaatatgttgctgagactgagagattaagaattctaatttggtcca |
41391944 |
T |
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| Q |
418 |
tgctccccgagaagggaaccattgtgtgaattacttaacaaagatgggta-ctagaagtcattttttctgattgttggtgttgttggattctcctactgt |
516 |
Q |
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| T |
41391943 |
tgctccccgagaagggaaccattgtgtgaattacttaacaaagatgggtacctagaagtcattttttctgattgttggtgttgttggattctcctactgt |
41391844 |
T |
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| Q |
517 |
agggatggatagggcatggtgtttctgaggcaatacatattt |
558 |
Q |
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| T |
41391843 |
agggatggatagggcatggtgtttctgaggcaatacatattt |
41391802 |
T |
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