View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4644_low_22 (Length: 244)
Name: NF4644_low_22
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 726252 - 726494
Alignment:
| Q |
1 |
tgcaaattctaactccttctgtgtagctaaaacttctgctatctctgaatctagtaat-aaaaaacgtgacaacaactagcactaacgacaagaccttca |
99 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
726252 |
tgcaaattctaactctttctgtgtagctaaaacttctgctatctctgaatctagtaatgaaaaaacgtgacaacaactagcactaacgacaagaccttca |
726351 |
T |
|
| Q |
100 |
taatctctcacaacaacacaatatcccatttacccctttctattgaacttgttgcatcaatatttaacttataacaaccattctagggggtgtccagtga |
199 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
726352 |
taatctctcacaacaacacaatatctcatttacccatttctattgaacctgttacatcaatatttaacttataacaaccattctagggggtgtccagtga |
726451 |
T |
|
| Q |
200 |
acatcatatacaggtaagtttagacattcacctaacatctctg |
242 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||| |||||| |
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|
| T |
726452 |
acatcatatacaagtaagtttagacatccaccgaacgtctctg |
726494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 43542285 - 43542193
Alignment:
| Q |
24 |
tagctaaaacttctgctatctctgaatctagtaataaaaa-acgtgacaacaactagcactaacgacaagaccttcataatctctcacaacaa |
115 |
Q |
| |
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|||||||| ||||||| | |||||||||| ||||| |||| | || ||| ||||||||| |||||||| |||||||| |||||||||||||| |
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| T |
43542285 |
tagctaaagcttctgcaacctctgaatctggtaatgaaaagatttgccaaaaactagcaccaacgacaacaccttcattatctctcacaacaa |
43542193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 31438639 - 31438482
Alignment:
| Q |
24 |
tagctaaaacttctgctatctctgaatctagtaataaaaa-acgtgacaacaactagcactaacgacaagaccttcataatctctcacaacaacac-aat |
121 |
Q |
| |
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| T |
31438639 |
tagctaaagcttttggtacctatgaatttagtaatgaaaatacttgtcagcaactagcagcaacgacaacaccttcgttatctctcactgcaacaccaat |
31438540 |
T |
|
| Q |
122 |
atcccatttacccctttctattgaacttgttgcatcaatatttaacttataacaacca |
179 |
Q |
| |
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| | |||||||||| ||| | | || || |||||||| |||||||||||| |||||| |
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|
| T |
31438539 |
acctcatttacccccctctgtcggacatgctgcatcaacatttaacttatagcaacca |
31438482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 2059194 - 2058984
Alignment:
| Q |
2 |
gcaaattctaactccttctgtgtagctaaaacttctgctatctctgaatctagtaataaaaa-acgtgacaacaactagcactaacgacaagaccttcat |
100 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||| |||| ||| |||||||||||| |||| || | ||||||||||||| |||||| | |||||||| |
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|
| T |
2059194 |
gcaaattacaaccccttctgcatagctaaaactttagctacctccgaatctagtaatgaaaagactttccaacaactagcaccaacgaccacaccttcat |
2059095 |
T |
|
| Q |
101 |
aatctctcacaacaaca-caatatcccatttacccctttctattgaacttgttgcatcaatatttaacttataacaacca-ttctagggggtgtccagtg |
198 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||| ||||| | || |||||| || | ||||| |||||| |||||| | || |||| |||||||| |
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|
| T |
2059094 |
tatctctcacaacaacaccaatacctcatttacccccctctatcggacctgttgcgtccacatttagcttatatcaaccactaataaggggcgtccagtg |
2058995 |
T |
|
| Q |
199 |
aacatcatata |
209 |
Q |
| |
|
||||||||||| |
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|
| T |
2058994 |
aacatcatata |
