View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644_low_24 (Length: 240)
Name: NF4644_low_24
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 10101959 - 10102163
Alignment:
| Q |
19 |
agtgcatgtttaaattgacgatgaactaggcgagtgaaatcacggcgagccattgtgattttggcaaaagctacacttcgtagcatcaacaacatcacag |
118 |
Q |
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| T |
10101959 |
agtgcatgtttaaattgacgatgaactaggcgagtgaaatcacggcgagccattgtgattttggcaaaagctacacttcgtagcatcaacaacatcacag |
10102058 |
T |
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| Q |
119 |
ttccaccgttatttcgacaaattcaccgtgattcaagttatcgtatgaagtttttcattaaaagttacatgcttttaaaaatattatacttatcgcctta |
218 |
Q |
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| T |
10102059 |
ttccaccgttatttcgacaaattcaccgtgatttaagttatcgtatgaagtttttcattaaaagttacatgcttttaaaaatattatacttatcgcctta |
10102158 |
T |
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| Q |
219 |
gaata |
223 |
Q |
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||||| |
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| T |
10102159 |
gaata |
10102163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 10214138 - 10213964
Alignment:
| Q |
25 |
tgtttaaattgacgatgaactaggcgagtgaaatcacggcgagccattgtgattttggcaaaagctacacttcgtagcatcaacaacatcacagttccac |
124 |
Q |
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| T |
10214138 |
tgtttgaatcgacgatgaactaggc----aaaatcaccgcaagccattgtgattttggcaaaagctacactttgtagcatcaacaacatcacggtgccac |
10214043 |
T |
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| Q |
125 |
cgttatttcgacaaattcaccgtgattcaagttatcgtatgaagtttttcattaaaagttacatgcttttaaaaatatt |
203 |
Q |
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| T |
10214042 |
agttattttgtcgaattcactgtggttcaagttatcgtatgaaggttttcattaaaagttacatgcttttcaaaatatt |
10213964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 10101484 - 10101630
Alignment:
| Q |
55 |
aaatcacggcgagccattgtgattttggcaaaagctacacttcgtagcatcaacaacatcacagttccaccgttatttcgacaaattcaccgtgattcaa |
154 |
Q |
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| T |
10101484 |
aaatcacggcaagccattgtgatcttggcaaaagctacactttgtagcat-aacaacatcacggtgccatcgttatttcgtcaaattcactgt-attcat |
10101581 |
T |
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| Q |
155 |
gttatcgtatgaagtttttcattaaaagttacatgcttttaaaaatatt |
203 |
Q |
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| T |
10101582 |
gttattgtatgaaggttttcattaaaagttgcatgctttttaaagtatt |
10101630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 9661790 - 9661659
Alignment:
| Q |
73 |
gtgattttggcaaaagctacacttcgtagcatcaacaacatcacagttccaccgttatttcgacaaattcaccgtgattcaagttatcgtatgaagtttt |
172 |
Q |
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| T |
9661790 |
gtgattttggcaaaaaccacactttatagaatcaacaacatcacggtgccacctttgtttcgtcaaattcaccgtgattcaagttatcgtatgaaggttt |
9661691 |
T |
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| Q |
173 |
tcattaaaagttacatgcttttaaaaatatta |
204 |
Q |
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| T |
9661690 |
tcaataaaagttgcatgctttttaaaatatta |
9661659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 12110265 - 12110133
Alignment:
| Q |
73 |
gtgattttggcaaaagctacacttcgtagcatcaacaacatcacagttccaccgttatttcgacaaattcaccgtgattcaagttatcgtatgaagtttt |
172 |
Q |
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||||||||| ||||| || ||||| |||| ||||||||||||||||| ||||| || ||||| |||||||||||||||||||||| |||||||| ||| |
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| T |
12110265 |
gtgattttgacaaaaacttcactttgtagaatcaacaacatcacagtgccacctttgtttcgttaaattcaccgtgattcaagttactgtatgaaggttt |
12110166 |
T |
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| Q |
173 |
tcattaaaagttacatgcttttaaaaatattat |
205 |
Q |
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||| |||||||| ||||||||| |||||||||| |
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| T |
12110165 |
tcaataaaagttgcatgctttttaaaatattat |
12110133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 9659893 - 9659849
Alignment:
| Q |
150 |
ttcaagttatcgtatgaagtttttcattaaaagttacatgctttt |
194 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
9659893 |
ttcaagttatcgtatgaagattttcattaaaagttgcatgctttt |
9659849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 14816398 - 14816449
Alignment:
| Q |
83 |
caaaagctacacttcgtagcatcaacaacatcacagttccaccgttatttcg |
134 |
Q |
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| T |
14816398 |
caaaagctacacttcggagcttcaacaaaatcacggttccaccgtgatttcg |
14816449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 8472547 - 8472590
Alignment:
| Q |
76 |
attttggcaaaagctacacttcgtagcatcaacaacatcacagt |
119 |
Q |
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| T |
8472547 |
attttggcaaaagctacactttgtagcttcaacaaaatcacagt |
8472590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 6774769 - 6774724
Alignment:
| Q |
71 |
ttgtgattttggcaaaagctacacttcgtagcatcaacaacatcac |
116 |
Q |
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|||||||||| ||||||||||||||||| ||| ||||||| ||||| |
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| T |
6774769 |
ttgtgattttagcaaaagctacacttcggagcttcaacaaaatcac |
6774724 |
T |
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