View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4644_low_25 (Length: 239)
Name: NF4644_low_25
Description: NF4644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4644_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 9311452 - 9311244
Alignment:
| Q |
1 |
ttattccatcatgtgcattataatttttcaaacgtttgtagactannnnnnn-agtattttattgattgaaatcacgtgactttgaggacatcaaaagaa |
99 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9311452 |
ttattccatcacgtgcattataatttttcaaacgtttgtagactattttttatagtattttattgattgaaatcacgtgactttgaggacatcaaaagaa |
9311353 |
T |
|
| Q |
100 |
aactgcaaacacaagcttgatggtccaagtaggat-----aatgaatatacagcacataattgttaaaatcaaatagtttggattttcgtctctcttgtg |
194 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9311352 |
aactgcaaacacaagcttgatggtccaagtaggattaacaaatgaatatacagcacataattgttaaaatcaaatagtttggattttcgtctctcttgtg |
9311253 |
T |
|
| Q |
195 |
atggtccaa |
203 |
Q |
| |
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||||||||| |
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| T |
9311252 |
atggtccaa |
9311244 |
T |
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