2058984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 3363054 - 3363275
Alignment:
| Q |
1 |
tgcaaattctaactccttctgtgtagctaaaacttctgctatctctgaatctagtaataaaaa-acgtgacaacaactagcactaacgacaagaccttca |
99 |
Q |
| |
|
||||||||| ||| ||||| | |||||||| ||| | ||| |||||||||| ||||| |||| || ||||| || |||||| |||| |||| ||||||| |
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|
| T |
3363054 |
tgcaaattccaaccccttccgcatagctaaagctttttctacctctgaatctggtaatgaaaagacttgacagcatctagcagtaaccacaataccttca |
3363153 |
T |
|
| Q |
100 |
taatctctcacaacaaca-caatatcccatttacccctttctattgaacttgttgcatcaatatttaacttataacaaccattctagggg-gtgtccagt |
197 |
Q |
| |
|
|| | ||||||||||||| ||||| |||| ||||||| | |||||| || | |||||||| ||||| |||||| |||||||| | |||| ||||||||| |
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|
| T |
3363154 |
tagtatctcacaacaacatcaataccccacttaccccct-ctattggacatactgcatcaacatttagcttatagcaaccattatcggggggtgtccagt |
3363252 |
T |
|
| Q |
198 |
gaacatcatatacaggtaagttt |
220 |
Q |
| |
|
|||||||| ||| ||||||||| |
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| T |
3363253 |
gaacatcagatatgggtaagttt |
3363275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 8085893 - 8085732
Alignment:
| Q |
24 |
tagctaaaacttctgctatctctgaatctagtaataaaaa-acgtgacaacaactagcactaacgacaagaccttcata----atctctcacaacaaca- |
117 |
Q |
| |
|
|||||||||||| | || |||| ||||||||||| |||| || ||||| ||||||| | ||| |||| ||||||||| |||||||||||||||| |
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|
| T |
8085893 |
tagctaaaacttttcttacctctaaatctagtaatcaaaagacttgacatcaactaggagcaacaacaacaccttcatatataatctctcacaacaacat |
8085794 |
T |
|
| Q |
118 |
caatatcccatttacccctttctattgaacttgttgcatcaatatttaacttataacaacca |
179 |
Q |
| |
|
||| | |||||||||||| |||||| || || |||||||| ||||| |||||| |||||| |
|
|
| T |
8085793 |
caacaccccatttacccccctctattagacctgctgcatcaacatttagcttatagcaacca |
8085732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 9111984 - 9112156
Alignment:
| Q |
2 |
gcaaattctaactccttctgtgtagctaaaacttctgctatctctgaatctagtaataaaaa-acgtgacaacaactagcactaacgacaagaccttcat |
100 |
Q |
| |
|
|||||||| ||| ||||| | |||||||| ||||||||| || |||||||||||| ||| || || |||||||||||| |||||||| |||||||| |
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|
| T |
9111984 |
gcaaattccaaccccttccgcatagctaaagcttctgctacatccgaatctagtaatgaaaggacttgccaacaactagcagcaacgacaacaccttcat |
9112083 |
T |
|
| Q |
101 |
aatctctcacaacaaca-caatatcccatttacccctttctattgaacttgttgcatcaatatttaacttata |
172 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||| || || || | || |||||||| |||||||||||| |
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|
| T |
9112084 |
tatctctcacaacaacaccaataccccatttatccccctcgatcgagcctgctgcatcaacatttaacttata |
9112156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 38311984 - 38311870
Alignment:
| Q |
24 |
tagctaaaacttctgctatctctgaatctagtaataaaaa-acgtgacaacaactagcactaacgacaagaccttcataatctctcacaacaaca-caat |
121 |
Q |
| |
|
|||||||| ||||| ||| || ||||||| ||||| |||| || ||||||||||||||| ||| |||| ||||||||||||||| ||||||||| |||| |
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|
| T |
38311984 |
tagctaaagcttctcctacctttgaatctggtaatgaaaagacttgacaacaactagcagcaaccacaataccttcataatctcttacaacaacaccaat |
38311885 |
T |
|
| Q |
122 |
atcccatttacccct |
136 |
Q |
| |
|
| |||| |||||||| |
|
|
| T |
38311884 |
accccacttacccct |
38311870 |
T |
|
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