View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644_low_20 (Length: 251)
Name: NF4644_low_20
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 744831 - 745071
Alignment:
| Q |
11 |
cagagatgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagctgcgcccgg |
110 |
Q |
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| T |
744831 |
cagagatgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagccgcgcccgg |
744930 |
T |
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| Q |
111 |
tccaaaattcatgtactcaccataatacaaagtgtttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccatataggac |
210 |
Q |
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| T |
744931 |
tccaaaattcatgtactcaccataatacaaagtttttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccatataggac |
745030 |
T |
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| Q |
211 |
aacatatatacagtcctagaatacattttccatggacgacc |
251 |
Q |
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| T |
745031 |
aacatatatacagtcctagaatacattttccatggacgacc |
745071 |
T |
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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 41574059 - 41573827
Alignment:
| Q |
16 |
atgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagctgcgcccggtccaa |
115 |
Q |
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| T |
41574059 |
atgaattgggccaccgtgaatctatttgcttccacggtggatgtaataacccgatacccaggccactttacacgttgcccaatagctccaccaggtccat |
41573960 |
T |
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| Q |
116 |
aattcatgtactcaccataatacaaagtgtttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccatataggacaacat |
215 |
Q |
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| T |
41573959 |
aattcatgtattcaccataatacaaagtgtctaaagcaaatgttgtattccactctaaccatccacgtggatgtacatgatctcccatgtaagataacat |
41573860 |
T |
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| Q |
216 |
atatacagtcctagaatacattttccatggacg |
248 |
Q |
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| T |
41573859 |
gtacactgttctagagtatagtttccatggacg |
41573827 |
T |
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